RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	FAM135B	Q49AJ0	1406 aa		35.37	■■■■□ 3.25
SMARCD1-204	ENST00000547637	CHGA	P10645	457 aa	Known RBP	35.36	■■■■□ 3.25
SMARCD1-204	ENST00000547637	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	35.36	■■■■□ 3.25
SMARCD1-204	ENST00000547637	ROCK1	Q13464	1354 aa		35.36	■■■■□ 3.25
SMARCD1-204	ENST00000547637	GCC2	Q8IWJ2	1684 aa		35.33	■■■■□ 3.25
SMARCD1-204	ENST00000547637	NKTR	P30414	1462 aa	Known RBP	35.32	■■■■□ 3.24
SMARCD1-204	ENST00000547637	PLEKHG1	Q9ULL1	1385 aa		35.31	■■■■□ 3.24
SMARCD1-204	ENST00000547637	MSH6	P52701	1360 aa		35.3	■■■■□ 3.24
SMARCD1-204	ENST00000547637	RIMS2	Q9UQ26	1411 aa		35.3	■■■■□ 3.24
SMARCD1-204	ENST00000547637	UNC13B	O14795	1591 aa		35.29	■■■■□ 3.24
SMARCD1-204	ENST00000547637	ZFYVE9	O95405	1425 aa		35.27	■■■■□ 3.24
SMARCD1-204	ENST00000547637	RBM33	Q96EV2	1170 aa	Known RBP	35.27	■■■■□ 3.24
SMARCD1-204	ENST00000547637	ITGAE	P38570	1179 aa		35.26	■■■■□ 3.24
SMARCD1-204	ENST00000547637	TBX22	Q9Y458	520 aa		35.26	■■■■□ 3.24
SMARCD1-204	ENST00000547637	NWD1	Q149M9	1564 aa		35.24	■■■■□ 3.23
SMARCD1-204	ENST00000547637	NUP155	O75694	1391 aa		35.24	■■■■□ 3.23
SMARCD1-204	ENST00000547637	MYO5B	Q9ULV0	1848 aa		35.23	■■■■□ 3.23
SMARCD1-204	ENST00000547637	TMEM131L	A2VDJ0	1609 aa		35.23	■■■■□ 3.23
SMARCD1-204	ENST00000547637	SLAIN2	Q9P270	581 aa		35.2	■■■■□ 3.23
SMARCD1-204	ENST00000547637		E9PCH4	1651 aa		35.18	■■■■□ 3.22
SMARCD1-204	ENST00000547637	IQGAP3	Q86VI3	1631 aa		35.17	■■■■□ 3.22
SMARCD1-204	ENST00000547637	C14orf37	Q86TY3	774 aa		35.17	■■■■□ 3.22
SMARCD1-204	ENST00000547637	CHD2	O14647	1828 aa	Known RBP	35.16	■■■■□ 3.22
SMARCD1-204	ENST00000547637	ROBO1	Q9Y6N7	1651 aa		35.16	■■■■□ 3.22
SMARCD1-204	ENST00000547637	NCOA3	Q9Y6Q9	1424 aa		35.14	■■■■□ 3.22
SMARCD1-204	ENST00000547637	NUTM2D	Q5VT03	806 aa	Predicted RBP	35.13	■■■■□ 3.21
SMARCD1-204	ENST00000547637	PIK3R4	Q99570	1358 aa		35.12	■■■■□ 3.21
SMARCD1-204	ENST00000547637	PPARGC1B	Q86YN6	1023 aa	Known RBP	35.1	■■■■□ 3.21
SMARCD1-204	ENST00000547637	DIP2A	Q14689	1571 aa		35.07	■■■■□ 3.2
SMARCD1-204	ENST00000547637	CADPS2	Q86UW7	1296 aa		35.06	■■■■□ 3.2
SMARCD1-204	ENST00000547637	RGS17	Q9UGC6	210 aa	Predicted RBP	35.05	■■■■□ 3.2
SMARCD1-204	ENST00000547637	ATF3	P18847	181 aa		35.04	■■■■□ 3.2
SMARCD1-204	ENST00000547637	C19orf44	Q9H6X5	657 aa		35.04	■■■■□ 3.2
SMARCD1-204	ENST00000547637	ADAMTS13	Q76LX8	1427 aa		35.04	■■■■□ 3.2
SMARCD1-204	ENST00000547637	ZNF326	Q5BKZ1	582 aa	Known RBP	35.02	■■■■□ 3.2
SMARCD1-204	ENST00000547637	AMOTL2	Q9Y2J4	779 aa		35	■■■■□ 3.19
SMARCD1-204	ENST00000547637	JCAD	Q9P266	1359 aa		35	■■■■□ 3.19
SMARCD1-204	ENST00000547637	PHLPP1	O60346	1717 aa		34.99	■■■■□ 3.19
SMARCD1-204	ENST00000547637	TRPM2	O94759	1503 aa		34.99	■■■■□ 3.19
SMARCD1-204	ENST00000547637	SPHKAP	Q2M3C7	1700 aa		34.92	■■■■□ 3.18
SMARCD1-204	ENST00000547637	POTEA	Q6S8J7	498 aa		34.89	■■■■□ 3.18
SMARCD1-204	ENST00000547637	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	34.89	■■■■□ 3.18
SMARCD1-204	ENST00000547637	SPATA31A6	Q5VVP1	1343 aa		34.86	■■■■□ 3.17
SMARCD1-204	ENST00000547637	RRBP1	Q9P2E9	1410 aa	Known RBP	34.84	■■■■□ 3.17
SMARCD1-204	ENST00000547637	MEX3C	Q5U5Q3	659 aa	Known RBP	34.83	■■■■□ 3.17
SMARCD1-204	ENST00000547637	PTPRU	Q92729	1446 aa		34.82	■■■■□ 3.17
SMARCD1-204	ENST00000547637	TRIM52	Q96A61	297 aa		34.81	■■■■□ 3.16
SMARCD1-204	ENST00000547637	SETBP1	Q9Y6X0	1596 aa		34.81	■■■■□ 3.16
SMARCD1-204	ENST00000547637	DCC	P43146	1447 aa		34.81	■■■■□ 3.16
SMARCD1-204	ENST00000547637	COL16A1	Q07092	1604 aa	Predicted RBP	34.8	■■■■□ 3.16
SMARCD1-204	ENST00000547637	NAIP	Q13075	1403 aa		34.77	■■■■□ 3.16
SMARCD1-204	ENST00000547637	BRINP3	Q76B58	766 aa		34.76	■■■■□ 3.16
SMARCD1-204	ENST00000547637	AHDC1	Q5TGY3	1603 aa	Predicted RBP	34.76	■■■■□ 3.15
SMARCD1-204	ENST00000547637	VGF	O15240	615 aa	Predicted RBP	34.75	■■■■□ 3.15
SMARCD1-204	ENST00000547637	ZNF772	Q68DY9	489 aa	Predicted RBP	34.75	■■■■□ 3.15
SMARCD1-204	ENST00000547637	KIF1B	O60333	1816 aa		34.74	■■■■□ 3.15
SMARCD1-204	ENST00000547637	NRXN3	Q9Y4C0	1643 aa		34.73	■■■■□ 3.15
SMARCD1-204	ENST00000547637	MET	P08581	1390 aa		34.73	■■■■□ 3.15
SMARCD1-204	ENST00000547637	CLTCL1	P53675	1640 aa		34.71	■■■■□ 3.15
SMARCD1-204	ENST00000547637	XRN1	Q8IZH2	1706 aa	Known RBP	34.71	■■■■□ 3.15
SMARCD1-204	ENST00000547637	SLC4A1AP	Q9BWU0	796 aa	Known RBP	34.69	■■■■□ 3.14
SMARCD1-204	ENST00000547637	NEXMIF	Q5QGS0	1516 aa		34.68	■■■■□ 3.14
SMARCD1-204	ENST00000547637	RPGRIP1L	Q68CZ1	1315 aa		34.67	■■■■□ 3.14
SMARCD1-204	ENST00000547637	LRRC59	Q96AG4	307 aa	Known RBP	34.66	■■■■□ 3.14
SMARCD1-204	ENST00000547637	SHPRH	Q149N8	1683 aa		34.66	■■■■□ 3.14
SMARCD1-204	ENST00000547637	HFM1	A2PYH4	1435 aa		34.65	■■■■□ 3.14
SMARCD1-204	ENST00000547637	MST1R	Q04912	1400 aa		34.64	■■■■□ 3.14
SMARCD1-204	ENST00000547637	NUTM2B	A6NNL0	878 aa	Predicted RBP	34.63	■■■■□ 3.13
SMARCD1-204	ENST00000547637	NUTM2E	B1AL46	878 aa	Predicted RBP	34.63	■■■■□ 3.13
SMARCD1-204	ENST00000547637	NUTM2A	Q8IVF1	878 aa	Predicted RBP	34.63	■■■■□ 3.13
SMARCD1-204	ENST00000547637	ADGRL3	Q9HAR2	1447 aa		34.63	■■■■□ 3.13
SMARCD1-204	ENST00000547637	ASXL1	Q8IXJ9	1541 aa		34.61	■■■■□ 3.13
SMARCD1-204	ENST00000547637	LRP6	O75581	1613 aa		34.61	■■■■□ 3.13
SMARCD1-204	ENST00000547637	SETD5	Q9C0A6	1442 aa		34.58	■■■■□ 3.13
SMARCD1-204	ENST00000547637	RXRB	P28702	533 aa		34.54	■■■■□ 3.12
SMARCD1-204	ENST00000547637	PTCH1	Q13635	1447 aa		34.51	■■■■□ 3.12
SMARCD1-204	ENST00000547637	NHSL1	Q5SYE7	1610 aa		34.51	■■■■□ 3.11
SMARCD1-204	ENST00000547637	NALCN	Q8IZF0	1738 aa		34.47	■■■■□ 3.11
SMARCD1-204	ENST00000547637	C1orf167	Q5SNV9	1468 aa		34.46	■■■■□ 3.11
SMARCD1-204	ENST00000547637	AFF2	P51816	1311 aa		34.46	■■■■□ 3.11
SMARCD1-204	ENST00000547637	DDX17	Q92841	729 aa	Known RBP	34.44	■■■■□ 3.1
SMARCD1-204	ENST00000547637	ROBO2	Q9HCK4	1378 aa		34.44	■■■■□ 3.1
SMARCD1-204	ENST00000547637	SETD1A	O15047	1707 aa	Known RBP	34.44	■■■■□ 3.1
SMARCD1-204	ENST00000547637	CCDC144A	A2RUR9	1427 aa		34.42	■■■■□ 3.1
SMARCD1-204	ENST00000547637	PNPLA6	Q8IY17	1366 aa		34.41	■■■■□ 3.1
SMARCD1-204	ENST00000547637	ACIN1	Q9UKV3	1341 aa	Known RBP	34.41	■■■■□ 3.1
SMARCD1-204	ENST00000547637	C8orf37	Q96NL8	207 aa		34.41	■■■■□ 3.1
SMARCD1-204	ENST00000547637	PPL	O60437	1756 aa		34.41	■■■■□ 3.1
SMARCD1-204	ENST00000547637	PRAG1	Q86YV5	1406 aa		34.39	■■■■□ 3.1
SMARCD1-204	ENST00000547637	FOXD1	Q16676	465 aa		34.39	■■■■□ 3.1
SMARCD1-204	ENST00000547637	RGL3	Q3MIN7	710 aa		34.38	■■■■□ 3.09
SMARCD1-204	ENST00000547637	ORAI2	Q96SN7	254 aa		34.38	■■■■□ 3.09
SMARCD1-204	ENST00000547637	MPHOSPH9	Q99550	1183 aa		34.37	■■■■□ 3.09
SMARCD1-204	ENST00000547637	CDK12	Q9NYV4	1490 aa	Predicted RBP	34.35	■■■■□ 3.09
SMARCD1-204	ENST00000547637	NGLY1	Q96IV0	654 aa		34.35	■■■■□ 3.09
SMARCD1-204	ENST00000547637	QTRT2	Q9H974	415 aa	Known RBP	34.35	■■■■□ 3.09
SMARCD1-204	ENST00000547637	ANKRD30B	Q9BXX2	1392 aa		34.35	■■■■□ 3.09
SMARCD1-204	ENST00000547637	SOS2	Q07890	1332 aa	Predicted RBP	34.34	■■■■□ 3.09
SMARCD1-204	ENST00000547637	UPF1	Q92900	1129 aa	Known RBP eCLIP	34.34	■■■■□ 3.09
SMARCD1-204	ENST00000547637	RBM6	P78332	1123 aa	Known RBP	34.32	■■■■□ 3.08

Retrieved 100 of 20,778 RNA–protein pairs in 137.8 ms