RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ZFYVE9O95405 1425 aa24.78■■□□□ 1.56
VPS29-207ENST00000549970 ALKQ9UM73 1620 aa24.77■■□□□ 1.56
VPS29-207ENST00000549970 RIMS2Q9UQ26 1411 aa24.77■■□□□ 1.56
VPS29-207ENST00000549970 PPP1R15AO75807 674 aaPredicted RBP24.75■■□□□ 1.55
VPS29-207ENST00000549970 HSPA1LP34931 641 aa24.75■■□□□ 1.55
VPS29-207ENST00000549970 NAIPQ13075 1403 aa24.74■■□□□ 1.55
VPS29-207ENST00000549970 XIRP1Q702N8 1843 aaKnown RBP24.72■■□□□ 1.55
VPS29-207ENST00000549970 KCNA6P17658 529 aa24.72■■□□□ 1.55
VPS29-207ENST00000549970 HDGFP51858 240 aaKnown RBP24.72■■□□□ 1.55
VPS29-207ENST00000549970 PLEKHG1Q9ULL1 1385 aa24.71■■□□□ 1.55
VPS29-207ENST00000549970 NUTM2DQ5VT03 806 aaPredicted RBP24.7■■□□□ 1.54
VPS29-207ENST00000549970 SPHKAPQ2M3C7 1700 aa24.69■■□□□ 1.54
VPS29-207ENST00000549970 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.68■■□□□ 1.54
VPS29-207ENST00000549970 TMEM94Q12767 1356 aa24.67■■□□□ 1.54
VPS29-207ENST00000549970 HFM1A2PYH4 1435 aa24.66■■□□□ 1.54
VPS29-207ENST00000549970 NWD1Q149M9 1564 aa24.66■■□□□ 1.54
VPS29-207ENST00000549970 PROSER2Q86WR7 435 aaPredicted RBP24.65■■□□□ 1.54
VPS29-207ENST00000549970 RBM33Q96EV2 1170 aaKnown RBP24.65■■□□□ 1.54
VPS29-207ENST00000549970 NKTRP30414 1462 aaKnown RBP24.64■■□□□ 1.53
VPS29-207ENST00000549970 TRIM52Q96A61 297 aa24.63■■□□□ 1.53
VPS29-207ENST00000549970 ILDR2Q71H61 639 aa24.61■■□□□ 1.53
VPS29-207ENST00000549970 CHD2O14647 1828 aaKnown RBP24.61■■□□□ 1.53
VPS29-207ENST00000549970 TBX22Q9Y458 520 aa24.6■■□□□ 1.53
VPS29-207ENST00000549970 ADAMTS13Q76LX8 1427 aa24.6■■□□□ 1.53
VPS29-207ENST00000549970 CLTCL1P53675 1640 aa24.58■■□□□ 1.53
VPS29-207ENST00000549970 TRPM2O94759 1503 aa24.58■■□□□ 1.53
VPS29-207ENST00000549970 ZNF326Q5BKZ1 582 aaKnown RBP24.58■■□□□ 1.53
VPS29-207ENST00000549970 DIP2AQ14689 1571 aa24.57■■□□□ 1.52
VPS29-207ENST00000549970 SLC4A1APQ9BWU0 796 aaKnown RBP24.54■■□□□ 1.52
VPS29-207ENST00000549970 MSH6P52701 1360 aa24.54■■□□□ 1.52
VPS29-207ENST00000549970 MED1Q15648 1581 aaPredicted RBP24.53■■□□□ 1.52
VPS29-207ENST00000549970 KIF1BO60333 1816 aa24.51■■□□□ 1.51
VPS29-207ENST00000549970 PIK3R4Q99570 1358 aa24.51■■□□□ 1.51
VPS29-207ENST00000549970 FAM135BQ49AJ0 1406 aa24.51■■□□□ 1.51
VPS29-207ENST00000549970 NRXN3Q9Y4C0 1643 aa24.49■■□□□ 1.51
VPS29-207ENST00000549970 NEXMIFQ5QGS0 1516 aa24.48■■□□□ 1.51
VPS29-207ENST00000549970 SETBP1Q9Y6X0 1596 aa24.48■■□□□ 1.51
VPS29-207ENST00000549970 ROBO1Q9Y6N7 1651 aa24.47■■□□□ 1.51
VPS29-207ENST00000549970 C14orf37Q86TY3 774 aa24.47■■□□□ 1.51
VPS29-207ENST00000549970 PTPRUQ92729 1446 aa24.46■■□□□ 1.51
VPS29-207ENST00000549970 AMOTL2Q9Y2J4 779 aa24.46■■□□□ 1.51
VPS29-207ENST00000549970 FOXD1Q16676 465 aa24.44■■□□□ 1.5
VPS29-207ENST00000549970 NCOA3Q9Y6Q9 1424 aa24.44■■□□□ 1.5
VPS29-207ENST00000549970 SLAIN2Q9P270 581 aa24.42■■□□□ 1.5
VPS29-207ENST00000549970 METP08581 1390 aa24.41■■□□□ 1.5
VPS29-207ENST00000549970 XRN1Q8IZH2 1706 aaKnown RBP24.4■■□□□ 1.5
VPS29-207ENST00000549970 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.39■■□□□ 1.5
VPS29-207ENST00000549970 PHF23Q9BUL5 403 aaPredicted RBP24.39■■□□□ 1.49
VPS29-207ENST00000549970 SOCS7O14512 581 aa24.38■■□□□ 1.49
VPS29-207ENST00000549970 C19orf44Q9H6X5 657 aa24.38■■□□□ 1.49
VPS29-207ENST00000549970 MPHOSPH9Q99550 1183 aa24.37■■□□□ 1.49
VPS29-207ENST00000549970 ATF3P18847 181 aa24.36■■□□□ 1.49
VPS29-207ENST00000549970 VGFO15240 615 aaPredicted RBP24.35■■□□□ 1.49
VPS29-207ENST00000549970 CADPS2Q86UW7 1296 aa24.35■■□□□ 1.49
VPS29-207ENST00000549970 CCDC144AA2RUR9 1427 aa24.34■■□□□ 1.49
VPS29-207ENST00000549970 RPGRIP1LQ68CZ1 1315 aa24.34■■□□□ 1.49
VPS29-207ENST00000549970 PHLPP1O60346 1717 aa24.33■■□□□ 1.49
VPS29-207ENST00000549970 SETD5Q9C0A6 1442 aa24.33■■□□□ 1.49
VPS29-207ENST00000549970 PPLO60437 1756 aa24.32■■□□□ 1.48
VPS29-207ENST00000549970 SETD1AO15047 1707 aaKnown RBP24.29■■□□□ 1.48
VPS29-207ENST00000549970 DCCP43146 1447 aa24.27■■□□□ 1.48
VPS29-207ENST00000549970 RGL3Q3MIN7 710 aa24.27■■□□□ 1.48
VPS29-207ENST00000549970 ACIN1Q9UKV3 1341 aaKnown RBP24.25■■□□□ 1.47
VPS29-207ENST00000549970 RAB3GAP2Q9H2M9 1393 aa24.25■■□□□ 1.47
VPS29-207ENST00000549970 SPATA31E1Q6ZUB1 1445 aa24.25■■□□□ 1.47
VPS29-207ENST00000549970 COL16A1Q07092 1604 aaPredicted RBP24.24■■□□□ 1.47
VPS29-207ENST00000549970 ADGRL3Q9HAR2 1447 aa24.24■■□□□ 1.47
VPS29-207ENST00000549970 JCADQ9P266 1359 aa24.23■■□□□ 1.47
VPS29-207ENST00000549970 NALCNQ8IZF0 1738 aa24.23■■□□□ 1.47
VPS29-207ENST00000549970 PTCH1Q13635 1447 aa24.22■■□□□ 1.47
VPS29-207ENST00000549970 ADGRF5Q8IZF2 1346 aa24.22■■□□□ 1.47
VPS29-207ENST00000549970 BRINP3Q76B58 766 aa24.22■■□□□ 1.47
VPS29-207ENST00000549970 AHDC1Q5TGY3 1603 aaPredicted RBP24.21■■□□□ 1.47
VPS29-207ENST00000549970 MST1RQ04912 1400 aa24.21■■□□□ 1.47
VPS29-207ENST00000549970 ROBO2Q9HCK4 1378 aa24.2■■□□□ 1.46
VPS29-207ENST00000549970 IFT172Q9UG01 1749 aa24.2■■□□□ 1.46
VPS29-207ENST00000549970 RGS17Q9UGC6 210 aaPredicted RBP24.19■■□□□ 1.46
VPS29-207ENST00000549970 ANKRD30BQ9BXX2 1392 aa24.18■■□□□ 1.46
VPS29-207ENST00000549970 ASXL1Q8IXJ9 1541 aa24.18■■□□□ 1.46
VPS29-207ENST00000549970 PRAG1Q86YV5 1406 aa24.16■■□□□ 1.46
VPS29-207ENST00000549970 PIK3C2GO75747 1445 aa24.11■■□□□ 1.45
VPS29-207ENST00000549970 NHSL1Q5SYE7 1610 aa24.11■■□□□ 1.45
VPS29-207ENST00000549970 SHPRHQ149N8 1683 aa24.11■■□□□ 1.45
VPS29-207ENST00000549970 SPATA31A6Q5VVP1 1343 aa24.1■■□□□ 1.45
VPS29-207ENST00000549970 STK26Q9P289 416 aa24.1■■□□□ 1.45
VPS29-207ENST00000549970 C1orf167Q5SNV9 1468 aa24.1■■□□□ 1.45
VPS29-207ENST00000549970 DDX17Q92841 729 aaKnown RBP24.09■■□□□ 1.45
VPS29-207ENST00000549970 LRP6O75581 1613 aa24.09■■□□□ 1.45
VPS29-207ENST00000549970 TMEM132EQ6IEE7 984 aa24.08■■□□□ 1.45
VPS29-207ENST00000549970 POTEAQ6S8J7 498 aa24.07■■□□□ 1.44
VPS29-207ENST00000549970 LRPPRCP42704 1394 aaKnown RBP24.06■■□□□ 1.44
VPS29-207ENST00000549970 MEX3CQ5U5Q3 659 aaKnown RBP24.06■■□□□ 1.44
VPS29-207ENST00000549970 TECPR2O15040 1411 aa24.05■■□□□ 1.44
VPS29-207ENST00000549970 WAPLQ7Z5K2 1190 aa24.04■■□□□ 1.44
VPS29-207ENST00000549970 ORAI2Q96SN7 254 aa24.04■■□□□ 1.44
VPS29-207ENST00000549970 MYOM2P54296 1465 aa24.03■■□□□ 1.44
VPS29-207ENST00000549970 KNDC1Q76NI1 1749 aa24.03■■□□□ 1.44
VPS29-207ENST00000549970 ABCC11Q96J66 1382 aa24.03■■□□□ 1.44
VPS29-207ENST00000549970 YTHDC2Q9H6S0 1430 aaKnown RBP24.02■■□□□ 1.44
VPS29-207ENST00000549970 NRXN1Q9ULB1 1477 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms