RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 ZFYVE9O95405 1425 aa14.23□□□□□ -0.13
SYNE2-209ENST00000553308 MSH6P52701 1360 aa14.22□□□□□ -0.13
SYNE2-209ENST00000553308 MYO5BQ9ULV0 1848 aa14.22□□□□□ -0.13
SYNE2-209ENST00000553308 PHLPP1O60346 1717 aa14.22□□□□□ -0.13
SYNE2-209ENST00000553308 BCANQ96GW7 911 aa14.22□□□□□ -0.13
SYNE2-209ENST00000553308 GCC2Q8IWJ2 1684 aa14.22□□□□□ -0.13
SYNE2-209ENST00000553308 RPRD2Q5VT52 1461 aaKnown RBP14.21□□□□□ -0.13
SYNE2-209ENST00000553308 SLC52A1Q9NWF4 448 aa14.21□□□□□ -0.13
SYNE2-209ENST00000553308 SETD1AO15047 1707 aaKnown RBP14.21□□□□□ -0.14
SYNE2-209ENST00000553308 PLEKHG1Q9ULL1 1385 aa14.2□□□□□ -0.14
SYNE2-209ENST00000553308 CHD2O14647 1828 aaKnown RBP14.2□□□□□ -0.14
SYNE2-209ENST00000553308 TMEM131LA2VDJ0 1609 aa14.19□□□□□ -0.14
SYNE2-209ENST00000553308 ANKRD50Q9ULJ7 1429 aa14.19□□□□□ -0.14
SYNE2-209ENST00000553308 RIMS2Q9UQ26 1411 aa14.19□□□□□ -0.14
SYNE2-209ENST00000553308 SLAIN2Q9P270 581 aa14.18□□□□□ -0.14
SYNE2-209ENST00000553308 COL16A1Q07092 1604 aaPredicted RBP14.18□□□□□ -0.14
SYNE2-209ENST00000553308 PPP1R15AO75807 674 aaPredicted RBP14.17□□□□□ -0.14
SYNE2-209ENST00000553308 JCADQ9P266 1359 aa14.17□□□□□ -0.14
SYNE2-209ENST00000553308 FAM50AQ14320 339 aaKnown RBP14.16□□□□□ -0.14
SYNE2-209ENST00000553308 UNC13BO14795 1591 aa14.15□□□□□ -0.14
SYNE2-209ENST00000553308 LRP6O75581 1613 aa14.15□□□□□ -0.14
SYNE2-209ENST00000553308 ADAMTS13Q76LX8 1427 aa14.14□□□□□ -0.15
SYNE2-209ENST00000553308 E9PCH4 1651 aa14.14□□□□□ -0.15
SYNE2-209ENST00000553308 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.12□□□□□ -0.15
SYNE2-209ENST00000553308 CHGAP10645 457 aaKnown RBP14.12□□□□□ -0.15
SYNE2-209ENST00000553308 NUTM2DQ5VT03 806 aaPredicted RBP14.12□□□□□ -0.15
SYNE2-209ENST00000553308 TBX22Q9Y458 520 aa14.12□□□□□ -0.15
SYNE2-209ENST00000553308 NCOA3Q9Y6Q9 1424 aa14.12□□□□□ -0.15
SYNE2-209ENST00000553308 DIP2AQ14689 1571 aa14.12□□□□□ -0.15
SYNE2-209ENST00000553308 HDGFP51858 240 aaKnown RBP14.11□□□□□ -0.15
SYNE2-209ENST00000553308 C14orf37Q86TY3 774 aa14.11□□□□□ -0.15
SYNE2-209ENST00000553308 AHDC1Q5TGY3 1603 aaPredicted RBP14.11□□□□□ -0.15
SYNE2-209ENST00000553308 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.1□□□□□ -0.15
SYNE2-209ENST00000553308 IQGAP3Q86VI3 1631 aa14.09□□□□□ -0.15
SYNE2-209ENST00000553308 SHPRHQ149N8 1683 aa14.09□□□□□ -0.15
SYNE2-209ENST00000553308 SPATA31A6Q5VVP1 1343 aa14.09□□□□□ -0.15
SYNE2-209ENST00000553308 CADPS2Q86UW7 1296 aa14.08□□□□□ -0.16
SYNE2-209ENST00000553308 TRPM2O94759 1503 aa14.08□□□□□ -0.16
SYNE2-209ENST00000553308 PIK3R4Q99570 1358 aa14.08□□□□□ -0.16
SYNE2-209ENST00000553308 PTPRUQ92729 1446 aa14.07□□□□□ -0.16
SYNE2-209ENST00000553308 MEX3CQ5U5Q3 659 aaKnown RBP14.07□□□□□ -0.16
SYNE2-209ENST00000553308 C19orf44Q9H6X5 657 aa14.07□□□□□ -0.16
SYNE2-209ENST00000553308 ATF3P18847 181 aa14.06□□□□□ -0.16
SYNE2-209ENST00000553308 TRIM52Q96A61 297 aa14.05□□□□□ -0.16
SYNE2-209ENST00000553308 NRXN3Q9Y4C0 1643 aa14.04□□□□□ -0.16
SYNE2-209ENST00000553308 XRN1Q8IZH2 1706 aaKnown RBP14.04□□□□□ -0.16
SYNE2-209ENST00000553308 ZNF772Q68DY9 489 aaPredicted RBP14.04□□□□□ -0.16
SYNE2-209ENST00000553308 BRINP3Q76B58 766 aa14.04□□□□□ -0.16
SYNE2-209ENST00000553308 AMOTL2Q9Y2J4 779 aa14.04□□□□□ -0.16
SYNE2-209ENST00000553308 ROCK1Q13464 1354 aa14.04□□□□□ -0.16
SYNE2-209ENST00000553308 ASXL1Q8IXJ9 1541 aa14.03□□□□□ -0.16
SYNE2-209ENST00000553308 SETBP1Q9Y6X0 1596 aa14.02□□□□□ -0.16
SYNE2-209ENST00000553308 DCCP43146 1447 aa14.02□□□□□ -0.16
SYNE2-209ENST00000553308 NUP155O75694 1391 aa14.02□□□□□ -0.17
SYNE2-209ENST00000553308 UPF1Q92900 1129 aaKnown RBP eCLIP14.02□□□□□ -0.17
SYNE2-209ENST00000553308 NUTM2BA6NNL0 878 aaPredicted RBP14.01□□□□□ -0.17
SYNE2-209ENST00000553308 NUTM2EB1AL46 878 aaPredicted RBP14.01□□□□□ -0.17
SYNE2-209ENST00000553308 NUTM2AQ8IVF1 878 aaPredicted RBP14.01□□□□□ -0.17
SYNE2-209ENST00000553308 NHSL1Q5SYE7 1610 aa14.01□□□□□ -0.17
SYNE2-209ENST00000553308 MST1RQ04912 1400 aa14□□□□□ -0.17
SYNE2-209ENST00000553308 SPHKAPQ2M3C7 1700 aa14□□□□□ -0.17
SYNE2-209ENST00000553308 SETD5Q9C0A6 1442 aa13.98□□□□□ -0.17
SYNE2-209ENST00000553308 METP08581 1390 aa13.98□□□□□ -0.17
SYNE2-209ENST00000553308 RXRBP28702 533 aa13.98□□□□□ -0.17
SYNE2-209ENST00000553308 ITGAEP38570 1179 aa13.98□□□□□ -0.17
SYNE2-209ENST00000553308 CDK12Q9NYV4 1490 aaPredicted RBP13.98□□□□□ -0.17
SYNE2-209ENST00000553308 AFF2P51816 1311 aa13.97□□□□□ -0.17
SYNE2-209ENST00000553308 NALCNQ8IZF0 1738 aa13.97□□□□□ -0.17
SYNE2-209ENST00000553308 DDX17Q92841 729 aaKnown RBP13.96□□□□□ -0.17
SYNE2-209ENST00000553308 ADGRL3Q9HAR2 1447 aa13.96□□□□□ -0.18
SYNE2-209ENST00000553308 CLTCL1P53675 1640 aa13.95□□□□□ -0.18
SYNE2-209ENST00000553308 ZNF326Q5BKZ1 582 aaKnown RBP13.95□□□□□ -0.18
SYNE2-209ENST00000553308 PNPLA6Q8IY17 1366 aa13.95□□□□□ -0.18
SYNE2-209ENST00000553308 NEXMIFQ5QGS0 1516 aa13.95□□□□□ -0.18
SYNE2-209ENST00000553308 RGS12O14924 1447 aa13.93□□□□□ -0.18
SYNE2-209ENST00000553308 LRRC59Q96AG4 307 aaKnown RBP13.93□□□□□ -0.18
SYNE2-209ENST00000553308 C8orf37Q96NL8 207 aa13.93□□□□□ -0.18
SYNE2-209ENST00000553308 C1orf167Q5SNV9 1468 aa13.9□□□□□ -0.18
SYNE2-209ENST00000553308 PPARGC1BQ86YN6 1023 aaKnown RBP13.89□□□□□ -0.19
SYNE2-209ENST00000553308 QTRT2Q9H974 415 aaKnown RBP13.89□□□□□ -0.19
SYNE2-209ENST00000553308 LAMC1P11047 1609 aa13.89□□□□□ -0.19
SYNE2-209ENST00000553308 KIF1BO60333 1816 aa13.88□□□□□ -0.19
SYNE2-209ENST00000553308 RBM6P78332 1123 aaKnown RBP13.88□□□□□ -0.19
SYNE2-209ENST00000553308 PTCH1Q13635 1447 aa13.88□□□□□ -0.19
SYNE2-209ENST00000553308 ADAMTS2O95450 1211 aa13.87□□□□□ -0.19
SYNE2-209ENST00000553308 ROBO2Q9HCK4 1378 aa13.86□□□□□ -0.19
SYNE2-209ENST00000553308 NGLY1Q96IV0 654 aa13.85□□□□□ -0.19
SYNE2-209ENST00000553308 ORAI2Q96SN7 254 aa13.85□□□□□ -0.19
SYNE2-209ENST00000553308 SOS2Q07890 1332 aaPredicted RBP13.85□□□□□ -0.19
SYNE2-209ENST00000553308 PRAG1Q86YV5 1406 aa13.83□□□□□ -0.2
SYNE2-209ENST00000553308 NAIPQ13075 1403 aa13.82□□□□□ -0.2
SYNE2-209ENST00000553308 COL22A1Q8NFW1 1626 aaPredicted RBP13.82□□□□□ -0.2
SYNE2-209ENST00000553308 VGFO15240 615 aaPredicted RBP13.81□□□□□ -0.2
SYNE2-209ENST00000553308 USP21Q9UK80 565 aa13.81□□□□□ -0.2
SYNE2-209ENST00000553308 ATAD2Q6PL18 1390 aa13.81□□□□□ -0.2
SYNE2-209ENST00000553308 PPLO60437 1756 aa13.81□□□□□ -0.2
SYNE2-209ENST00000553308 HFM1A2PYH4 1435 aa13.8□□□□□ -0.2
SYNE2-209ENST00000553308 ATRNO75882 1429 aa13.8□□□□□ -0.2
SYNE2-209ENST00000553308 MYOM2P54296 1465 aa13.8□□□□□ -0.2
SYNE2-209ENST00000553308 CDC42BPGQ6DT37 1551 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms