RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 LTKP29376 864 aa20.32■□□□□ 0.84
VIPAS39-208ENST00000556412 BCANQ96GW7 911 aa20.31■□□□□ 0.84
VIPAS39-208ENST00000556412 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.3■□□□□ 0.84
VIPAS39-208ENST00000556412 SLIT1O75093 1534 aa20.3■□□□□ 0.84
VIPAS39-208ENST00000556412 ARHGAP23Q9P227 1491 aa20.3■□□□□ 0.84
VIPAS39-208ENST00000556412 RPGRIP1LQ68CZ1 1315 aa20.3■□□□□ 0.84
VIPAS39-208ENST00000556412 DCAF11Q8TEB1 546 aa20.3■□□□□ 0.84
VIPAS39-208ENST00000556412 KDM2AQ9Y2K7 1162 aa20.3■□□□□ 0.84
VIPAS39-208ENST00000556412 KDM5AP29375 1690 aaKnown RBP20.29■□□□□ 0.84
VIPAS39-208ENST00000556412 TONSLQ96HA7 1378 aa20.29■□□□□ 0.84
VIPAS39-208ENST00000556412 KIF1BO60333 1816 aa20.29■□□□□ 0.84
VIPAS39-208ENST00000556412 ZFYVE9O95405 1425 aa20.28■□□□□ 0.84
VIPAS39-208ENST00000556412 SCAF11Q99590 1463 aaKnown RBP20.28■□□□□ 0.84
VIPAS39-208ENST00000556412 VGFO15240 615 aaPredicted RBP20.26■□□□□ 0.83
VIPAS39-208ENST00000556412 L3MBTL2Q969R5 705 aa20.26■□□□□ 0.83
VIPAS39-208ENST00000556412 NEXMIFQ5QGS0 1516 aa20.25■□□□□ 0.83
VIPAS39-208ENST00000556412 NEURL4Q96JN8 1562 aa20.25■□□□□ 0.83
VIPAS39-208ENST00000556412 MYO5BQ9ULV0 1848 aa20.24■□□□□ 0.83
VIPAS39-208ENST00000556412 ADGRF5Q8IZF2 1346 aa20.23■□□□□ 0.83
VIPAS39-208ENST00000556412 NPHP4O75161 1426 aaPredicted RBP20.22■□□□□ 0.83
VIPAS39-208ENST00000556412 PLEKHG1Q9ULL1 1385 aa20.21■□□□□ 0.83
VIPAS39-208ENST00000556412 SLC26A8Q96RN1 970 aa20.2■□□□□ 0.82
VIPAS39-208ENST00000556412 DMRT2Q9Y5R5 561 aa20.18■□□□□ 0.82
VIPAS39-208ENST00000556412 MYOM2P54296 1465 aa20.17■□□□□ 0.82
VIPAS39-208ENST00000556412 MED14O60244 1454 aa20.16■□□□□ 0.82
VIPAS39-208ENST00000556412 STAC3Q96MF2 364 aa20.16■□□□□ 0.82
VIPAS39-208ENST00000556412 POLR1AO95602 1720 aaPredicted RBP20.14■□□□□ 0.82
VIPAS39-208ENST00000556412 PPLO60437 1756 aa20.14■□□□□ 0.82
VIPAS39-208ENST00000556412 STRCQ7RTU9 1775 aa20.14■□□□□ 0.81
VIPAS39-208ENST00000556412 TIMELESSQ9UNS1 1208 aa20.13■□□□□ 0.81
VIPAS39-208ENST00000556412 PIK3C2GO75747 1445 aa20.13■□□□□ 0.81
VIPAS39-208ENST00000556412 CFAP70Q5T0N1 1121 aa20.12■□□□□ 0.81
VIPAS39-208ENST00000556412 IQGAP1P46940 1657 aa20.12■□□□□ 0.81
VIPAS39-208ENST00000556412 ADAMTS13Q76LX8 1427 aa20.12■□□□□ 0.81
VIPAS39-208ENST00000556412 IFT172Q9UG01 1749 aa20.11■□□□□ 0.81
VIPAS39-208ENST00000556412 NRXN1Q9ULB1 1477 aa20.11■□□□□ 0.81
VIPAS39-208ENST00000556412 PRAG1Q86YV5 1406 aa20.1■□□□□ 0.81
VIPAS39-208ENST00000556412 TBX22Q9Y458 520 aa20.1■□□□□ 0.81
VIPAS39-208ENST00000556412 SETBP1Q9Y6X0 1596 aa20.09■□□□□ 0.81
VIPAS39-208ENST00000556412 NBPF8Q3BBV2 869 aa20.08■□□□□ 0.8
VIPAS39-208ENST00000556412 C14orf93Q9H972 538 aaKnown RBP20.08■□□□□ 0.8
VIPAS39-208ENST00000556412 TMEM132EQ6IEE7 984 aa20.07■□□□□ 0.8
VIPAS39-208ENST00000556412 METP08581 1390 aa20.07■□□□□ 0.8
VIPAS39-208ENST00000556412 ALKQ9UM73 1620 aa20.06■□□□□ 0.8
VIPAS39-208ENST00000556412 NRXN3Q9Y4C0 1643 aa20.06■□□□□ 0.8
VIPAS39-208ENST00000556412 ZNF335Q9H4Z2 1342 aaPredicted RBP20.05■□□□□ 0.8
VIPAS39-208ENST00000556412 DIP2AQ14689 1571 aa20.04■□□□□ 0.8
VIPAS39-208ENST00000556412 STK26Q9P289 416 aa20.04■□□□□ 0.8
VIPAS39-208ENST00000556412 NBPF1Q3BBV0 1214 aa20.03■□□□□ 0.8
VIPAS39-208ENST00000556412 AMOTL2Q9Y2J4 779 aa20.02■□□□□ 0.79
VIPAS39-208ENST00000556412 ROCK2O75116 1388 aaKnown RBP20■□□□□ 0.79
VIPAS39-208ENST00000556412 KCNA6P17658 529 aa20■□□□□ 0.79
VIPAS39-208ENST00000556412 PIK3R4Q99570 1358 aa20■□□□□ 0.79
VIPAS39-208ENST00000556412 PTPRUQ92729 1446 aa19.99■□□□□ 0.79
VIPAS39-208ENST00000556412 ASXL1Q8IXJ9 1541 aa19.98■□□□□ 0.79
VIPAS39-208ENST00000556412 LAMC1P11047 1609 aa19.97■□□□□ 0.79
VIPAS39-208ENST00000556412 TRAK1Q9UPV9 953 aa19.97■□□□□ 0.79
VIPAS39-208ENST00000556412 YTHDC2Q9H6S0 1430 aaKnown RBP19.97■□□□□ 0.79
VIPAS39-208ENST00000556412 CARD11Q9BXL7 1154 aa19.96■□□□□ 0.79
VIPAS39-208ENST00000556412 LRPPRCP42704 1394 aaKnown RBP19.95■□□□□ 0.78
VIPAS39-208ENST00000556412 RBM33Q96EV2 1170 aaKnown RBP19.95■□□□□ 0.78
VIPAS39-208ENST00000556412 ADGRB1O14514 1584 aa19.95■□□□□ 0.78
VIPAS39-208ENST00000556412 RALGAPBQ86X10 1494 aa19.95■□□□□ 0.78
VIPAS39-208ENST00000556412 PROSER2Q86WR7 435 aaPredicted RBP19.94■□□□□ 0.78
VIPAS39-208ENST00000556412 SETD1AO15047 1707 aaKnown RBP19.94■□□□□ 0.78
VIPAS39-208ENST00000556412 TRPM1Q7Z4N2 1603 aa19.93■□□□□ 0.78
VIPAS39-208ENST00000556412 ZEB1P37275 1124 aaPredicted RBP19.92■□□□□ 0.78
VIPAS39-208ENST00000556412 ROBO2Q9HCK4 1378 aa19.91■□□□□ 0.78
VIPAS39-208ENST00000556412 ABCC11Q96J66 1382 aa19.91■□□□□ 0.78
VIPAS39-208ENST00000556412 SAFB2Q14151 953 aaKnown RBP eCLIP19.9■□□□□ 0.78
VIPAS39-208ENST00000556412 WAPLQ7Z5K2 1190 aa19.9■□□□□ 0.78
VIPAS39-208ENST00000556412 C14orf37Q86TY3 774 aa19.9■□□□□ 0.78
VIPAS39-208ENST00000556412 POGKQ9P215 609 aa19.9■□□□□ 0.78
VIPAS39-208ENST00000556412 NWD1Q149M9 1564 aa19.9■□□□□ 0.78
VIPAS39-208ENST00000556412 KIAA1210Q9ULL0 1709 aa19.9■□□□□ 0.78
VIPAS39-208ENST00000556412 NKTRP30414 1462 aaKnown RBP19.89■□□□□ 0.78
VIPAS39-208ENST00000556412 PRAM1Q96QH2 718 aa19.89■□□□□ 0.77
VIPAS39-208ENST00000556412 GPRASP1Q5JY77 1395 aa19.89■□□□□ 0.77
VIPAS39-208ENST00000556412 TMEM94Q12767 1356 aa19.88■□□□□ 0.77
VIPAS39-208ENST00000556412 TECPR2O15040 1411 aa19.87■□□□□ 0.77
VIPAS39-208ENST00000556412 PTCH1Q13635 1447 aa19.87■□□□□ 0.77
VIPAS39-208ENST00000556412 CPS1P31327 1500 aa19.87■□□□□ 0.77
VIPAS39-208ENST00000556412 XRN1Q8IZH2 1706 aaKnown RBP19.87■□□□□ 0.77
VIPAS39-208ENST00000556412 PLEKHH1Q9ULM0 1364 aa19.86■□□□□ 0.77
VIPAS39-208ENST00000556412 LTBP4Q8N2S1 1624 aa19.86■□□□□ 0.77
VIPAS39-208ENST00000556412 LRRC7Q96NW7 1537 aa19.85■□□□□ 0.77
VIPAS39-208ENST00000556412 CHD2O14647 1828 aaKnown RBP19.85■□□□□ 0.77
VIPAS39-208ENST00000556412 EIF3AQ14152 1382 aaKnown RBP19.84■□□□□ 0.77
VIPAS39-208ENST00000556412 STRCP1A6NGW2 1772 aa19.84■□□□□ 0.77
VIPAS39-208ENST00000556412 FAM135BQ49AJ0 1406 aa19.83■□□□□ 0.76
VIPAS39-208ENST00000556412 SIRT1Q96EB6 747 aa19.83■□□□□ 0.76
VIPAS39-208ENST00000556412 DLC1Q96QB1 1528 aa19.82■□□□□ 0.76
VIPAS39-208ENST00000556412 CENPJQ9HC77 1338 aaPredicted RBP19.82■□□□□ 0.76
VIPAS39-208ENST00000556412 USP47Q96K76 1375 aa19.82■□□□□ 0.76
VIPAS39-208ENST00000556412 HIRIP3Q9BW71 556 aaPredicted RBP19.81■□□□□ 0.76
VIPAS39-208ENST00000556412 MINK1Q8N4C8 1332 aaPredicted RBP19.81■□□□□ 0.76
VIPAS39-208ENST00000556412 CERKQ8TCT0 537 aa19.79■□□□□ 0.76
VIPAS39-208ENST00000556412 KNDC1Q76NI1 1749 aa19.79■□□□□ 0.76
VIPAS39-208ENST00000556412 ST20-MTHFSA0A0A6YYL1 179 aa19.78■□□□□ 0.76
VIPAS39-208ENST00000556412 MSH6P52701 1360 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms