RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 PRKRIP1Q9H875 184 aaPredicted RBP13.12□□□□□ -0.31
ACTN1-216ENST00000556083 CNTLNQ9NXG0 1405 aa13.12□□□□□ -0.31
ACTN1-216ENST00000556083 TOMM22Q9NS69 142 aa13.11□□□□□ -0.31
ACTN1-216ENST00000556083 RUNDC1Q96C34 613 aa13.11□□□□□ -0.31
ACTN1-216ENST00000556083 TRIM34Q9BYJ4 488 aa13.11□□□□□ -0.31
ACTN1-216ENST00000556083 C9orf78Q9NZ63 289 aaPredicted RBP13.11□□□□□ -0.31
ACTN1-216ENST00000556083 TPD52L1Q16890 204 aaPredicted RBP13.1□□□□□ -0.31
ACTN1-216ENST00000556083 WIZO95785 1651 aa13.1□□□□□ -0.31
ACTN1-216ENST00000556083 DHX8Q14562 1220 aaKnown RBP13.1□□□□□ -0.31
ACTN1-216ENST00000556083 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.09□□□□□ -0.31
ACTN1-216ENST00000556083 BECN2A8MW95 431 aa13.09□□□□□ -0.31
ACTN1-216ENST00000556083 A0A0U1RQG5 324 aaPredicted RBP13.09□□□□□ -0.31
ACTN1-216ENST00000556083 NUCB2P80303 420 aa13.09□□□□□ -0.31
ACTN1-216ENST00000556083 G3BP1Q13283 466 aaKnown RBP eCLIP13.09□□□□□ -0.312e-7■□□□□ 10.9
ACTN1-216ENST00000556083 CTDP1Q9Y5B0 961 aaPredicted RBP13.09□□□□□ -0.31
ACTN1-216ENST00000556083 IFIT2P09913 472 aaKnown RBP13.08□□□□□ -0.32
ACTN1-216ENST00000556083 DEKP35659 375 aaKnown RBP13.08□□□□□ -0.32
ACTN1-216ENST00000556083 RAPGEF4Q8WZA2 1011 aa13.08□□□□□ -0.32
ACTN1-216ENST00000556083 FGD6Q6ZV73 1430 aa13.08□□□□□ -0.32
ACTN1-216ENST00000556083 CT47B1P0C2W7 299 aaPredicted RBP13.07□□□□□ -0.32
ACTN1-216ENST00000556083 DZIP1LQ8IYY4 767 aaKnown RBP13.07□□□□□ -0.32
ACTN1-216ENST00000556083 ERICH2A1L162 156 aa13.07□□□□□ -0.32
ACTN1-216ENST00000556083 RRP1P56182 461 aaKnown RBP13.07□□□□□ -0.32
ACTN1-216ENST00000556083 TCEAL9Q9UHQ7 104 aa13.07□□□□□ -0.32
ACTN1-216ENST00000556083 CASKIN1Q8WXD9 1431 aa13.07□□□□□ -0.32
ACTN1-216ENST00000556083 PSME1Q06323 249 aa13.07□□□□□ -0.32
ACTN1-216ENST00000556083 SLKQ9H2G2 1235 aaPredicted RBP13.07□□□□□ -0.32
ACTN1-216ENST00000556083 IGF1RP08069 1367 aa13.06□□□□□ -0.32
ACTN1-216ENST00000556083 HIP1O00291 1037 aa13.06□□□□□ -0.32
ACTN1-216ENST00000556083 CPLX1O14810 134 aa13.06□□□□□ -0.32
ACTN1-216ENST00000556083 PDIA4P13667 645 aaKnown RBP13.06□□□□□ -0.32
ACTN1-216ENST00000556083 INTS3Q68E01 1043 aaKnown RBP13.06□□□□□ -0.32
ACTN1-216ENST00000556083 GRIN2BQ13224 1484 aa13.06□□□□□ -0.32
ACTN1-216ENST00000556083 SAFBQ15424 915 aaKnown RBP eCLIP13.06□□□□□ -0.32
ACTN1-216ENST00000556083 CCDC7Q96M83 1385 aa13.06□□□□□ -0.32
ACTN1-216ENST00000556083 NINLQ9Y2I6 1382 aa13.05□□□□□ -0.32
ACTN1-216ENST00000556083 SYNJ2O15056 1496 aa13.05□□□□□ -0.32
ACTN1-216ENST00000556083 ATF3P18847 181 aa13.05□□□□□ -0.32
ACTN1-216ENST00000556083 ANKRD45Q5TZF3 282 aa13.05□□□□□ -0.32
ACTN1-216ENST00000556083 GAS2L2Q8NHY3 880 aa13.05□□□□□ -0.32
ACTN1-216ENST00000556083 BRD4O60885 1362 aaPredicted RBP13.05□□□□□ -0.32
ACTN1-216ENST00000556083 FGD5Q6ZNL6 1462 aa13.05□□□□□ -0.32
ACTN1-216ENST00000556083 ANKRD50Q9ULJ7 1429 aa13.05□□□□□ -0.32
ACTN1-216ENST00000556083 XBP1P17861 261 aa13.05□□□□□ -0.32
ACTN1-216ENST00000556083 MCM2P49736 904 aa13.05□□□□□ -0.32
ACTN1-216ENST00000556083 CLUAP1Q96AJ1 413 aa13.05□□□□□ -0.32
ACTN1-216ENST00000556083 ERICH3Q5RHP9 1530 aa13.05□□□□□ -0.32
ACTN1-216ENST00000556083 GPRASP1Q5JY77 1395 aa13.05□□□□□ -0.32
ACTN1-216ENST00000556083 KIF21BO75037 1637 aa13.04□□□□□ -0.32
ACTN1-216ENST00000556083 CDR1P51861 262 aa13.04□□□□□ -0.32
ACTN1-216ENST00000556083 EFCAB5A4FU69 1503 aa13.04□□□□□ -0.32
ACTN1-216ENST00000556083 GNAI3P08754 354 aa13.04□□□□□ -0.32
ACTN1-216ENST00000556083 PNISRQ8TF01 805 aaKnown RBP13.04□□□□□ -0.32
ACTN1-216ENST00000556083 LTV1Q96GA3 475 aaPredicted RBP13.04□□□□□ -0.32
ACTN1-216ENST00000556083 SENP3-EIF4A1A0A087X0R7 540 aa13.04□□□□□ -0.32
ACTN1-216ENST00000556083 RPGRIP1LQ68CZ1 1315 aa13.03□□□□□ -0.32
ACTN1-216ENST00000556083 PSMA5P28066 241 aa13.03□□□□□ -0.32
ACTN1-216ENST00000556083 CCDC146Q8IYE0 955 aa13.03□□□□□ -0.32
ACTN1-216ENST00000556083 CHMP5Q9NZZ3 219 aa13.03□□□□□ -0.32
ACTN1-216ENST00000556083 RILPL2Q969X0 211 aa13.03□□□□□ -0.32
ACTN1-216ENST00000556083 BRMS1Q9HCU9 246 aa13.03□□□□□ -0.32
ACTN1-216ENST00000556083 VPS37DQ86XT2 251 aa13.02□□□□□ -0.32
ACTN1-216ENST00000556083 SPRYD3Q8NCJ5 442 aa13.02□□□□□ -0.32
ACTN1-216ENST00000556083 ZNF692Q9BU19 519 aaPredicted RBP13.02□□□□□ -0.32
ACTN1-216ENST00000556083 DNAJC5BQ9UF47 199 aa13.02□□□□□ -0.32
ACTN1-216ENST00000556083 DDX49Q9Y6V7 483 aaKnown RBP13.02□□□□□ -0.32
ACTN1-216ENST00000556083 SLC52A1Q9NWF4 448 aa13.02□□□□□ -0.33
ACTN1-216ENST00000556083 ERC1Q8IUD2 1116 aa13.02□□□□□ -0.33
ACTN1-216ENST00000556083 ZNF428Q96B54 188 aa13.02□□□□□ -0.33
ACTN1-216ENST00000556083 RIPK4P57078 832 aa13.01□□□□□ -0.33
ACTN1-216ENST00000556083 VPS53Q5VIR6 699 aa13.01□□□□□ -0.33
ACTN1-216ENST00000556083 SMG6Q86US8 1419 aaKnown RBP13□□□□□ -0.33
ACTN1-216ENST00000556083 KIF7Q2M1P5 1343 aa13□□□□□ -0.33
ACTN1-216ENST00000556083 SETQ01105 290 aaPredicted RBP13□□□□□ -0.33
ACTN1-216ENST00000556083 LETM1O95202 739 aaPredicted RBP13□□□□□ -0.33
ACTN1-216ENST00000556083 RDXP35241 583 aaKnown RBP13□□□□□ -0.33
ACTN1-216ENST00000556083 PIP4K2AP48426 406 aaPredicted RBP13□□□□□ -0.33
ACTN1-216ENST00000556083 MINK1Q8N4C8 1332 aaPredicted RBP13□□□□□ -0.33
ACTN1-216ENST00000556083 PDCP20941 246 aa13□□□□□ -0.33
ACTN1-216ENST00000556083 ACBD3Q9H3P7 528 aa13□□□□□ -0.33
ACTN1-216ENST00000556083 PDE4AP27815 886 aa12.99□□□□□ -0.33
ACTN1-216ENST00000556083 FKBP5Q13451 457 aaPredicted RBP12.99□□□□□ -0.33
ACTN1-216ENST00000556083 SART3Q15020 963 aaKnown RBP12.99□□□□□ -0.33
ACTN1-216ENST00000556083 RALYLQ86SE5 291 aaKnown RBP12.99□□□□□ -0.33
ACTN1-216ENST00000556083 POGZQ7Z3K3 1410 aa12.99□□□□□ -0.33
ACTN1-216ENST00000556083 TNNT3P45378 269 aaPredicted RBP12.99□□□□□ -0.33
ACTN1-216ENST00000556083 NAT10Q9H0A0 1025 aaKnown RBP12.98□□□□□ -0.33
ACTN1-216ENST00000556083 PLEKHO1Q53GL0 409 aaPredicted RBP12.98□□□□□ -0.33
ACTN1-216ENST00000556083 DHX16O60231 1041 aaKnown RBP12.98□□□□□ -0.33
ACTN1-216ENST00000556083 CCDC30Q5VVM6 783 aa12.98□□□□□ -0.33
ACTN1-216ENST00000556083 APAF1O14727 1248 aa12.98□□□□□ -0.33
ACTN1-216ENST00000556083 SLC3A2P08195 630 aaKnown RBP12.98□□□□□ -0.33
ACTN1-216ENST00000556083 CCDC73Q6ZRK6 1079 aa12.98□□□□□ -0.33
ACTN1-216ENST00000556083 RBM33Q96EV2 1170 aaKnown RBP12.98□□□□□ -0.33
ACTN1-216ENST00000556083 THEMISQ8N1K5 641 aaPredicted RBP12.97□□□□□ -0.33
ACTN1-216ENST00000556083 TSPYL4Q9UJ04 414 aa12.97□□□□□ -0.33
ACTN1-216ENST00000556083 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.97□□□□□ -0.33
ACTN1-216ENST00000556083 LRRC9Q6ZRR7 1453 aa12.97□□□□□ -0.33
ACTN1-216ENST00000556083 IFT140Q96RY7 1462 aa12.97□□□□□ -0.33
ACTN1-216ENST00000556083 CCDC43Q96MW1 224 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms