RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 MPHOSPH9Q99550 1183 aa21.31■■□□□ 1
CCDC88C-207ENST00000554051 DIP2AQ14689 1571 aa21.31■■□□□ 1
CCDC88C-207ENST00000554051 CCDC144AA2RUR9 1427 aa21.3■■□□□ 1
CCDC88C-207ENST00000554051 PLEKHG1Q9ULL1 1385 aa21.3■■□□□ 1
CCDC88C-207ENST00000554051 PPP1R15AO75807 674 aaPredicted RBP21.29■■□□□ 1
CCDC88C-207ENST00000554051 CHGAP10645 457 aaKnown RBP21.29■■□□□ 1
CCDC88C-207ENST00000554051 LTKP29376 864 aa21.29■■□□□ 1
CCDC88C-207ENST00000554051 CERKQ8TCT0 537 aa21.28■■□□□ 1
CCDC88C-207ENST00000554051 ZNF335Q9H4Z2 1342 aaPredicted RBP21.27■□□□□ 0.99
CCDC88C-207ENST00000554051 NEXMIFQ5QGS0 1516 aa21.24■□□□□ 0.99
CCDC88C-207ENST00000554051 NWD1Q149M9 1564 aa21.23■□□□□ 0.99
CCDC88C-207ENST00000554051 SETBP1Q9Y6X0 1596 aa21.23■□□□□ 0.99
CCDC88C-207ENST00000554051 FBXO41Q8TF61 875 aa21.21■□□□□ 0.99
CCDC88C-207ENST00000554051 RPGRIP1LQ68CZ1 1315 aa21.21■□□□□ 0.99
CCDC88C-207ENST00000554051 NKTRP30414 1462 aaKnown RBP21.2■□□□□ 0.98
CCDC88C-207ENST00000554051 ZNF326Q5BKZ1 582 aaKnown RBP21.2■□□□□ 0.98
CCDC88C-207ENST00000554051 PIK3R4Q99570 1358 aa21.19■□□□□ 0.98
CCDC88C-207ENST00000554051 PPLO60437 1756 aa21.18■□□□□ 0.98
CCDC88C-207ENST00000554051 BCANQ96GW7 911 aa21.17■□□□□ 0.98
CCDC88C-207ENST00000554051 SPATA31E1Q6ZUB1 1445 aa21.16■□□□□ 0.98
CCDC88C-207ENST00000554051 FOXD1Q16676 465 aa21.16■□□□□ 0.98
CCDC88C-207ENST00000554051 STRCP1A6NGW2 1772 aa21.15■□□□□ 0.98
CCDC88C-207ENST00000554051 ADAMTS13Q76LX8 1427 aa21.15■□□□□ 0.98
CCDC88C-207ENST00000554051 NRXN3Q9Y4C0 1643 aa21.15■□□□□ 0.98
CCDC88C-207ENST00000554051 TBX22Q9Y458 520 aa21.14■□□□□ 0.97
CCDC88C-207ENST00000554051 IFT172Q9UG01 1749 aa21.14■□□□□ 0.97
CCDC88C-207ENST00000554051 ANKRD30BQ9BXX2 1392 aa21.13■□□□□ 0.97
CCDC88C-207ENST00000554051 VGFO15240 615 aaPredicted RBP21.13■□□□□ 0.97
CCDC88C-207ENST00000554051 TRIM26Q12899 539 aaPredicted RBP21.13■□□□□ 0.97
CCDC88C-207ENST00000554051 LRRC7Q96NW7 1537 aa21.13■□□□□ 0.97
CCDC88C-207ENST00000554051 KCNA6P17658 529 aa21.12■□□□□ 0.97
CCDC88C-207ENST00000554051 CHD2O14647 1828 aaKnown RBP21.12■□□□□ 0.97
CCDC88C-207ENST00000554051 SLC26A8Q96RN1 970 aa21.11■□□□□ 0.97
CCDC88C-207ENST00000554051 MYOM2P54296 1465 aa21.08■□□□□ 0.97
CCDC88C-207ENST00000554051 XRN1Q8IZH2 1706 aaKnown RBP21.07■□□□□ 0.96
CCDC88C-207ENST00000554051 NUTM2DQ5VT03 806 aaPredicted RBP21.06■□□□□ 0.96
CCDC88C-207ENST00000554051 LAMC1P11047 1609 aa21.06■□□□□ 0.96
CCDC88C-207ENST00000554051 NCOA3Q9Y6Q9 1424 aa21.05■□□□□ 0.96
CCDC88C-207ENST00000554051 ILDR1Q86SU0 546 aaPredicted RBP21.05■□□□□ 0.96
CCDC88C-207ENST00000554051 SETD1AO15047 1707 aaKnown RBP21.04■□□□□ 0.96
CCDC88C-207ENST00000554051 PRAG1Q86YV5 1406 aa21.03■□□□□ 0.96
CCDC88C-207ENST00000554051 XIRP1Q702N8 1843 aaKnown RBP21.02■□□□□ 0.96
CCDC88C-207ENST00000554051 ALKQ9UM73 1620 aa21.02■□□□□ 0.96
CCDC88C-207ENST00000554051 TMEM94Q12767 1356 aa21.01■□□□□ 0.95
CCDC88C-207ENST00000554051 TOM1O60784 492 aa21.01■□□□□ 0.95
CCDC88C-207ENST00000554051 STAC3Q96MF2 364 aa21.01■□□□□ 0.95
CCDC88C-207ENST00000554051 PIK3C2GO75747 1445 aa21.01■□□□□ 0.95
CCDC88C-207ENST00000554051 NRXN1Q9ULB1 1477 aa21.01■□□□□ 0.95
CCDC88C-207ENST00000554051 UBAP1LF5GYI3 381 aa20.99■□□□□ 0.95
CCDC88C-207ENST00000554051 PTCH1Q13635 1447 aa20.98■□□□□ 0.95
CCDC88C-207ENST00000554051 RGL3Q3MIN7 710 aa20.98■□□□□ 0.95
CCDC88C-207ENST00000554051 PROSER2Q86WR7 435 aaPredicted RBP20.98■□□□□ 0.95
CCDC88C-207ENST00000554051 MSH6P52701 1360 aa20.97■□□□□ 0.95
CCDC88C-207ENST00000554051 METP08581 1390 aa20.96■□□□□ 0.95
CCDC88C-207ENST00000554051 PTPRUQ92729 1446 aa20.95■□□□□ 0.95
CCDC88C-207ENST00000554051 SENP3Q9H4L4 574 aaPredicted RBP20.94■□□□□ 0.94
CCDC88C-207ENST00000554051 AMOTL2Q9Y2J4 779 aa20.94■□□□□ 0.94
CCDC88C-207ENST00000554051 DCCP43146 1447 aa20.94■□□□□ 0.94
CCDC88C-207ENST00000554051 KNDC1Q76NI1 1749 aa20.93■□□□□ 0.94
CCDC88C-207ENST00000554051 ADGRF5Q8IZF2 1346 aa20.93■□□□□ 0.94
CCDC88C-207ENST00000554051 DHX57Q6P158 1386 aaKnown RBP20.91■□□□□ 0.94
CCDC88C-207ENST00000554051 TECPR2O15040 1411 aa20.9■□□□□ 0.94
CCDC88C-207ENST00000554051 ASXL1Q8IXJ9 1541 aa20.88■□□□□ 0.93
CCDC88C-207ENST00000554051 ADGRL3Q9HAR2 1447 aa20.87■□□□□ 0.93
CCDC88C-207ENST00000554051 LRPPRCP42704 1394 aaKnown RBP20.87■□□□□ 0.93
CCDC88C-207ENST00000554051 C14orf37Q86TY3 774 aa20.87■□□□□ 0.93
CCDC88C-207ENST00000554051 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.86■□□□□ 0.93
CCDC88C-207ENST00000554051 KIAA1210Q9ULL0 1709 aa20.85■□□□□ 0.93
CCDC88C-207ENST00000554051 CADPS2Q86UW7 1296 aa20.85■□□□□ 0.93
CCDC88C-207ENST00000554051 C19orf44Q9H6X5 657 aa20.85■□□□□ 0.93
CCDC88C-207ENST00000554051 NALCNQ8IZF0 1738 aa20.84■□□□□ 0.93
CCDC88C-207ENST00000554051 SCAF1Q9H7N4 1312 aaKnown RBP20.84■□□□□ 0.93
CCDC88C-207ENST00000554051 DCAF11Q8TEB1 546 aa20.84■□□□□ 0.93
CCDC88C-207ENST00000554051 C14orf93Q9H972 538 aaKnown RBP20.84■□□□□ 0.93
CCDC88C-207ENST00000554051 ABCC11Q96J66 1382 aa20.84■□□□□ 0.93
CCDC88C-207ENST00000554051 FAM135BQ49AJ0 1406 aa20.83■□□□□ 0.93
CCDC88C-207ENST00000554051 YTHDC2Q9H6S0 1430 aaKnown RBP20.83■□□□□ 0.93
CCDC88C-207ENST00000554051 PIP4K2BP78356 416 aa20.82■□□□□ 0.92
CCDC88C-207ENST00000554051 DLC1Q96QB1 1528 aa20.82■□□□□ 0.92
CCDC88C-207ENST00000554051 CDC42BPGQ6DT37 1551 aa20.81■□□□□ 0.92
CCDC88C-207ENST00000554051 ATF3P18847 181 aa20.81■□□□□ 0.92
CCDC88C-207ENST00000554051 ROBO2Q9HCK4 1378 aa20.81■□□□□ 0.92
CCDC88C-207ENST00000554051 ADGRB1O14514 1584 aa20.8■□□□□ 0.92
CCDC88C-207ENST00000554051 ROBO1Q9Y6N7 1651 aa20.8■□□□□ 0.92
CCDC88C-207ENST00000554051 RBM33Q96EV2 1170 aaKnown RBP20.78■□□□□ 0.92
CCDC88C-207ENST00000554051 SIRT1Q96EB6 747 aa20.77■□□□□ 0.92
CCDC88C-207ENST00000554051 CFAP70Q5T0N1 1121 aa20.76■□□□□ 0.91
CCDC88C-207ENST00000554051 SLAIN2Q9P270 581 aa20.75■□□□□ 0.91
CCDC88C-207ENST00000554051 KDM2AQ9Y2K7 1162 aa20.75■□□□□ 0.91
CCDC88C-207ENST00000554051 MST1RQ04912 1400 aa20.74■□□□□ 0.91
CCDC88C-207ENST00000554051 TMEM132EQ6IEE7 984 aa20.72■□□□□ 0.91
CCDC88C-207ENST00000554051 ADGRB2O60241 1585 aa20.72■□□□□ 0.91
CCDC88C-207ENST00000554051 AHDC1Q5TGY3 1603 aaPredicted RBP20.71■□□□□ 0.91
CCDC88C-207ENST00000554051 CLSPNQ9HAW4 1339 aa20.71■□□□□ 0.91
CCDC88C-207ENST00000554051 TONSLQ96HA7 1378 aa20.71■□□□□ 0.91
CCDC88C-207ENST00000554051 STK26Q9P289 416 aa20.7■□□□□ 0.9
CCDC88C-207ENST00000554051 HSPA1LP34931 641 aa20.69■□□□□ 0.9
CCDC88C-207ENST00000554051 ARHGEF28Q8N1W1 1705 aaKnown RBP20.69■□□□□ 0.9
CCDC88C-207ENST00000554051 PHLPP1O60346 1717 aa20.68■□□□□ 0.9
CCDC88C-207ENST00000554051 L3MBTL2Q969R5 705 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms