RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 CLCN1P35523 988 aa11.28□□□□□ -0.6
SCFD1-211ENST00000554437 HDGFP51858 240 aaKnown RBP11.28□□□□□ -0.6
SCFD1-211ENST00000554437 PARP9Q8IXQ6 854 aa11.27□□□□□ -0.61
SCFD1-211ENST00000554437 TMEM134Q9H6X4 195 aa11.27□□□□□ -0.61
SCFD1-211ENST00000554437 GPBP1L1Q9HC44 474 aaPredicted RBP11.27□□□□□ -0.61
SCFD1-211ENST00000554437 GPCPD1Q9NPB8 672 aa11.27□□□□□ -0.61
SCFD1-211ENST00000554437 ZFRQ96KR1 1074 aaKnown RBP11.26□□□□□ -0.61
SCFD1-211ENST00000554437 REPIN1Q9BWE0 567 aaKnown RBP11.25□□□□□ -0.61
SCFD1-211ENST00000554437 DAXXQ9UER7 740 aaPredicted RBP11.25□□□□□ -0.61
SCFD1-211ENST00000554437 SWT1Q5T5J6 900 aaKnown RBP11.24□□□□□ -0.61
SCFD1-211ENST00000554437 GIGYF2Q6Y7W6 1299 aaKnown RBP11.24□□□□□ -0.61
SCFD1-211ENST00000554437 SAMD7Q7Z3H4 446 aa11.23□□□□□ -0.61
SCFD1-211ENST00000554437 TMUB1Q9BVT8 246 aa11.23□□□□□ -0.61
SCFD1-211ENST00000554437 KDM4CQ9H3R0 1056 aa11.23□□□□□ -0.61
SCFD1-211ENST00000554437 ANKK1Q8NFD2 765 aa11.21□□□□□ -0.61
SCFD1-211ENST00000554437 DDX11L8A8MPP1 907 aa11.2□□□□□ -0.62
SCFD1-211ENST00000554437 SSTR3P32745 418 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-211ENST00000554437 SLC4A3P48751 1232 aa11.2□□□□□ -0.62
SCFD1-211ENST00000554437 FAM217BQ9NTX9 383 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-211ENST00000554437 RNF40O75150 1001 aa11.19□□□□□ -0.62
SCFD1-211ENST00000554437 WNT2BQ93097 391 aa11.19□□□□□ -0.62
SCFD1-211ENST00000554437 LRCH3Q96II8 777 aa11.19□□□□□ -0.62
SCFD1-211ENST00000554437 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-211ENST00000554437 SULF1Q8IWU6 871 aa11.18□□□□□ -0.62
SCFD1-211ENST00000554437 SLF2Q8IX21 1173 aa11.18□□□□□ -0.62
SCFD1-211ENST00000554437 MS4A1P11836 297 aa11.17□□□□□ -0.62
SCFD1-211ENST00000554437 RSPH4AQ5TD94 716 aa11.16□□□□□ -0.62
SCFD1-211ENST00000554437 RDH13Q8NBN7 331 aa11.16□□□□□ -0.62
SCFD1-211ENST00000554437 KCTD12Q96CX2 325 aaKnown RBP11.16□□□□□ -0.62
SCFD1-211ENST00000554437 SOWAHBA6NEL2 793 aa11.15□□□□□ -0.62
SCFD1-211ENST00000554437 BCAMP50895 628 aa11.15□□□□□ -0.62
SCFD1-211ENST00000554437 FAM117AQ9C073 453 aa11.13□□□□□ -0.63
SCFD1-211ENST00000554437 SLC10A3P09131 477 aa11.12□□□□□ -0.63
SCFD1-211ENST00000554437 CD46P15529 392 aa11.12□□□□□ -0.63
SCFD1-211ENST00000554437 IL27Q8NEV9 243 aa11.12□□□□□ -0.63
SCFD1-211ENST00000554437 BEGAINQ9BUH8 593 aa11.12□□□□□ -0.63
SCFD1-211ENST00000554437 DDRGK1Q96HY6 314 aa11.11□□□□□ -0.63
SCFD1-211ENST00000554437 IRX2Q9BZI1 471 aaPredicted RBP11.11□□□□□ -0.63
SCFD1-211ENST00000554437 HPS5Q9UPZ3 1129 aa11.11□□□□□ -0.63
SCFD1-211ENST00000554437 PPP4CP60510 307 aa11.1□□□□□ -0.63
SCFD1-211ENST00000554437 THSD4Q6ZMP0 1018 aa11.1□□□□□ -0.63
SCFD1-211ENST00000554437 NECTIN2Q92692 538 aa11.1□□□□□ -0.63
SCFD1-211ENST00000554437 TSR3Q9UJK0 312 aaKnown RBP11.09□□□□□ -0.63
SCFD1-211ENST00000554437 CFHP08603 1231 aa11.07□□□□□ -0.64
SCFD1-211ENST00000554437 GCGRP47871 477 aa11.06□□□□□ -0.64
SCFD1-211ENST00000554437 PTPN5P54829 565 aa11.06□□□□□ -0.64
SCFD1-211ENST00000554437 PLEKHG3A1L390 1219 aa11.05□□□□□ -0.64
SCFD1-211ENST00000554437 RGS20O76081 388 aa11.05□□□□□ -0.64
SCFD1-211ENST00000554437 KMT5BQ4FZB7 885 aa11.05□□□□□ -0.64
SCFD1-211ENST00000554437 NUTM1Q86Y26 1132 aa11.05□□□□□ -0.64
SCFD1-211ENST00000554437 WBP1LQ9NX94 342 aa11.05□□□□□ -0.64
SCFD1-211ENST00000554437 KDM4AO75164 1064 aa11.03□□□□□ -0.64
SCFD1-211ENST00000554437 SPIRE2Q8WWL2 714 aa11.02□□□□□ -0.65
SCFD1-211ENST00000554437 PRR14Q9BWN1 585 aa11.02□□□□□ -0.65
SCFD1-211ENST00000554437 TBC1D2Q9BYX2 928 aa11.02□□□□□ -0.65
SCFD1-211ENST00000554437 DIXDC1Q155Q3 683 aa11.01□□□□□ -0.65
SCFD1-211ENST00000554437 RSPH6AQ9H0K4 717 aa11.01□□□□□ -0.65
SCFD1-211ENST00000554437 APLP1P51693 650 aa11□□□□□ -0.65
SCFD1-211ENST00000554437 TMEM132AQ24JP5 1023 aa11□□□□□ -0.65
SCFD1-211ENST00000554437 ACTN4O43707 911 aaKnown RBP10.99□□□□□ -0.65
SCFD1-211ENST00000554437 USP46P62068 366 aa10.99□□□□□ -0.65
SCFD1-211ENST00000554437 FUT2Q10981 343 aa10.99□□□□□ -0.65
SCFD1-211ENST00000554437 IFFO2Q5TF58 517 aa10.98□□□□□ -0.65
SCFD1-211ENST00000554437 GRIPAP1Q4V328 841 aa10.97□□□□□ -0.65
SCFD1-211ENST00000554437 NYAP1Q6ZVC0 841 aa10.97□□□□□ -0.65
SCFD1-211ENST00000554437 ATP6V1AP38606 617 aa10.96□□□□□ -0.65
SCFD1-211ENST00000554437 MYSM1Q5VVJ2 828 aa10.96□□□□□ -0.65
SCFD1-211ENST00000554437 POLR3EQ9NVU0 708 aa10.96□□□□□ -0.65
SCFD1-211ENST00000554437 ATP1B4Q9UN42 357 aaPredicted RBP10.96□□□□□ -0.65
SCFD1-211ENST00000554437 A0A0G2JS52 829 aa10.95□□□□□ -0.66
SCFD1-211ENST00000554437 MOXD2PA6NHM9 499 aa10.95□□□□□ -0.66
SCFD1-211ENST00000554437 HOXA2O43364 376 aa10.95□□□□□ -0.66
SCFD1-211ENST00000554437 SH3D19Q5HYK7 790 aa10.95□□□□□ -0.66
SCFD1-211ENST00000554437 PCDHB3Q9Y5E6 796 aa10.95□□□□□ -0.66
SCFD1-211ENST00000554437 NDUFV2P19404 249 aa10.94□□□□□ -0.66
SCFD1-211ENST00000554437 SKIV2LQ15477 1246 aaKnown RBP10.94□□□□□ -0.66
SCFD1-211ENST00000554437 PUS10Q3MIT2 529 aaKnown RBP10.94□□□□□ -0.66
SCFD1-211ENST00000554437 RIC3Q7Z5B4 369 aa10.93□□□□□ -0.66
SCFD1-211ENST00000554437 CLK2P49760 499 aaKnown RBP10.92□□□□□ -0.66
SCFD1-211ENST00000554437 HLA-CQ95604 372 aa10.92□□□□□ -0.66
SCFD1-211ENST00000554437 GOPCQ9HD26 462 aa10.92□□□□□ -0.66
SCFD1-211ENST00000554437 FDX1P10109 184 aa10.91□□□□□ -0.66
SCFD1-211ENST00000554437 GUCA2AQ02747 115 aa10.91□□□□□ -0.66
SCFD1-211ENST00000554437 MORN1Q5T089 497 aa10.91□□□□□ -0.66
SCFD1-211ENST00000554437 RSBN1LQ6PCB5 846 aaPredicted RBP10.91□□□□□ -0.66
SCFD1-211ENST00000554437 PCMTD1Q96MG8 357 aaPredicted RBP10.91□□□□□ -0.66
SCFD1-211ENST00000554437 SPTLC1O15269 473 aa10.9□□□□□ -0.66
SCFD1-211ENST00000554437 BLOC1S3Q6QNY0 202 aa10.9□□□□□ -0.66
SCFD1-211ENST00000554437 LIMD1Q9UGP4 676 aa10.9□□□□□ -0.66
SCFD1-211ENST00000554437 COPS2P61201 443 aa10.89□□□□□ -0.67
SCFD1-211ENST00000554437 NR1I2O75469 434 aa10.88□□□□□ -0.67
SCFD1-211ENST00000554437 GJA5P36382 358 aa10.88□□□□□ -0.67
SCFD1-211ENST00000554437 CSPP1Q1MSJ5 1256 aa10.88□□□□□ -0.67
SCFD1-211ENST00000554437 PROCA1Q8NCQ7 364 aaPredicted RBP10.88□□□□□ -0.67
SCFD1-211ENST00000554437 SLC27A5Q9Y2P5 690 aa10.88□□□□□ -0.67
SCFD1-211ENST00000554437 PCDHB15Q9Y5E8 787 aa10.87□□□□□ -0.67
SCFD1-211ENST00000554437 SCUBE3Q8IX30 993 aa10.86□□□□□ -0.67
SCFD1-211ENST00000554437 MTRQ99707 1265 aa10.86□□□□□ -0.67
SCFD1-211ENST00000554437 PCDHGC3Q9UN70 934 aa10.86□□□□□ -0.67
SCFD1-211ENST00000554437 Q6ZNB5 142 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms