RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NOS1P29475 1434 aa26.37■■□□□ 1.81
VPS29-204ENST00000548259 TET3O43151 1660 aa26.37■■□□□ 1.81
VPS29-204ENST00000548259 ADGRB3O60242 1522 aa26.36■■□□□ 1.81
VPS29-204ENST00000548259 ROBO1Q9Y6N7 1651 aa26.36■■□□□ 1.81
VPS29-204ENST00000548259 JCADQ9P266 1359 aa26.33■■□□□ 1.81
VPS29-204ENST00000548259 RPRD2Q5VT52 1461 aaKnown RBP26.31■■□□□ 1.8
VPS29-204ENST00000548259 NWD1Q149M9 1564 aa26.31■■□□□ 1.8
VPS29-204ENST00000548259 PLEKHG1Q9ULL1 1385 aa26.3■■□□□ 1.8
VPS29-204ENST00000548259 C14orf37Q86TY3 774 aa26.29■■□□□ 1.8
VPS29-204ENST00000548259 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.28■■□□□ 1.8
VPS29-204ENST00000548259 NCOA3Q9Y6Q9 1424 aa26.26■■□□□ 1.79
VPS29-204ENST00000548259 TBX22Q9Y458 520 aa26.26■■□□□ 1.79
VPS29-204ENST00000548259 ADGRL2O95490 1459 aa26.24■■□□□ 1.79
VPS29-204ENST00000548259 RIMS2Q9UQ26 1411 aa26.24■■□□□ 1.79
VPS29-204ENST00000548259 FAM50AQ14320 339 aaKnown RBP26.24■■□□□ 1.79
VPS29-204ENST00000548259 MEX3CQ5U5Q3 659 aaKnown RBP26.24■■□□□ 1.79
VPS29-204ENST00000548259 ANKRD50Q9ULJ7 1429 aa26.23■■□□□ 1.79
VPS29-204ENST00000548259 SPATA31A6Q5VVP1 1343 aa26.23■■□□□ 1.79
VPS29-204ENST00000548259 ZFYVE9O95405 1425 aa26.22■■□□□ 1.79
VPS29-204ENST00000548259 CADPS2Q86UW7 1296 aa26.22■■□□□ 1.79
VPS29-204ENST00000548259 CHGAP10645 457 aaKnown RBP26.21■■□□□ 1.79
VPS29-204ENST00000548259 ATF3P18847 181 aa26.21■■□□□ 1.79
VPS29-204ENST00000548259 ZNF772Q68DY9 489 aaPredicted RBP26.21■■□□□ 1.79
VPS29-204ENST00000548259 PHLPP1O60346 1717 aa26.21■■□□□ 1.79
VPS29-204ENST00000548259 C19orf44Q9H6X5 657 aa26.18■■□□□ 1.78
VPS29-204ENST00000548259 PIK3R4Q99570 1358 aa26.16■■□□□ 1.78
VPS29-204ENST00000548259 CHD2O14647 1828 aaKnown RBP26.12■■□□□ 1.77
VPS29-204ENST00000548259 TMEM131LA2VDJ0 1609 aa26.1■■□□□ 1.77
VPS29-204ENST00000548259 COL16A1Q07092 1604 aaPredicted RBP26.1■■□□□ 1.77
VPS29-204ENST00000548259 DIP2AQ14689 1571 aa26.09■■□□□ 1.77
VPS29-204ENST00000548259 GCC2Q8IWJ2 1684 aa26.08■■□□□ 1.77
VPS29-204ENST00000548259 NUTM2DQ5VT03 806 aaPredicted RBP26.07■■□□□ 1.76
VPS29-204ENST00000548259 TRIM52Q96A61 297 aa26.07■■□□□ 1.76
VPS29-204ENST00000548259 ADAMTS13Q76LX8 1427 aa26.06■■□□□ 1.76
VPS29-204ENST00000548259 RXRBP28702 533 aa26.06■■□□□ 1.76
VPS29-204ENST00000548259 AMOTL2Q9Y2J4 779 aa26.05■■□□□ 1.76
VPS29-204ENST00000548259 AHDC1Q5TGY3 1603 aaPredicted RBP26.05■■□□□ 1.76
VPS29-204ENST00000548259 LRP6O75581 1613 aa26.04■■□□□ 1.76
VPS29-204ENST00000548259 UPF1Q92900 1129 aaKnown RBP eCLIP26.03■■□□□ 1.76
VPS29-204ENST00000548259 TRPM2O94759 1503 aa26.03■■□□□ 1.76
VPS29-204ENST00000548259 SETD1AO15047 1707 aaKnown RBP26.02■■□□□ 1.76
VPS29-204ENST00000548259 BRINP3Q76B58 766 aa26.02■■□□□ 1.76
VPS29-204ENST00000548259 UNC13BO14795 1591 aa26■■□□□ 1.75
VPS29-204ENST00000548259 DCCP43146 1447 aa26■■□□□ 1.75
VPS29-204ENST00000548259 NUTM2BA6NNL0 878 aaPredicted RBP26■■□□□ 1.75
VPS29-204ENST00000548259 NUTM2EB1AL46 878 aaPredicted RBP26■■□□□ 1.75
VPS29-204ENST00000548259 NUTM2AQ8IVF1 878 aaPredicted RBP26■■□□□ 1.75
VPS29-204ENST00000548259 MYO5BQ9ULV0 1848 aa26■■□□□ 1.75
VPS29-204ENST00000548259 SIPA1L2Q9P2F8 1722 aaPredicted RBP26■■□□□ 1.75
VPS29-204ENST00000548259 ROCK1Q13464 1354 aa25.98■■□□□ 1.75
VPS29-204ENST00000548259 SHPRHQ149N8 1683 aa25.98■■□□□ 1.75
VPS29-204ENST00000548259 NUP155O75694 1391 aa25.97■■□□□ 1.75
VPS29-204ENST00000548259 LRRC59Q96AG4 307 aaKnown RBP25.96■■□□□ 1.75
VPS29-204ENST00000548259 CDK12Q9NYV4 1490 aaPredicted RBP25.94■■□□□ 1.74
VPS29-204ENST00000548259 ZNF326Q5BKZ1 582 aaKnown RBP25.93■■□□□ 1.74
VPS29-204ENST00000548259 E9PCH4 1651 aa25.93■■□□□ 1.74
VPS29-204ENST00000548259 AFF2P51816 1311 aa25.92■■□□□ 1.74
VPS29-204ENST00000548259 PTPRUQ92729 1446 aa25.91■■□□□ 1.74
VPS29-204ENST00000548259 SETD5Q9C0A6 1442 aa25.91■■□□□ 1.74
VPS29-204ENST00000548259 IQGAP3Q86VI3 1631 aa25.91■■□□□ 1.74
VPS29-204ENST00000548259 ASXL1Q8IXJ9 1541 aa25.89■■□□□ 1.74
VPS29-204ENST00000548259 MST1RQ04912 1400 aa25.86■■□□□ 1.73
VPS29-204ENST00000548259 RBM6P78332 1123 aaKnown RBP25.85■■□□□ 1.73
VPS29-204ENST00000548259 C8orf37Q96NL8 207 aa25.85■■□□□ 1.73
VPS29-204ENST00000548259 QTRT2Q9H974 415 aaKnown RBP25.84■■□□□ 1.73
VPS29-204ENST00000548259 SETBP1Q9Y6X0 1596 aa25.84■■□□□ 1.73
VPS29-204ENST00000548259 ITGAEP38570 1179 aa25.83■■□□□ 1.73
VPS29-204ENST00000548259 ADGRL3Q9HAR2 1447 aa25.81■■□□□ 1.72
VPS29-204ENST00000548259 NGLY1Q96IV0 654 aa25.81■■□□□ 1.72
VPS29-204ENST00000548259 METP08581 1390 aa25.81■■□□□ 1.72
VPS29-204ENST00000548259 XRN1Q8IZH2 1706 aaKnown RBP25.8■■□□□ 1.72
VPS29-204ENST00000548259 PNPLA6Q8IY17 1366 aa25.79■■□□□ 1.72
VPS29-204ENST00000548259 FOXD1Q16676 465 aa25.78■■□□□ 1.72
VPS29-204ENST00000548259 NHSL1Q5SYE7 1610 aa25.76■■□□□ 1.71
VPS29-204ENST00000548259 NRXN3Q9Y4C0 1643 aa25.75■■□□□ 1.71
VPS29-204ENST00000548259 ADAMTS2O95450 1211 aa25.74■■□□□ 1.71
VPS29-204ENST00000548259 DDX17Q92841 729 aaKnown RBP25.74■■□□□ 1.71
VPS29-204ENST00000548259 RGS12O14924 1447 aa25.73■■□□□ 1.71
VPS29-204ENST00000548259 VGFO15240 615 aaPredicted RBP25.71■■□□□ 1.71
VPS29-204ENST00000548259 SPHKAPQ2M3C7 1700 aa25.71■■□□□ 1.71
VPS29-204ENST00000548259 ATAD2Q6PL18 1390 aa25.7■■□□□ 1.71
VPS29-204ENST00000548259 C1orf167Q5SNV9 1468 aa25.7■■□□□ 1.7
VPS29-204ENST00000548259 USP21Q9UK80 565 aa25.69■■□□□ 1.7
VPS29-204ENST00000548259 TRPC5Q9UL62 973 aaPredicted RBP25.69■■□□□ 1.7
VPS29-204ENST00000548259 PTCH1Q13635 1447 aa25.67■■□□□ 1.7
VPS29-204ENST00000548259 SOS2Q07890 1332 aaPredicted RBP25.66■■□□□ 1.7
VPS29-204ENST00000548259 NEXMIFQ5QGS0 1516 aa25.65■■□□□ 1.7
VPS29-204ENST00000548259 ORAI2Q96SN7 254 aa25.63■■□□□ 1.69
VPS29-204ENST00000548259 FNBP4Q8N3X1 1017 aaPredicted RBP25.62■■□□□ 1.69
VPS29-204ENST00000548259 NALCNQ8IZF0 1738 aa25.62■■□□□ 1.69
VPS29-204ENST00000548259 RPGRIP1LQ68CZ1 1315 aa25.62■■□□□ 1.69
VPS29-204ENST00000548259 ROBO2Q9HCK4 1378 aa25.59■■□□□ 1.69
VPS29-204ENST00000548259 ZRANB1Q9UGI0 708 aa25.59■■□□□ 1.69
VPS29-204ENST00000548259 HFM1A2PYH4 1435 aa25.59■■□□□ 1.69
VPS29-204ENST00000548259 NPHP3Q7Z494 1330 aa25.59■■□□□ 1.69
VPS29-204ENST00000548259 CLTCL1P53675 1640 aa25.59■■□□□ 1.69
VPS29-204ENST00000548259 LAMC1P11047 1609 aa25.56■■□□□ 1.68
VPS29-204ENST00000548259 CCDC125Q86Z20 511 aa25.56■■□□□ 1.68
VPS29-204ENST00000548259 PRAG1Q86YV5 1406 aa25.55■■□□□ 1.68
VPS29-204ENST00000548259 ESCO1Q5FWF5 840 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms