RNA–Protein interactions for RNA: ENST00000557084.1

SYNE2-226, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 689 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-226ENST00000557084 KDM5AP29375 1690 aaKnown RBP17.83■□□□□ 0.45
SYNE2-226ENST00000557084 SLC4A1APQ9BWU0 796 aaKnown RBP17.83■□□□□ 0.44
SYNE2-226ENST00000557084 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.82■□□□□ 0.44
SYNE2-226ENST00000557084 SLC26A8Q96RN1 970 aa17.81■□□□□ 0.44
SYNE2-226ENST00000557084 RIMS2Q9UQ26 1411 aa17.81■□□□□ 0.44
SYNE2-226ENST00000557084 ZNF326Q5BKZ1 582 aaKnown RBP17.8■□□□□ 0.44
SYNE2-226ENST00000557084 SCAF1Q9H7N4 1312 aaKnown RBP17.79■□□□□ 0.44
SYNE2-226ENST00000557084 TOM1O60784 492 aa17.79■□□□□ 0.44
SYNE2-226ENST00000557084 NUTM2DQ5VT03 806 aaPredicted RBP17.78■□□□□ 0.44
SYNE2-226ENST00000557084 TMEM131LA2VDJ0 1609 aa17.76■□□□□ 0.43
SYNE2-226ENST00000557084 ZFYVE9O95405 1425 aa17.75■□□□□ 0.43
SYNE2-226ENST00000557084 PIP4K2BP78356 416 aa17.75■□□□□ 0.43
SYNE2-226ENST00000557084 PLEKHG1Q9ULL1 1385 aa17.75■□□□□ 0.43
SYNE2-226ENST00000557084 ACIN1Q9UKV3 1341 aaKnown RBP17.74■□□□□ 0.43
SYNE2-226ENST00000557084 KCNA6P17658 529 aa17.74■□□□□ 0.43
SYNE2-226ENST00000557084 PROSER2Q86WR7 435 aaPredicted RBP17.72■□□□□ 0.43
SYNE2-226ENST00000557084 SPHKAPQ2M3C7 1700 aa17.72■□□□□ 0.43
SYNE2-226ENST00000557084 LRRC7Q96NW7 1537 aa17.72■□□□□ 0.43
SYNE2-226ENST00000557084 MYO5BQ9ULV0 1848 aa17.71■□□□□ 0.43
SYNE2-226ENST00000557084 SETD5Q9C0A6 1442 aa17.71■□□□□ 0.43
SYNE2-226ENST00000557084 MPHOSPH9Q99550 1183 aa17.7■□□□□ 0.42
SYNE2-226ENST00000557084 TBX22Q9Y458 520 aa17.7■□□□□ 0.42
SYNE2-226ENST00000557084 TRPM2O94759 1503 aa17.69■□□□□ 0.42
SYNE2-226ENST00000557084 STRCP1A6NGW2 1772 aa17.67■□□□□ 0.42
SYNE2-226ENST00000557084 TMEM94Q12767 1356 aa17.66■□□□□ 0.42
SYNE2-226ENST00000557084 RBM33Q96EV2 1170 aaKnown RBP17.65■□□□□ 0.42
SYNE2-226ENST00000557084 CLTCL1P53675 1640 aa17.65■□□□□ 0.42
SYNE2-226ENST00000557084 C14orf37Q86TY3 774 aa17.64■□□□□ 0.41
SYNE2-226ENST00000557084 RAB3GAP2Q9H2M9 1393 aa17.64■□□□□ 0.41
SYNE2-226ENST00000557084 VGFO15240 615 aaPredicted RBP17.63■□□□□ 0.41
SYNE2-226ENST00000557084 PPP4R3CPQ6ZMV5 832 aa17.63■□□□□ 0.41
SYNE2-226ENST00000557084 CCDC144AA2RUR9 1427 aa17.63■□□□□ 0.41
SYNE2-226ENST00000557084 ADAMTS13Q76LX8 1427 aa17.62■□□□□ 0.41
SYNE2-226ENST00000557084 NKTRP30414 1462 aaKnown RBP17.62■□□□□ 0.41
SYNE2-226ENST00000557084 HSPA1LP34931 641 aa17.61■□□□□ 0.41
SYNE2-226ENST00000557084 RPGRIP1LQ68CZ1 1315 aa17.61■□□□□ 0.41
SYNE2-226ENST00000557084 PIK3R4Q99570 1358 aa17.61■□□□□ 0.41
SYNE2-226ENST00000557084 KIF1BO60333 1816 aa17.61■□□□□ 0.41
SYNE2-226ENST00000557084 RGL3Q3MIN7 710 aa17.6■□□□□ 0.41
SYNE2-226ENST00000557084 AMOTL2Q9Y2J4 779 aa17.6■□□□□ 0.41
SYNE2-226ENST00000557084 DIP2AQ14689 1571 aa17.6■□□□□ 0.41
SYNE2-226ENST00000557084 MSH6P52701 1360 aa17.59■□□□□ 0.41
SYNE2-226ENST00000557084 NWD1Q149M9 1564 aa17.57■□□□□ 0.4
SYNE2-226ENST00000557084 NEXMIFQ5QGS0 1516 aa17.56■□□□□ 0.4
SYNE2-226ENST00000557084 CHD2O14647 1828 aaKnown RBP17.54■□□□□ 0.4
SYNE2-226ENST00000557084 SETBP1Q9Y6X0 1596 aa17.54■□□□□ 0.4
SYNE2-226ENST00000557084 HRCP23327 699 aa17.54■□□□□ 0.4
SYNE2-226ENST00000557084 DISP3Q9P2K9 1392 aa17.53■□□□□ 0.4
SYNE2-226ENST00000557084 ATF3P18847 181 aa17.53■□□□□ 0.4
SYNE2-226ENST00000557084 METP08581 1390 aa17.53■□□□□ 0.4
SYNE2-226ENST00000557084 ALKQ9UM73 1620 aa17.52■□□□□ 0.4
SYNE2-226ENST00000557084 C19orf44Q9H6X5 657 aa17.52■□□□□ 0.4
SYNE2-226ENST00000557084 SLAIN2Q9P270 581 aa17.52■□□□□ 0.4
SYNE2-226ENST00000557084 NCOA3Q9Y6Q9 1424 aa17.52■□□□□ 0.4
SYNE2-226ENST00000557084 XIRP1Q702N8 1843 aaKnown RBP17.51■□□□□ 0.39
SYNE2-226ENST00000557084 MAPK8IP2Q13387 824 aaPredicted RBP17.51■□□□□ 0.39
SYNE2-226ENST00000557084 PTPRUQ92729 1446 aa17.51■□□□□ 0.39
SYNE2-226ENST00000557084 CADPS2Q86UW7 1296 aa17.5■□□□□ 0.39
SYNE2-226ENST00000557084 ANKRD30BQ9BXX2 1392 aa17.5■□□□□ 0.39
SYNE2-226ENST00000557084 FAM135BQ49AJ0 1406 aa17.49■□□□□ 0.39
SYNE2-226ENST00000557084 NRXN3Q9Y4C0 1643 aa17.49■□□□□ 0.39
SYNE2-226ENST00000557084 SPATA31E1Q6ZUB1 1445 aa17.48■□□□□ 0.39
SYNE2-226ENST00000557084 ADGRF5Q8IZF2 1346 aa17.47■□□□□ 0.39
SYNE2-226ENST00000557084 PPLO60437 1756 aa17.44■□□□□ 0.38
SYNE2-226ENST00000557084 STK26Q9P289 416 aa17.43■□□□□ 0.38
SYNE2-226ENST00000557084 XRN1Q8IZH2 1706 aaKnown RBP17.42■□□□□ 0.38
SYNE2-226ENST00000557084 ROBO1Q9Y6N7 1651 aa17.4■□□□□ 0.38
SYNE2-226ENST00000557084 DCCP43146 1447 aa17.39■□□□□ 0.38
SYNE2-226ENST00000557084 TMEM132EQ6IEE7 984 aa17.39■□□□□ 0.37
SYNE2-226ENST00000557084 ROBO2Q9HCK4 1378 aa17.39■□□□□ 0.37
SYNE2-226ENST00000557084 PTCH1Q13635 1447 aa17.38■□□□□ 0.37
SYNE2-226ENST00000557084 ADGRL3Q9HAR2 1447 aa17.38■□□□□ 0.37
SYNE2-226ENST00000557084 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.38■□□□□ 0.37
SYNE2-226ENST00000557084 KDM2AQ9Y2K7 1162 aa17.38■□□□□ 0.37
SYNE2-226ENST00000557084 PIK3C2GO75747 1445 aa17.38■□□□□ 0.37
SYNE2-226ENST00000557084 DCAF11Q8TEB1 546 aa17.37■□□□□ 0.37
SYNE2-226ENST00000557084 C14orf93Q9H972 538 aaKnown RBP17.36■□□□□ 0.37
SYNE2-226ENST00000557084 CFAP70Q5T0N1 1121 aa17.35■□□□□ 0.37
SYNE2-226ENST00000557084 BRINP3Q76B58 766 aa17.35■□□□□ 0.37
SYNE2-226ENST00000557084 LRPPRCP42704 1394 aaKnown RBP17.35■□□□□ 0.37
SYNE2-226ENST00000557084 SETD1AO15047 1707 aaKnown RBP17.33■□□□□ 0.37
SYNE2-226ENST00000557084 IFT172Q9UG01 1749 aa17.33■□□□□ 0.37
SYNE2-226ENST00000557084 MED1Q15648 1581 aaPredicted RBP17.33■□□□□ 0.37
SYNE2-226ENST00000557084 MYOM2P54296 1465 aa17.33■□□□□ 0.37
SYNE2-226ENST00000557084 DHX57Q6P158 1386 aaKnown RBP17.33■□□□□ 0.36
SYNE2-226ENST00000557084 STAC3Q96MF2 364 aa17.33■□□□□ 0.36
SYNE2-226ENST00000557084 ABCC11Q96J66 1382 aa17.32■□□□□ 0.36
SYNE2-226ENST00000557084 WAPLQ7Z5K2 1190 aa17.32■□□□□ 0.36
SYNE2-226ENST00000557084 MST1RQ04912 1400 aa17.31■□□□□ 0.36
SYNE2-226ENST00000557084 PRAG1Q86YV5 1406 aa17.31■□□□□ 0.36
SYNE2-226ENST00000557084 YTHDC2Q9H6S0 1430 aaKnown RBP17.31■□□□□ 0.36
SYNE2-226ENST00000557084 JCADQ9P266 1359 aa17.31■□□□□ 0.36
SYNE2-226ENST00000557084 PHLPP1O60346 1717 aa17.3■□□□□ 0.36
SYNE2-226ENST00000557084 ILDR2Q71H61 639 aa17.3■□□□□ 0.36
SYNE2-226ENST00000557084 NRXN1Q9ULB1 1477 aa17.3■□□□□ 0.36
SYNE2-226ENST00000557084 NALCNQ8IZF0 1738 aa17.28■□□□□ 0.36
SYNE2-226ENST00000557084 POGKQ9P215 609 aa17.28■□□□□ 0.36
SYNE2-226ENST00000557084 TECPR2O15040 1411 aa17.28■□□□□ 0.36
SYNE2-226ENST00000557084 ASXL1Q8IXJ9 1541 aa17.27■□□□□ 0.36
SYNE2-226ENST00000557084 C1orf167Q5SNV9 1468 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms