RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 KCNA6P17658 529 aa10.85□□□□□ -0.67
PTCH1-219ENST00000549678 HSPA1LP34931 641 aa10.85□□□□□ -0.67
PTCH1-219ENST00000549678 CHGAP10645 457 aaKnown RBP10.84□□□□□ -0.67
PTCH1-219ENST00000549678 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.84□□□□□ -0.67
PTCH1-219ENST00000549678 NKTRP30414 1462 aaKnown RBP10.83□□□□□ -0.68
PTCH1-219ENST00000549678 PLEKHG1Q9ULL1 1385 aa10.83□□□□□ -0.68
PTCH1-219ENST00000549678 ALKQ9UM73 1620 aa10.83□□□□□ -0.68
PTCH1-219ENST00000549678 ZFYVE9O95405 1425 aa10.83□□□□□ -0.68
PTCH1-219ENST00000549678 MYO5BQ9ULV0 1848 aa10.82□□□□□ -0.68
PTCH1-219ENST00000549678 SOCS7O14512 581 aa10.82□□□□□ -0.68
PTCH1-219ENST00000549678 PPP1R15AO75807 674 aaPredicted RBP10.81□□□□□ -0.68
PTCH1-219ENST00000549678 SLC4A1APQ9BWU0 796 aaKnown RBP10.81□□□□□ -0.68
PTCH1-219ENST00000549678 RIMS2Q9UQ26 1411 aa10.81□□□□□ -0.68
PTCH1-219ENST00000549678 TMEM131LA2VDJ0 1609 aa10.8□□□□□ -0.68
PTCH1-219ENST00000549678 TMEM94Q12767 1356 aa10.8□□□□□ -0.68
PTCH1-219ENST00000549678 BCANQ96GW7 911 aa10.8□□□□□ -0.68
PTCH1-219ENST00000549678 SLC26A8Q96RN1 970 aa10.8□□□□□ -0.68
PTCH1-219ENST00000549678 TBX22Q9Y458 520 aa10.8□□□□□ -0.68
PTCH1-219ENST00000549678 FAM135BQ49AJ0 1406 aa10.8□□□□□ -0.68
PTCH1-219ENST00000549678 SETD5Q9C0A6 1442 aa10.8□□□□□ -0.68
PTCH1-219ENST00000549678 NWD1Q149M9 1564 aa10.8□□□□□ -0.68
PTCH1-219ENST00000549678 KIF1BO60333 1816 aa10.79□□□□□ -0.68
PTCH1-219ENST00000549678 PIK3R4Q99570 1358 aa10.79□□□□□ -0.68
PTCH1-219ENST00000549678 ACIN1Q9UKV3 1341 aaKnown RBP10.79□□□□□ -0.68
PTCH1-219ENST00000549678 NCOA3Q9Y6Q9 1424 aa10.78□□□□□ -0.68
PTCH1-219ENST00000549678 PROSER2Q86WR7 435 aaPredicted RBP10.78□□□□□ -0.68
PTCH1-219ENST00000549678 DIP2AQ14689 1571 aa10.77□□□□□ -0.68
PTCH1-219ENST00000549678 MED1Q15648 1581 aaPredicted RBP10.77□□□□□ -0.69
PTCH1-219ENST00000549678 XIRP1Q702N8 1843 aaKnown RBP10.77□□□□□ -0.69
PTCH1-219ENST00000549678 MSH6P52701 1360 aa10.77□□□□□ -0.69
PTCH1-219ENST00000549678 TRPM2O94759 1503 aa10.76□□□□□ -0.69
PTCH1-219ENST00000549678 ZNF326Q5BKZ1 582 aaKnown RBP10.76□□□□□ -0.69
PTCH1-219ENST00000549678 RAB3GAP2Q9H2M9 1393 aa10.76□□□□□ -0.69
PTCH1-219ENST00000549678 SENP3Q9H4L4 574 aaPredicted RBP10.75□□□□□ -0.69
PTCH1-219ENST00000549678 CLTCL1P53675 1640 aa10.75□□□□□ -0.69
PTCH1-219ENST00000549678 CHD2O14647 1828 aaKnown RBP10.74□□□□□ -0.69
PTCH1-219ENST00000549678 ADAMTS13Q76LX8 1427 aa10.74□□□□□ -0.69
PTCH1-219ENST00000549678 MPHOSPH9Q99550 1183 aa10.73□□□□□ -0.69
PTCH1-219ENST00000549678 PHF23Q9BUL5 403 aaPredicted RBP10.73□□□□□ -0.69
PTCH1-219ENST00000549678 FOXD1Q16676 465 aa10.72□□□□□ -0.69
PTCH1-219ENST00000549678 CCDC144AA2RUR9 1427 aa10.71□□□□□ -0.69
PTCH1-219ENST00000549678 NUTM2DQ5VT03 806 aaPredicted RBP10.71□□□□□ -0.69
PTCH1-219ENST00000549678 CADPS2Q86UW7 1296 aa10.71□□□□□ -0.69
PTCH1-219ENST00000549678 SLAIN2Q9P270 581 aa10.71□□□□□ -0.69
PTCH1-219ENST00000549678 SETBP1Q9Y6X0 1596 aa10.7□□□□□ -0.7
PTCH1-219ENST00000549678 C19orf44Q9H6X5 657 aa10.7□□□□□ -0.7
PTCH1-219ENST00000549678 C14orf37Q86TY3 774 aa10.69□□□□□ -0.7
PTCH1-219ENST00000549678 RBM33Q96EV2 1170 aaKnown RBP10.69□□□□□ -0.7
PTCH1-219ENST00000549678 AMOTL2Q9Y2J4 779 aa10.69□□□□□ -0.7
PTCH1-219ENST00000549678 ROBO1Q9Y6N7 1651 aa10.69□□□□□ -0.7
PTCH1-219ENST00000549678 DCCP43146 1447 aa10.68□□□□□ -0.7
PTCH1-219ENST00000549678 ATF3P18847 181 aa10.68□□□□□ -0.7
PTCH1-219ENST00000549678 RPGRIP1LQ68CZ1 1315 aa10.67□□□□□ -0.7
PTCH1-219ENST00000549678 JCADQ9P266 1359 aa10.66□□□□□ -0.7
PTCH1-219ENST00000549678 VGFO15240 615 aaPredicted RBP10.66□□□□□ -0.7
PTCH1-219ENST00000549678 PPLO60437 1756 aa10.66□□□□□ -0.7
PTCH1-219ENST00000549678 NEXMIFQ5QGS0 1516 aa10.65□□□□□ -0.7
PTCH1-219ENST00000549678 RGL3Q3MIN7 710 aa10.65□□□□□ -0.7
PTCH1-219ENST00000549678 PTPRUQ92729 1446 aa10.65□□□□□ -0.7
PTCH1-219ENST00000549678 NRXN3Q9Y4C0 1643 aa10.65□□□□□ -0.7
PTCH1-219ENST00000549678 XRN1Q8IZH2 1706 aaKnown RBP10.64□□□□□ -0.71
PTCH1-219ENST00000549678 TRIM26Q12899 539 aaPredicted RBP10.64□□□□□ -0.71
PTCH1-219ENST00000549678 RGS17Q9UGC6 210 aaPredicted RBP10.64□□□□□ -0.71
PTCH1-219ENST00000549678 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.64□□□□□ -0.71
PTCH1-219ENST00000549678 HRCP23327 699 aa10.63□□□□□ -0.71
PTCH1-219ENST00000549678 PRAG1Q86YV5 1406 aa10.63□□□□□ -0.71
PTCH1-219ENST00000549678 METP08581 1390 aa10.63□□□□□ -0.71
PTCH1-219ENST00000549678 AHDC1Q5TGY3 1603 aaPredicted RBP10.62□□□□□ -0.71
PTCH1-219ENST00000549678 SPATA31A6Q5VVP1 1343 aa10.62□□□□□ -0.71
PTCH1-219ENST00000549678 PHLPP1O60346 1717 aa10.62□□□□□ -0.71
PTCH1-219ENST00000549678 PTCH1Q13635 1447 aa10.62□□□□□ -0.71
PTCH1-219ENST00000549678 IFT172Q9UG01 1749 aa10.61□□□□□ -0.71
PTCH1-219ENST00000549678 ADGRL3Q9HAR2 1447 aa10.61□□□□□ -0.71
PTCH1-219ENST00000549678 COL16A1Q07092 1604 aaPredicted RBP10.61□□□□□ -0.71
PTCH1-219ENST00000549678 BRINP3Q76B58 766 aa10.6□□□□□ -0.71
PTCH1-219ENST00000549678 MST1RQ04912 1400 aa10.59□□□□□ -0.71
PTCH1-219ENST00000549678 ANKRD30BQ9BXX2 1392 aa10.58□□□□□ -0.72
PTCH1-219ENST00000549678 ASXL1Q8IXJ9 1541 aa10.58□□□□□ -0.72
PTCH1-219ENST00000549678 SPATA31E1Q6ZUB1 1445 aa10.58□□□□□ -0.72
PTCH1-219ENST00000549678 SHPRHQ149N8 1683 aa10.57□□□□□ -0.72
PTCH1-219ENST00000549678 SETD1AO15047 1707 aaKnown RBP10.56□□□□□ -0.72
PTCH1-219ENST00000549678 LAMC1P11047 1609 aa10.56□□□□□ -0.72
PTCH1-219ENST00000549678 ZNF772Q68DY9 489 aaPredicted RBP10.56□□□□□ -0.72
PTCH1-219ENST00000549678 LRRC59Q96AG4 307 aaKnown RBP10.56□□□□□ -0.72
PTCH1-219ENST00000549678 ROBO2Q9HCK4 1378 aa10.55□□□□□ -0.72
PTCH1-219ENST00000549678 POTEAQ6S8J7 498 aa10.55□□□□□ -0.72
PTCH1-219ENST00000549678 NHSL1Q5SYE7 1610 aa10.55□□□□□ -0.72
PTCH1-219ENST00000549678 TECPR2O15040 1411 aa10.54□□□□□ -0.72
PTCH1-219ENST00000549678 MEX3CQ5U5Q3 659 aaKnown RBP10.54□□□□□ -0.72
PTCH1-219ENST00000549678 NALCNQ8IZF0 1738 aa10.54□□□□□ -0.72
PTCH1-219ENST00000549678 KDM2AQ9Y2K7 1162 aa10.54□□□□□ -0.72
PTCH1-219ENST00000549678 MYOM2P54296 1465 aa10.54□□□□□ -0.72
PTCH1-219ENST00000549678 C1orf167Q5SNV9 1468 aa10.54□□□□□ -0.72
PTCH1-219ENST00000549678 ADGRF5Q8IZF2 1346 aa10.54□□□□□ -0.72
PTCH1-219ENST00000549678 DCAF11Q8TEB1 546 aa10.53□□□□□ -0.72
PTCH1-219ENST00000549678 LRPPRCP42704 1394 aaKnown RBP10.52□□□□□ -0.72
PTCH1-219ENST00000549678 ABCC11Q96J66 1382 aa10.52□□□□□ -0.72
PTCH1-219ENST00000549678 LRP6O75581 1613 aa10.52□□□□□ -0.73
PTCH1-219ENST00000549678 STK26Q9P289 416 aa10.52□□□□□ -0.73
PTCH1-219ENST00000549678 PIK3C2GO75747 1445 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms