RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 IFT172Q9UG01 1749 aa21.83■■□□□ 1.09
VIPAS39-210ENST00000557466 PPLO60437 1756 aa21.83■■□□□ 1.09
VIPAS39-210ENST00000557466 NPHP4O75161 1426 aaPredicted RBP21.82■■□□□ 1.08
VIPAS39-210ENST00000557466 SPATA31E1Q6ZUB1 1445 aa21.82■■□□□ 1.08
VIPAS39-210ENST00000557466 LTKP29376 864 aa21.82■■□□□ 1.08
VIPAS39-210ENST00000557466 TXNDC2Q86VQ3 553 aa21.81■■□□□ 1.08
VIPAS39-210ENST00000557466 EID1Q9Y6B2 187 aa21.79■■□□□ 1.08
VIPAS39-210ENST00000557466 DMRT2Q9Y5R5 561 aa21.78■■□□□ 1.08
VIPAS39-210ENST00000557466 ZNF326Q5BKZ1 582 aaKnown RBP21.77■■□□□ 1.08
VIPAS39-210ENST00000557466 NUTM2DQ5VT03 806 aaPredicted RBP21.75■■□□□ 1.07
VIPAS39-210ENST00000557466 NRXN3Q9Y4C0 1643 aa21.75■■□□□ 1.07
VIPAS39-210ENST00000557466 PLEKHG1Q9ULL1 1385 aa21.74■■□□□ 1.07
VIPAS39-210ENST00000557466 PPP1R15AO75807 674 aaPredicted RBP21.73■■□□□ 1.07
VIPAS39-210ENST00000557466 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.73■■□□□ 1.07
VIPAS39-210ENST00000557466 SETBP1Q9Y6X0 1596 aa21.71■■□□□ 1.07
VIPAS39-210ENST00000557466 HDGFP51858 240 aaKnown RBP21.71■■□□□ 1.07
VIPAS39-210ENST00000557466 RGL3Q3MIN7 710 aa21.7■■□□□ 1.06
VIPAS39-210ENST00000557466 RPGRIP1LQ68CZ1 1315 aa21.7■■□□□ 1.06
VIPAS39-210ENST00000557466 DIP2AQ14689 1571 aa21.7■■□□□ 1.06
VIPAS39-210ENST00000557466 SENP3Q9H4L4 574 aaPredicted RBP21.69■■□□□ 1.06
VIPAS39-210ENST00000557466 STRCP1A6NGW2 1772 aa21.69■■□□□ 1.06
VIPAS39-210ENST00000557466 ADAMTS13Q76LX8 1427 aa21.68■■□□□ 1.06
VIPAS39-210ENST00000557466 SETD1AO15047 1707 aaKnown RBP21.68■■□□□ 1.06
VIPAS39-210ENST00000557466 LTBP4Q8N2S1 1624 aa21.66■■□□□ 1.06
VIPAS39-210ENST00000557466 MYOM2P54296 1465 aa21.66■■□□□ 1.06
VIPAS39-210ENST00000557466 ZNF335Q9H4Z2 1342 aaPredicted RBP21.64■■□□□ 1.05
VIPAS39-210ENST00000557466 BCANQ96GW7 911 aa21.64■■□□□ 1.05
VIPAS39-210ENST00000557466 SLC26A8Q96RN1 970 aa21.64■■□□□ 1.05
VIPAS39-210ENST00000557466 NWD1Q149M9 1564 aa21.63■■□□□ 1.05
VIPAS39-210ENST00000557466 SIN3AQ96ST3 1273 aa21.63■■□□□ 1.05
VIPAS39-210ENST00000557466 CHD2O14647 1828 aaKnown RBP21.63■■□□□ 1.05
VIPAS39-210ENST00000557466 VGFO15240 615 aaPredicted RBP21.62■■□□□ 1.05
VIPAS39-210ENST00000557466 NRXN1Q9ULB1 1477 aa21.62■■□□□ 1.05
VIPAS39-210ENST00000557466 ADGRF5Q8IZF2 1346 aa21.61■■□□□ 1.05
VIPAS39-210ENST00000557466 ALKQ9UM73 1620 aa21.61■■□□□ 1.05
VIPAS39-210ENST00000557466 PIK3C2GO75747 1445 aa21.6■■□□□ 1.05
VIPAS39-210ENST00000557466 LAMC1P11047 1609 aa21.58■■□□□ 1.05
VIPAS39-210ENST00000557466 CPS1P31327 1500 aa21.58■■□□□ 1.04
VIPAS39-210ENST00000557466 NEUROD1Q13562 356 aa21.57■■□□□ 1.04
VIPAS39-210ENST00000557466 ILDR1Q86SU0 546 aaPredicted RBP21.57■■□□□ 1.04
VIPAS39-210ENST00000557466 TBX22Q9Y458 520 aa21.57■■□□□ 1.04
VIPAS39-210ENST00000557466 XRN1Q8IZH2 1706 aaKnown RBP21.57■■□□□ 1.04
VIPAS39-210ENST00000557466 ASXL1Q8IXJ9 1541 aa21.55■■□□□ 1.04
VIPAS39-210ENST00000557466 DCAF11Q8TEB1 546 aa21.55■■□□□ 1.04
VIPAS39-210ENST00000557466 XIRP1Q702N8 1843 aaKnown RBP21.54■■□□□ 1.04
VIPAS39-210ENST00000557466 PTPRUQ92729 1446 aa21.54■■□□□ 1.04
VIPAS39-210ENST00000557466 NKTRP30414 1462 aaKnown RBP21.53■■□□□ 1.04
VIPAS39-210ENST00000557466 METP08581 1390 aa21.53■■□□□ 1.04
VIPAS39-210ENST00000557466 PIK3R4Q99570 1358 aa21.53■■□□□ 1.04
VIPAS39-210ENST00000557466 KDM2AQ9Y2K7 1162 aa21.52■■□□□ 1.04
VIPAS39-210ENST00000557466 LRRC7Q96NW7 1537 aa21.5■■□□□ 1.03
VIPAS39-210ENST00000557466 KCNA6P17658 529 aa21.5■■□□□ 1.03
VIPAS39-210ENST00000557466 CLSPNQ9HAW4 1339 aa21.5■■□□□ 1.03
VIPAS39-210ENST00000557466 L3MBTL2Q969R5 705 aa21.49■■□□□ 1.03
VIPAS39-210ENST00000557466 KNDC1Q76NI1 1749 aa21.49■■□□□ 1.03
VIPAS39-210ENST00000557466 KIAA1210Q9ULL0 1709 aa21.49■■□□□ 1.03
VIPAS39-210ENST00000557466 CCER1Q8TC90 406 aaPredicted RBP21.48■■□□□ 1.03
VIPAS39-210ENST00000557466 STAC3Q96MF2 364 aa21.48■■□□□ 1.03
VIPAS39-210ENST00000557466 PRAG1Q86YV5 1406 aa21.47■■□□□ 1.03
VIPAS39-210ENST00000557466 TONSLQ96HA7 1378 aa21.47■■□□□ 1.03
VIPAS39-210ENST00000557466 IQSEC2Q5JU85 1478 aa21.46■■□□□ 1.03
VIPAS39-210ENST00000557466 CERKQ8TCT0 537 aa21.46■■□□□ 1.03
VIPAS39-210ENST00000557466 ADGRB1O14514 1584 aa21.45■■□□□ 1.02
VIPAS39-210ENST00000557466 C14orf93Q9H972 538 aaKnown RBP21.45■■□□□ 1.02
VIPAS39-210ENST00000557466 CFAP70Q5T0N1 1121 aa21.44■■□□□ 1.02
VIPAS39-210ENST00000557466 TRPM1Q7Z4N2 1603 aa21.44■■□□□ 1.02
VIPAS39-210ENST00000557466 AMOTL2Q9Y2J4 779 aa21.43■■□□□ 1.02
VIPAS39-210ENST00000557466 PTCH1Q13635 1447 aa21.41■■□□□ 1.02
VIPAS39-210ENST00000557466 YTHDC2Q9H6S0 1430 aaKnown RBP21.4■■□□□ 1.02
VIPAS39-210ENST00000557466 LRPPRCP42704 1394 aaKnown RBP21.4■■□□□ 1.02
VIPAS39-210ENST00000557466 TMEM94Q12767 1356 aa21.4■■□□□ 1.02
VIPAS39-210ENST00000557466 TMEM132EQ6IEE7 984 aa21.4■■□□□ 1.02
VIPAS39-210ENST00000557466 TECPR2O15040 1411 aa21.39■■□□□ 1.02
VIPAS39-210ENST00000557466 NALCNQ8IZF0 1738 aa21.39■■□□□ 1.01
VIPAS39-210ENST00000557466 PROSER2Q86WR7 435 aaPredicted RBP21.39■■□□□ 1.01
VIPAS39-210ENST00000557466 ROBO2Q9HCK4 1378 aa21.37■■□□□ 1.01
VIPAS39-210ENST00000557466 RBM33Q96EV2 1170 aaKnown RBP21.37■■□□□ 1.01
VIPAS39-210ENST00000557466 ARHGEF28Q8N1W1 1705 aaKnown RBP21.36■■□□□ 1.01
VIPAS39-210ENST00000557466 ABCC11Q96J66 1382 aa21.35■■□□□ 1.01
VIPAS39-210ENST00000557466 DLC1Q96QB1 1528 aa21.34■■□□□ 1.01
VIPAS39-210ENST00000557466 STK26Q9P289 416 aa21.34■■□□□ 1.01
VIPAS39-210ENST00000557466 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.34■■□□□ 1.01
VIPAS39-210ENST00000557466 NCOA3Q9Y6Q9 1424 aa21.33■■□□□ 1.01
VIPAS39-210ENST00000557466 NBPF8Q3BBV2 869 aa21.33■■□□□ 1.01
VIPAS39-210ENST00000557466 RALGAPBQ86X10 1494 aa21.31■■□□□ 1
VIPAS39-210ENST00000557466 ADGRL3Q9HAR2 1447 aa21.3■■□□□ 1
VIPAS39-210ENST00000557466 NBPF1Q3BBV0 1214 aa21.3■■□□□ 1
VIPAS39-210ENST00000557466 FAM135BQ49AJ0 1406 aa21.29■■□□□ 1
VIPAS39-210ENST00000557466 PLEKHH1Q9ULM0 1364 aa21.29■■□□□ 1
VIPAS39-210ENST00000557466 MSH6P52701 1360 aa21.28■■□□□ 1
VIPAS39-210ENST00000557466 TIMELESSQ9UNS1 1208 aa21.28■■□□□ 1
VIPAS39-210ENST00000557466 C14orf37Q86TY3 774 aa21.27■■□□□ 1
VIPAS39-210ENST00000557466 ROCK2O75116 1388 aaKnown RBP21.26■□□□□ 0.99
VIPAS39-210ENST00000557466 FBXO41Q8TF61 875 aa21.26■□□□□ 0.99
VIPAS39-210ENST00000557466 CDC42BPGQ6DT37 1551 aa21.25■□□□□ 0.99
VIPAS39-210ENST00000557466 WAPLQ7Z5K2 1190 aa21.25■□□□□ 0.99
VIPAS39-210ENST00000557466 TRAK1Q9UPV9 953 aa21.25■□□□□ 0.99
VIPAS39-210ENST00000557466 GPRASP1Q5JY77 1395 aa21.24■□□□□ 0.99
VIPAS39-210ENST00000557466 DCCP43146 1447 aa21.24■□□□□ 0.99
VIPAS39-210ENST00000557466 UBAP1LF5GYI3 381 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms