RNA–Protein interactions for RNA: ENST00000554226.5

NEDD1-206, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 2

Gene NEDD1, Length 582 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-206ENST00000554226 SLC52A1Q9NWF4 448 aa21.88■■□□□ 1.09
NEDD1-206ENST00000554226 ZFYVE9O95405 1425 aa21.88■■□□□ 1.09
NEDD1-206ENST00000554226 COL16A1Q07092 1604 aaPredicted RBP21.88■■□□□ 1.09
NEDD1-206ENST00000554226 ANKRD30AQ9BXX3 1397 aa21.87■■□□□ 1.09
NEDD1-206ENST00000554226 FGD6Q6ZV73 1430 aa21.87■■□□□ 1.09
NEDD1-206ENST00000554226 SLAIN2Q9P270 581 aa21.86■■□□□ 1.09
NEDD1-206ENST00000554226 NCOA3Q9Y6Q9 1424 aa21.86■■□□□ 1.09
NEDD1-206ENST00000554226 ADGRL2O95490 1459 aa21.85■■□□□ 1.09
NEDD1-206ENST00000554226 PLEKHG1Q9ULL1 1385 aa21.85■■□□□ 1.09
NEDD1-206ENST00000554226 MYO5BQ9ULV0 1848 aa21.84■■□□□ 1.09
NEDD1-206ENST00000554226 LRP6O75581 1613 aa21.83■■□□□ 1.08
NEDD1-206ENST00000554226 TMEM131LA2VDJ0 1609 aa21.82■■□□□ 1.08
NEDD1-206ENST00000554226 GCC2Q8IWJ2 1684 aa21.82■■□□□ 1.08
NEDD1-206ENST00000554226 UPF1Q92900 1129 aaKnown RBP eCLIP21.81■■□□□ 1.08
NEDD1-206ENST00000554226 AHDC1Q5TGY3 1603 aaPredicted RBP21.8■■□□□ 1.08
NEDD1-206ENST00000554226 SPATA31A6Q5VVP1 1343 aa21.8■■□□□ 1.08
NEDD1-206ENST00000554226 SHPRHQ149N8 1683 aa21.79■■□□□ 1.08
NEDD1-206ENST00000554226 DIP2AQ14689 1571 aa21.78■■□□□ 1.08
NEDD1-206ENST00000554226 ZNF772Q68DY9 489 aaPredicted RBP21.76■■□□□ 1.07
NEDD1-206ENST00000554226 RIMS2Q9UQ26 1411 aa21.76■■□□□ 1.07
NEDD1-206ENST00000554226 TBX22Q9Y458 520 aa21.76■■□□□ 1.07
NEDD1-206ENST00000554226 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.75■■□□□ 1.07
NEDD1-206ENST00000554226 PIK3R4Q99570 1358 aa21.74■■□□□ 1.07
NEDD1-206ENST00000554226 HDGFP51858 240 aaKnown RBP21.74■■□□□ 1.07
NEDD1-206ENST00000554226 BCANQ96GW7 911 aa21.74■■□□□ 1.07
NEDD1-206ENST00000554226 ADAMTS13Q76LX8 1427 aa21.72■■□□□ 1.07
NEDD1-206ENST00000554226 ANKRD50Q9ULJ7 1429 aa21.72■■□□□ 1.07
NEDD1-206ENST00000554226 MEX3CQ5U5Q3 659 aaKnown RBP21.72■■□□□ 1.07
NEDD1-206ENST00000554226 TRIM52Q96A61 297 aa21.72■■□□□ 1.07
NEDD1-206ENST00000554226 CHIC2Q9UKJ5 165 aa21.72■■□□□ 1.07
NEDD1-206ENST00000554226 UNC13BO14795 1591 aa21.72■■□□□ 1.07
NEDD1-206ENST00000554226 LOC105371045A0A1W2PR82 267 aa21.71■■□□□ 1.07
NEDD1-206ENST00000554226 CADPS2Q86UW7 1296 aa21.69■■□□□ 1.06
NEDD1-206ENST00000554226 CDK12Q9NYV4 1490 aaPredicted RBP21.69■■□□□ 1.06
NEDD1-206ENST00000554226 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.68■■□□□ 1.06
NEDD1-206ENST00000554226 C19orf44Q9H6X5 657 aa21.68■■□□□ 1.06
NEDD1-206ENST00000554226 E9PCH4 1651 aa21.67■■□□□ 1.06
NEDD1-206ENST00000554226 PPP1R15AO75807 674 aaPredicted RBP21.67■■□□□ 1.06
NEDD1-206ENST00000554226 APLP2Q06481 763 aa21.67■■□□□ 1.06
NEDD1-206ENST00000554226 DCCP43146 1447 aa21.66■■□□□ 1.06
NEDD1-206ENST00000554226 RXRBP28702 533 aa21.66■■□□□ 1.06
NEDD1-206ENST00000554226 TRPM2O94759 1503 aa21.65■■□□□ 1.06
NEDD1-206ENST00000554226 IQGAP3Q86VI3 1631 aa21.63■■□□□ 1.05
NEDD1-206ENST00000554226 C14orf37Q86TY3 774 aa21.63■■□□□ 1.05
NEDD1-206ENST00000554226 XRN1Q8IZH2 1706 aaKnown RBP21.62■■□□□ 1.05
NEDD1-206ENST00000554226 NHSL1Q5SYE7 1610 aa21.62■■□□□ 1.05
NEDD1-206ENST00000554226 ATF3P18847 181 aa21.61■■□□□ 1.05
NEDD1-206ENST00000554226 BRINP3Q76B58 766 aa21.6■■□□□ 1.05
NEDD1-206ENST00000554226 SETD5Q9C0A6 1442 aa21.6■■□□□ 1.05
NEDD1-206ENST00000554226 ASXL1Q8IXJ9 1541 aa21.59■■□□□ 1.05
NEDD1-206ENST00000554226 NRXN3Q9Y4C0 1643 aa21.58■■□□□ 1.05
NEDD1-206ENST00000554226 PTPRUQ92729 1446 aa21.58■■□□□ 1.05
NEDD1-206ENST00000554226 AFF2P51816 1311 aa21.57■■□□□ 1.04
NEDD1-206ENST00000554226 SETBP1Q9Y6X0 1596 aa21.57■■□□□ 1.04
NEDD1-206ENST00000554226 NUTM2BA6NNL0 878 aaPredicted RBP21.56■■□□□ 1.04
NEDD1-206ENST00000554226 NUTM2EB1AL46 878 aaPredicted RBP21.56■■□□□ 1.04
NEDD1-206ENST00000554226 NUTM2AQ8IVF1 878 aaPredicted RBP21.56■■□□□ 1.04
NEDD1-206ENST00000554226 RGS12O14924 1447 aa21.55■■□□□ 1.04
NEDD1-206ENST00000554226 ROCK1Q13464 1354 aa21.55■■□□□ 1.04
NEDD1-206ENST00000554226 MST1RQ04912 1400 aa21.55■■□□□ 1.04
NEDD1-206ENST00000554226 AMOTL2Q9Y2J4 779 aa21.54■■□□□ 1.04
NEDD1-206ENST00000554226 NUTM2DQ5VT03 806 aaPredicted RBP21.52■■□□□ 1.04
NEDD1-206ENST00000554226 CHGAP10645 457 aaKnown RBP21.51■■□□□ 1.03
NEDD1-206ENST00000554226 FAM50AQ14320 339 aaKnown RBP21.51■■□□□ 1.03
NEDD1-206ENST00000554226 LAMC1P11047 1609 aa21.51■■□□□ 1.03
NEDD1-206ENST00000554226 SRCAPQ6ZRS2 3230 aa21.5■■□□□ 1.03
NEDD1-206ENST00000554226 RBM6P78332 1123 aaKnown RBP21.48■■□□□ 1.03
NEDD1-206ENST00000554226 SPHKAPQ2M3C7 1700 aa21.48■■□□□ 1.03
NEDD1-206ENST00000554226 ADGRL3Q9HAR2 1447 aa21.47■■□□□ 1.03
NEDD1-206ENST00000554226 LRRC59Q96AG4 307 aaKnown RBP21.47■■□□□ 1.03
NEDD1-206ENST00000554226 PNPLA6Q8IY17 1366 aa21.47■■□□□ 1.03
NEDD1-206ENST00000554226 NALCNQ8IZF0 1738 aa21.46■■□□□ 1.03
NEDD1-206ENST00000554226 C8orf37Q96NL8 207 aa21.46■■□□□ 1.03
NEDD1-206ENST00000554226 QTRT2Q9H974 415 aaKnown RBP21.46■■□□□ 1.03
NEDD1-206ENST00000554226 NUP155O75694 1391 aa21.43■■□□□ 1.02
NEDD1-206ENST00000554226 METP08581 1390 aa21.42■■□□□ 1.02
NEDD1-206ENST00000554226 NEXMIFQ5QGS0 1516 aa21.39■■□□□ 1.02
NEDD1-206ENST00000554226 ATAD2Q6PL18 1390 aa21.39■■□□□ 1.02
NEDD1-206ENST00000554226 DDX17Q92841 729 aaKnown RBP21.39■■□□□ 1.01
NEDD1-206ENST00000554226 PRAG1Q86YV5 1406 aa21.38■■□□□ 1.01
NEDD1-206ENST00000554226 NGLY1Q96IV0 654 aa21.37■■□□□ 1.01
NEDD1-206ENST00000554226 PTCH1Q13635 1447 aa21.37■■□□□ 1.01
NEDD1-206ENST00000554226 C1orf167Q5SNV9 1468 aa21.36■■□□□ 1.01
NEDD1-206ENST00000554226 COL22A1Q8NFW1 1626 aaPredicted RBP21.36■■□□□ 1.01
NEDD1-206ENST00000554226 CLTCL1P53675 1640 aa21.35■■□□□ 1.01
NEDD1-206ENST00000554226 SOS2Q07890 1332 aaPredicted RBP21.33■■□□□ 1.01
NEDD1-206ENST00000554226 ADAMTS2O95450 1211 aa21.33■■□□□ 1.01
NEDD1-206ENST00000554226 KIF1BO60333 1816 aa21.32■■□□□ 1
NEDD1-206ENST00000554226 EP400Q96L91 3159 aa21.32■■□□□ 1
NEDD1-206ENST00000554226 FOXD1Q16676 465 aa21.3■■□□□ 1
NEDD1-206ENST00000554226 ZRANB1Q9UGI0 708 aa21.3■■□□□ 1
NEDD1-206ENST00000554226 USP21Q9UK80 565 aa21.3■■□□□ 1
NEDD1-206ENST00000554226 TRPC5Q9UL62 973 aaPredicted RBP21.3■■□□□ 1
NEDD1-206ENST00000554226 ZNF326Q5BKZ1 582 aaKnown RBP21.29■■□□□ 1
NEDD1-206ENST00000554226 FNBP4Q8N3X1 1017 aaPredicted RBP21.29■■□□□ 1
NEDD1-206ENST00000554226 ATRNO75882 1429 aa21.29■■□□□ 1
NEDD1-206ENST00000554226 MARF1Q9Y4F3 1742 aaKnown RBP21.26■□□□□ 0.99
NEDD1-206ENST00000554226 ROBO2Q9HCK4 1378 aa21.25■□□□□ 0.99
NEDD1-206ENST00000554226 MYOM2P54296 1465 aa21.25■□□□□ 0.99
NEDD1-206ENST00000554226 CDC42BPGQ6DT37 1551 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms