RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 CD46P15529 392 aa11.3□□□□□ -0.6
LIMA1-210ENST00000552045 COL9A1P20849 921 aa11.3□□□□□ -0.6
LIMA1-210ENST00000552045 HRCP23327 699 aa11.3□□□□□ -0.6
LIMA1-210ENST00000552045 TMEM259Q4ZIN3 620 aa11.3□□□□□ -0.6
LIMA1-210ENST00000552045 RIC3Q7Z5B4 369 aa11.3□□□□□ -0.6
LIMA1-210ENST00000552045 TUSC1Q2TAM9 212 aa11.28□□□□□ -0.6
LIMA1-210ENST00000552045 PPP4R3BQ5MIZ7 849 aa11.27□□□□□ -0.61
LIMA1-210ENST00000552045 SULF1Q8IWU6 871 aa11.27□□□□□ -0.61
LIMA1-210ENST00000552045 BCL2L12Q9HB09 334 aa11.27□□□□□ -0.61
LIMA1-210ENST00000552045 TSKSQ9UJT2 592 aa11.27□□□□□ -0.61
LIMA1-210ENST00000552045 SPTLC1O15269 473 aa11.26□□□□□ -0.61
LIMA1-210ENST00000552045 FAM163AQ96GL9 167 aaPredicted RBP11.26□□□□□ -0.61
LIMA1-210ENST00000552045 SERPINA10Q9UK55 444 aa11.26□□□□□ -0.61
LIMA1-210ENST00000552045 PDIA4P13667 645 aaKnown RBP11.25□□□□□ -0.61
LIMA1-210ENST00000552045 NUDT18Q6ZVK8 323 aa11.25□□□□□ -0.61
LIMA1-210ENST00000552045 NUTM1Q86Y26 1132 aa11.25□□□□□ -0.61
LIMA1-210ENST00000552045 PPP1R3GB7ZBB8 358 aa11.24□□□□□ -0.61
LIMA1-210ENST00000552045 DNAJB2P25686 324 aa11.24□□□□□ -0.61
LIMA1-210ENST00000552045 RSBN1LQ6PCB5 846 aaPredicted RBP11.24□□□□□ -0.61
LIMA1-210ENST00000552045 CCDC97Q96F63 343 aaPredicted RBP11.24□□□□□ -0.61
LIMA1-210ENST00000552045 DDX11L8A8MPP1 907 aa11.23□□□□□ -0.61
LIMA1-210ENST00000552045 C3orf80F5H4A9 247 aa11.23□□□□□ -0.61
LIMA1-210ENST00000552045 PTPREP23469 700 aa11.23□□□□□ -0.61
LIMA1-210ENST00000552045 MOXD2PA6NHM9 499 aa11.22□□□□□ -0.61
LIMA1-210ENST00000552045 NBPF26B4DH59 902 aa11.22□□□□□ -0.61
LIMA1-210ENST00000552045 EMP3P54852 163 aa11.22□□□□□ -0.61
LIMA1-210ENST00000552045 MTMR14Q8NCE2 650 aa11.22□□□□□ -0.61
LIMA1-210ENST00000552045 TATDN2Q93075 761 aa11.22□□□□□ -0.61
LIMA1-210ENST00000552045 TMEM134Q9H6X4 195 aa11.22□□□□□ -0.61
LIMA1-210ENST00000552045 PLSCR2Q9NRY7 297 aa11.22□□□□□ -0.61
LIMA1-210ENST00000552045 ZNF330Q9Y3S2 320 aaPredicted RBP11.22□□□□□ -0.61
LIMA1-210ENST00000552045 GJA5P36382 358 aa11.21□□□□□ -0.61
LIMA1-210ENST00000552045 LCE2DQ5TA82 110 aaPredicted RBP11.21□□□□□ -0.61
LIMA1-210ENST00000552045 PNMA3Q9UL41 463 aa11.21□□□□□ -0.61
LIMA1-210ENST00000552045 ERBB3P21860 1342 aa11.2□□□□□ -0.62
LIMA1-210ENST00000552045 TRIM6-TRIM34B2RNG4 842 aa11.2□□□□□ -0.62
LIMA1-210ENST00000552045 MARVELD3Q96A59 401 aa11.2□□□□□ -0.62
LIMA1-210ENST00000552045 SOCS7O14512 581 aa11.19□□□□□ -0.62
LIMA1-210ENST00000552045 LILRB3O75022 631 aa11.19□□□□□ -0.62
LIMA1-210ENST00000552045 CSPP1Q1MSJ5 1256 aa11.19□□□□□ -0.62
LIMA1-210ENST00000552045 PACS2Q86VP3 889 aa11.19□□□□□ -0.62
LIMA1-210ENST00000552045 NDUFV2P19404 249 aa11.18□□□□□ -0.62
LIMA1-210ENST00000552045 QPCTQ16769 361 aa11.18□□□□□ -0.62
LIMA1-210ENST00000552045 GDPD2Q9HCC8 539 aa11.18□□□□□ -0.62
LIMA1-210ENST00000552045 VARS2Q5ST30 1063 aaKnown RBP11.17□□□□□ -0.62
LIMA1-210ENST00000552045 PCDHB15Q9Y5E8 787 aa11.17□□□□□ -0.62
LIMA1-210ENST00000552045 RTL5Q5HYW3 569 aaPredicted RBP11.15□□□□□ -0.62
LIMA1-210ENST00000552045 PRM3Q9NNZ6 103 aa11.15□□□□□ -0.62
LIMA1-210ENST00000552045 FAM205CA6NFA0 338 aa11.14□□□□□ -0.63
LIMA1-210ENST00000552045 AP1G2O75843 785 aa11.14□□□□□ -0.63
LIMA1-210ENST00000552045 WWC1Q8IX03 1113 aa11.14□□□□□ -0.63
LIMA1-210ENST00000552045 RDH13Q8NBN7 331 aa11.14□□□□□ -0.63
LIMA1-210ENST00000552045 SMAPO00193 183 aa11.13□□□□□ -0.63
LIMA1-210ENST00000552045 KDM4AO75164 1064 aa11.13□□□□□ -0.63
LIMA1-210ENST00000552045 PRPF38BQ5VTL8 546 aaKnown RBP11.13□□□□□ -0.63
LIMA1-210ENST00000552045 ZBTB7CA1YPR0 619 aa11.12□□□□□ -0.63
LIMA1-210ENST00000552045 NUTM2BA6NNL0 878 aaPredicted RBP11.12□□□□□ -0.63
LIMA1-210ENST00000552045 NUTM2EB1AL46 878 aaPredicted RBP11.12□□□□□ -0.63
LIMA1-210ENST00000552045 ABL2P42684 1182 aa11.12□□□□□ -0.63
LIMA1-210ENST00000552045 PROX2Q3B8N5 592 aa11.12□□□□□ -0.63
LIMA1-210ENST00000552045 NUTM2DQ5VT03 806 aaPredicted RBP11.12□□□□□ -0.63
LIMA1-210ENST00000552045 NUTM2AQ8IVF1 878 aaPredicted RBP11.12□□□□□ -0.63
LIMA1-210ENST00000552045 USP17L8P0C7I0 530 aa11.11□□□□□ -0.63
LIMA1-210ENST00000552045 USP46P62068 366 aa11.11□□□□□ -0.63
LIMA1-210ENST00000552045 CABLES1Q8TDN4 633 aa11.11□□□□□ -0.63
LIMA1-210ENST00000552045 HS3ST6Q96QI5 342 aa11.11□□□□□ -0.63
LIMA1-210ENST00000552045 GCGRP47871 477 aa11.1□□□□□ -0.63
LIMA1-210ENST00000552045 ZNF687Q8N1G0 1237 aa11.1□□□□□ -0.63
LIMA1-210ENST00000552045 NECTIN2Q92692 538 aa11.1□□□□□ -0.63
LIMA1-210ENST00000552045 TBC1D2BQ9UPU7 963 aa11.1□□□□□ -0.63
LIMA1-210ENST00000552045 RSPH4AQ5TD94 716 aa11.09□□□□□ -0.63
LIMA1-210ENST00000552045 TRAIPQ9BWF2 469 aa11.09□□□□□ -0.63
LIMA1-210ENST00000552045 ZBTB3Q9H5J0 574 aa11.09□□□□□ -0.63
LIMA1-210ENST00000552045 POTEB3A0JP26 581 aa11.08□□□□□ -0.64
LIMA1-210ENST00000552045 HOXA2O43364 376 aa11.08□□□□□ -0.64
LIMA1-210ENST00000552045 PBX2P40425 430 aa11.08□□□□□ -0.64
LIMA1-210ENST00000552045 POTEBQ6S5H4 581 aa11.08□□□□□ -0.64
LIMA1-210ENST00000552045 CALR3Q96L12 384 aaKnown RBP11.08□□□□□ -0.64
LIMA1-210ENST00000552045 KCNH8Q96L42 1107 aa11.08□□□□□ -0.64
LIMA1-210ENST00000552045 KCNK17Q96T54 332 aa11.08□□□□□ -0.64
LIMA1-210ENST00000552045 ARHGAP33O14559 1287 aa11.07□□□□□ -0.64
LIMA1-210ENST00000552045 KIAA1468Q9P260 1216 aa11.07□□□□□ -0.64
LIMA1-210ENST00000552045 POM121CA8CG34 1229 aa11.06□□□□□ -0.64
LIMA1-210ENST00000552045 FDX1P10109 184 aa11.06□□□□□ -0.64
LIMA1-210ENST00000552045 POTEEQ6S8J3 1075 aa11.06□□□□□ -0.64
LIMA1-210ENST00000552045 GLMNQ92990 594 aa11.05□□□□□ -0.64
LIMA1-210ENST00000552045 GJD4Q96KN9 370 aaPredicted RBP11.05□□□□□ -0.64
LIMA1-210ENST00000552045 SLC10A3P09131 477 aa11.04□□□□□ -0.64
LIMA1-210ENST00000552045 ZBED2Q9BTP6 218 aa11.04□□□□□ -0.64
LIMA1-210ENST00000552045 PCDHGC3Q9UN70 934 aa11.04□□□□□ -0.64
LIMA1-210ENST00000552045 NDUFB9Q9Y6M9 179 aa11.04□□□□□ -0.64
LIMA1-210ENST00000552045 SWT1Q5T5J6 900 aaKnown RBP11.03□□□□□ -0.64
LIMA1-210ENST00000552045 PPP1R15AO75807 674 aaPredicted RBP11.02□□□□□ -0.65
LIMA1-210ENST00000552045 PSEN2P49810 448 aa11.02□□□□□ -0.65
LIMA1-210ENST00000552045 RETREG2Q8NC44 543 aa11.02□□□□□ -0.65
LIMA1-210ENST00000552045 GUCA2AQ02747 115 aa11.01□□□□□ -0.65
LIMA1-210ENST00000552045 CTDSPL2Q05D32 466 aa11.01□□□□□ -0.65
LIMA1-210ENST00000552045 KCTD17Q8N5Z5 321 aa11.01□□□□□ -0.65
LIMA1-210ENST00000552045 IRF5Q13568 498 aa11□□□□□ -0.65
LIMA1-210ENST00000552045 MTMR2Q13614 643 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms