RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 L3MBTL2Q969R5 705 aa13.85□□□□□ -0.19
LIMA1-211ENST00000552338 TONSLQ96HA7 1378 aa13.84□□□□□ -0.19
LIMA1-211ENST00000552338 CEP170BQ9Y4F5 1589 aaPredicted RBP13.84□□□□□ -0.19
LIMA1-211ENST00000552338 MYOM2P54296 1465 aa13.84□□□□□ -0.19
LIMA1-211ENST00000552338 NRXN1Q9ULB1 1477 aa13.84□□□□□ -0.19
LIMA1-211ENST00000552338 SLIT1O75093 1534 aa13.84□□□□□ -0.19
LIMA1-211ENST00000552338 NEXMIFQ5QGS0 1516 aa13.84□□□□□ -0.19
LIMA1-211ENST00000552338 ARHGAP23Q9P227 1491 aa13.83□□□□□ -0.2
LIMA1-211ENST00000552338 KIAA1210Q9ULL0 1709 aa13.81□□□□□ -0.2
LIMA1-211ENST00000552338 THEMISQ8N1K5 641 aaPredicted RBP13.79□□□□□ -0.2
LIMA1-211ENST00000552338 TMEM2Q9UHN6 1383 aa13.79□□□□□ -0.2
LIMA1-211ENST00000552338 VGFO15240 615 aaPredicted RBP13.78□□□□□ -0.2
LIMA1-211ENST00000552338 HDGFP51858 240 aaKnown RBP13.78□□□□□ -0.2
LIMA1-211ENST00000552338 PRAG1Q86YV5 1406 aa13.78□□□□□ -0.2
LIMA1-211ENST00000552338 RGL3Q3MIN7 710 aa13.77□□□□□ -0.21
LIMA1-211ENST00000552338 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.77□□□□□ -0.21
LIMA1-211ENST00000552338 DCAF11Q8TEB1 546 aa13.77□□□□□ -0.21
LIMA1-211ENST00000552338 RIMS2Q9UQ26 1411 aa13.76□□□□□ -0.21
LIMA1-211ENST00000552338 TRPM1Q7Z4N2 1603 aa13.75□□□□□ -0.21
LIMA1-211ENST00000552338 PIK3C2GO75747 1445 aa13.75□□□□□ -0.21
LIMA1-211ENST00000552338 STAG3Q9UJ98 1225 aa13.75□□□□□ -0.21
LIMA1-211ENST00000552338 LAMC1P11047 1609 aa13.75□□□□□ -0.21
LIMA1-211ENST00000552338 NBPF8Q3BBV2 869 aa13.74□□□□□ -0.21
LIMA1-211ENST00000552338 SETBP1Q9Y6X0 1596 aa13.74□□□□□ -0.21
LIMA1-211ENST00000552338 MED14O60244 1454 aa13.74□□□□□ -0.21
LIMA1-211ENST00000552338 GPRASP1Q5JY77 1395 aa13.73□□□□□ -0.21
LIMA1-211ENST00000552338 CHGAP10645 457 aaKnown RBP13.73□□□□□ -0.21
LIMA1-211ENST00000552338 ZNF326Q5BKZ1 582 aaKnown RBP13.73□□□□□ -0.21
LIMA1-211ENST00000552338 RALGAPBQ86X10 1494 aa13.73□□□□□ -0.21
LIMA1-211ENST00000552338 LMTK3Q96Q04 1460 aa13.73□□□□□ -0.21
LIMA1-211ENST00000552338 SETD1AO15047 1707 aaKnown RBP13.73□□□□□ -0.21
LIMA1-211ENST00000552338 NRXN3Q9Y4C0 1643 aa13.72□□□□□ -0.21
LIMA1-211ENST00000552338 ADGRF5Q8IZF2 1346 aa13.72□□□□□ -0.21
LIMA1-211ENST00000552338 C14orf93Q9H972 538 aaKnown RBP13.72□□□□□ -0.21
LIMA1-211ENST00000552338 PLEKHG1Q9ULL1 1385 aa13.71□□□□□ -0.21
LIMA1-211ENST00000552338 POLR1AO95602 1720 aaPredicted RBP13.71□□□□□ -0.21
LIMA1-211ENST00000552338 SCAF11Q99590 1463 aaKnown RBP13.7□□□□□ -0.22
LIMA1-211ENST00000552338 LTKP29376 864 aa13.7□□□□□ -0.22
LIMA1-211ENST00000552338 KDM2AQ9Y2K7 1162 aa13.69□□□□□ -0.22
LIMA1-211ENST00000552338 EID1Q9Y6B2 187 aa13.69□□□□□ -0.22
LIMA1-211ENST00000552338 DIP2AQ14689 1571 aa13.69□□□□□ -0.22
LIMA1-211ENST00000552338 ALKQ9UM73 1620 aa13.68□□□□□ -0.22
LIMA1-211ENST00000552338 ADGRB1O14514 1584 aa13.68□□□□□ -0.22
LIMA1-211ENST00000552338 TXNDC2Q86VQ3 553 aa13.68□□□□□ -0.22
LIMA1-211ENST00000552338 ANKLE2Q86XL3 938 aa13.68□□□□□ -0.22
LIMA1-211ENST00000552338 ADAMTS13Q76LX8 1427 aa13.67□□□□□ -0.22
LIMA1-211ENST00000552338 IQGAP1P46940 1657 aa13.66□□□□□ -0.22
LIMA1-211ENST00000552338 STRCQ7RTU9 1775 aa13.66□□□□□ -0.22
LIMA1-211ENST00000552338 TBX22Q9Y458 520 aa13.66□□□□□ -0.22
LIMA1-211ENST00000552338 PIK3R4Q99570 1358 aa13.64□□□□□ -0.23
LIMA1-211ENST00000552338 ASXL1Q8IXJ9 1541 aa13.64□□□□□ -0.23
LIMA1-211ENST00000552338 CFAP70Q5T0N1 1121 aa13.63□□□□□ -0.23
LIMA1-211ENST00000552338 KNDC1Q76NI1 1749 aa13.62□□□□□ -0.23
LIMA1-211ENST00000552338 NBPF1Q3BBV0 1214 aa13.62□□□□□ -0.23
LIMA1-211ENST00000552338 SIRT1Q96EB6 747 aa13.62□□□□□ -0.23
LIMA1-211ENST00000552338 CHD2O14647 1828 aaKnown RBP13.62□□□□□ -0.23
LIMA1-211ENST00000552338 ROCK2O75116 1388 aaKnown RBP13.61□□□□□ -0.23
LIMA1-211ENST00000552338 TECPR2O15040 1411 aa13.61□□□□□ -0.23
LIMA1-211ENST00000552338 NPHP4O75161 1426 aaPredicted RBP13.61□□□□□ -0.23
LIMA1-211ENST00000552338 ABCC11Q96J66 1382 aa13.6□□□□□ -0.23
LIMA1-211ENST00000552338 DLC1Q96QB1 1528 aa13.6□□□□□ -0.23
LIMA1-211ENST00000552338 NUTM2DQ5VT03 806 aaPredicted RBP13.6□□□□□ -0.23
LIMA1-211ENST00000552338 LRPPRCP42704 1394 aaKnown RBP13.58□□□□□ -0.23
LIMA1-211ENST00000552338 CARD11Q9BXL7 1154 aa13.58□□□□□ -0.24
LIMA1-211ENST00000552338 ARHGEF28Q8N1W1 1705 aaKnown RBP13.58□□□□□ -0.24
LIMA1-211ENST00000552338 METP08581 1390 aa13.58□□□□□ -0.24
LIMA1-211ENST00000552338 YTHDC2Q9H6S0 1430 aaKnown RBP13.57□□□□□ -0.24
LIMA1-211ENST00000552338 XRN1Q8IZH2 1706 aaKnown RBP13.57□□□□□ -0.24
LIMA1-211ENST00000552338 NCKAP5LQ9HCH0 1330 aa13.57□□□□□ -0.24
LIMA1-211ENST00000552338 SBNO2Q9Y2G9 1366 aa13.57□□□□□ -0.24
LIMA1-211ENST00000552338 CPS1P31327 1500 aa13.56□□□□□ -0.24
LIMA1-211ENST00000552338 SLC24A1O60721 1099 aa13.56□□□□□ -0.24
LIMA1-211ENST00000552338 EIF4G2P78344 907 aaKnown RBP eCLIP13.56□□□□□ -0.24
LIMA1-211ENST00000552338 NWD1Q149M9 1564 aa13.56□□□□□ -0.24
LIMA1-211ENST00000552338 FAM135BQ49AJ0 1406 aa13.56□□□□□ -0.24
LIMA1-211ENST00000552338 HSPA2P54652 639 aa13.55□□□□□ -0.24
LIMA1-211ENST00000552338 USP47Q96K76 1375 aa13.55□□□□□ -0.24
LIMA1-211ENST00000552338 PTPRUQ92729 1446 aa13.55□□□□□ -0.24
LIMA1-211ENST00000552338 DMRT2Q9Y5R5 561 aa13.54□□□□□ -0.24
LIMA1-211ENST00000552338 PTCH1Q13635 1447 aa13.54□□□□□ -0.24
LIMA1-211ENST00000552338 TMEM132EQ6IEE7 984 aa13.53□□□□□ -0.24
LIMA1-211ENST00000552338 EIF3AQ14152 1382 aaKnown RBP13.53□□□□□ -0.24
LIMA1-211ENST00000552338 SLC26A8Q96RN1 970 aa13.52□□□□□ -0.25
LIMA1-211ENST00000552338 HSPA5P11021 654 aaKnown RBP13.51□□□□□ -0.25
LIMA1-211ENST00000552338 KCNA6P17658 529 aa13.51□□□□□ -0.25
LIMA1-211ENST00000552338 TESK2Q96S53 571 aa13.51□□□□□ -0.25
LIMA1-211ENST00000552338 NKTRP30414 1462 aaKnown RBP13.49□□□□□ -0.25
LIMA1-211ENST00000552338 NCOA3Q9Y6Q9 1424 aa13.49□□□□□ -0.25
LIMA1-211ENST00000552338 ST20-MTHFSA0A0A6YYL1 179 aa13.49□□□□□ -0.25
LIMA1-211ENST00000552338 PUS7Q96PZ0 661 aaKnown RBP13.49□□□□□ -0.25
LIMA1-211ENST00000552338 AMOTL2Q9Y2J4 779 aa13.49□□□□□ -0.25
LIMA1-211ENST00000552338 STRCP1A6NGW2 1772 aa13.49□□□□□ -0.25
LIMA1-211ENST00000552338 QRICH2Q9H0J4 1663 aa13.49□□□□□ -0.25
LIMA1-211ENST00000552338 BCANQ96GW7 911 aa13.48□□□□□ -0.25
LIMA1-211ENST00000552338 TRAK1Q9UPV9 953 aa13.48□□□□□ -0.25
LIMA1-211ENST00000552338 CENPJQ9HC77 1338 aaPredicted RBP13.47□□□□□ -0.25
LIMA1-211ENST00000552338 ADGRB2O60241 1585 aa13.47□□□□□ -0.25
LIMA1-211ENST00000552338 ROBO2Q9HCK4 1378 aa13.46□□□□□ -0.25
LIMA1-211ENST00000552338 ZNF316A6NFI3 1004 aaPredicted RBP13.46□□□□□ -0.25
LIMA1-211ENST00000552338 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms