RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 RIMS2Q9UQ26 1411 aa34.51■■■■□ 3.11
CHD4-214ENST00000545942 CHGAP10645 457 aaKnown RBP34.51■■■■□ 3.11
CHD4-214ENST00000545942 KCNA6P17658 529 aa34.51■■■■□ 3.11
CHD4-214ENST00000545942 BCANQ96GW7 911 aa34.51■■■■□ 3.11
CHD4-214ENST00000545942 PPP1R15AO75807 674 aaPredicted RBP34.49■■■■□ 3.11
CHD4-214ENST00000545942 PLEKHG1Q9ULL1 1385 aa34.49■■■■□ 3.11
CHD4-214ENST00000545942 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.46■■■■□ 3.11
CHD4-214ENST00000545942 MYO5BQ9ULV0 1848 aa34.45■■■■□ 3.11
CHD4-214ENST00000545942 NAIPQ13075 1403 aa34.44■■■■□ 3.1
CHD4-214ENST00000545942 SENP3Q9H4L4 574 aaPredicted RBP34.42■■■■□ 3.1
CHD4-214ENST00000545942 TMEM94Q12767 1356 aa34.42■■■■□ 3.1
CHD4-214ENST00000545942 PROSER2Q86WR7 435 aaPredicted RBP34.39■■■■□ 3.1
CHD4-214ENST00000545942 XIRP1Q702N8 1843 aaKnown RBP34.39■■■■□ 3.1
CHD4-214ENST00000545942 NKTRP30414 1462 aaKnown RBP34.39■■■■□ 3.1
CHD4-214ENST00000545942 NWD1Q149M9 1564 aa34.38■■■■□ 3.09
CHD4-214ENST00000545942 ILDR2Q71H61 639 aa34.37■■■■□ 3.09
CHD4-214ENST00000545942 TBX22Q9Y458 520 aa34.35■■■■□ 3.09
CHD4-214ENST00000545942 HFM1A2PYH4 1435 aa34.34■■■■□ 3.09
CHD4-214ENST00000545942 NUTM2DQ5VT03 806 aaPredicted RBP34.34■■■■□ 3.09
CHD4-214ENST00000545942 SPHKAPQ2M3C7 1700 aa34.32■■■■□ 3.08
CHD4-214ENST00000545942 RBM33Q96EV2 1170 aaKnown RBP34.31■■■■□ 3.08
CHD4-214ENST00000545942 ADAMTS13Q76LX8 1427 aa34.28■■■■□ 3.08
CHD4-214ENST00000545942 DIP2AQ14689 1571 aa34.26■■■■□ 3.07
CHD4-214ENST00000545942 TRIM52Q96A61 297 aa34.25■■■■□ 3.07
CHD4-214ENST00000545942 FAM135BQ49AJ0 1406 aa34.24■■■■□ 3.07
CHD4-214ENST00000545942 CHD2O14647 1828 aaKnown RBP34.24■■■■□ 3.07
CHD4-214ENST00000545942 MED1Q15648 1581 aaPredicted RBP34.23■■■■□ 3.07
CHD4-214ENST00000545942 MSH6P52701 1360 aa34.23■■■■□ 3.07
CHD4-214ENST00000545942 PIK3R4Q99570 1358 aa34.23■■■■□ 3.07
CHD4-214ENST00000545942 ZNF326Q5BKZ1 582 aaKnown RBP34.23■■■■□ 3.07
CHD4-214ENST00000545942 TRPM2O94759 1503 aa34.22■■■■□ 3.07
CHD4-214ENST00000545942 CLTCL1P53675 1640 aa34.18■■■■□ 3.06
CHD4-214ENST00000545942 NCOA3Q9Y6Q9 1424 aa34.16■■■■□ 3.06
CHD4-214ENST00000545942 SLC4A1APQ9BWU0 796 aaKnown RBP34.16■■■■□ 3.06
CHD4-214ENST00000545942 SOCS7O14512 581 aa34.13■■■■□ 3.05
CHD4-214ENST00000545942 SETBP1Q9Y6X0 1596 aa34.12■■■■□ 3.05
CHD4-214ENST00000545942 C14orf37Q86TY3 774 aa34.1■■■■□ 3.05
CHD4-214ENST00000545942 SLAIN2Q9P270 581 aa34.1■■■■□ 3.05
CHD4-214ENST00000545942 AMOTL2Q9Y2J4 779 aa34.1■■■■□ 3.05
CHD4-214ENST00000545942 ROBO1Q9Y6N7 1651 aa34.1■■■■□ 3.05
CHD4-214ENST00000545942 PTPRUQ92729 1446 aa34.09■■■■□ 3.05
CHD4-214ENST00000545942 NRXN3Q9Y4C0 1643 aa34.08■■■■□ 3.05
CHD4-214ENST00000545942 NEXMIFQ5QGS0 1516 aa34.08■■■■□ 3.05
CHD4-214ENST00000545942 PHF23Q9BUL5 403 aaPredicted RBP34.05■■■■□ 3.04
CHD4-214ENST00000545942 KIF1BO60333 1816 aa34.04■■■■□ 3.04
CHD4-214ENST00000545942 C19orf44Q9H6X5 657 aa34.04■■■■□ 3.04
CHD4-214ENST00000545942 CADPS2Q86UW7 1296 aa34.01■■■■□ 3.03
CHD4-214ENST00000545942 METP08581 1390 aa34■■■■□ 3.03
CHD4-214ENST00000545942 ATF3P18847 181 aa33.99■■■■□ 3.03
CHD4-214ENST00000545942 VGFO15240 615 aaPredicted RBP33.98■■■■□ 3.03
CHD4-214ENST00000545942 XRN1Q8IZH2 1706 aaKnown RBP33.98■■■■□ 3.03
CHD4-214ENST00000545942 RPGRIP1LQ68CZ1 1315 aa33.96■■■■□ 3.03
CHD4-214ENST00000545942 FOXD1Q16676 465 aa33.96■■■■□ 3.03
CHD4-214ENST00000545942 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.95■■■■□ 3.02
CHD4-214ENST00000545942 MPHOSPH9Q99550 1183 aa33.92■■■■□ 3.02
CHD4-214ENST00000545942 DCCP43146 1447 aa33.91■■■■□ 3.02
CHD4-214ENST00000545942 ACIN1Q9UKV3 1341 aaKnown RBP33.89■■■■□ 3.02
CHD4-214ENST00000545942 CCDC144AA2RUR9 1427 aa33.89■■■■□ 3.02
CHD4-214ENST00000545942 PHLPP1O60346 1717 aa33.88■■■■□ 3.01
CHD4-214ENST00000545942 SETD5Q9C0A6 1442 aa33.84■■■■□ 3.01
CHD4-214ENST00000545942 JCADQ9P266 1359 aa33.84■■■■□ 3.01
CHD4-214ENST00000545942 ADGRL3Q9HAR2 1447 aa33.8■■■■□ 3
CHD4-214ENST00000545942 PPLO60437 1756 aa33.8■■■■□ 3
CHD4-214ENST00000545942 BRINP3Q76B58 766 aa33.79■■■■□ 3
CHD4-214ENST00000545942 COL16A1Q07092 1604 aaPredicted RBP33.79■■■■□ 3
CHD4-214ENST00000545942 RGS17Q9UGC6 210 aaPredicted RBP33.79■■■■□ 3
CHD4-214ENST00000545942 AHDC1Q5TGY3 1603 aaPredicted RBP33.78■■■■□ 3
CHD4-214ENST00000545942 SETD1AO15047 1707 aaKnown RBP33.78■■■■□ 3
CHD4-214ENST00000545942 PTCH1Q13635 1447 aa33.78■■■■□ 3
CHD4-214ENST00000545942 SPATA31E1Q6ZUB1 1445 aa33.78■■■■□ 3
CHD4-214ENST00000545942 MST1RQ04912 1400 aa33.77■■■■□ 3
CHD4-214ENST00000545942 RGL3Q3MIN7 710 aa33.77■■■■□ 3
CHD4-214ENST00000545942 PRAG1Q86YV5 1406 aa33.73■■■□□ 2.99
CHD4-214ENST00000545942 ANKRD30BQ9BXX2 1392 aa33.73■■■□□ 2.99
CHD4-214ENST00000545942 ROBO2Q9HCK4 1378 aa33.73■■■□□ 2.99
CHD4-214ENST00000545942 ADGRF5Q8IZF2 1346 aa33.71■■■□□ 2.99
CHD4-214ENST00000545942 RAB3GAP2Q9H2M9 1393 aa33.71■■■□□ 2.99
CHD4-214ENST00000545942 ASXL1Q8IXJ9 1541 aa33.71■■■□□ 2.99
CHD4-214ENST00000545942 NALCNQ8IZF0 1738 aa33.71■■■□□ 2.99
CHD4-214ENST00000545942 SPATA31A6Q5VVP1 1343 aa33.69■■■□□ 2.98
CHD4-214ENST00000545942 IFT172Q9UG01 1749 aa33.62■■■□□ 2.97
CHD4-214ENST00000545942 POTEAQ6S8J7 498 aa33.61■■■□□ 2.97
CHD4-214ENST00000545942 C1orf167Q5SNV9 1468 aa33.6■■■□□ 2.97
CHD4-214ENST00000545942 SHPRHQ149N8 1683 aa33.6■■■□□ 2.97
CHD4-214ENST00000545942 PIK3C2GO75747 1445 aa33.6■■■□□ 2.97
CHD4-214ENST00000545942 LRP6O75581 1613 aa33.58■■■□□ 2.97
CHD4-214ENST00000545942 NHSL1Q5SYE7 1610 aa33.58■■■□□ 2.97
CHD4-214ENST00000545942 MEX3CQ5U5Q3 659 aaKnown RBP33.55■■■□□ 2.96
CHD4-214ENST00000545942 LRRC59Q96AG4 307 aaKnown RBP33.55■■■□□ 2.96
CHD4-214ENST00000545942 LRPPRCP42704 1394 aaKnown RBP33.55■■■□□ 2.96
CHD4-214ENST00000545942 STK26Q9P289 416 aa33.54■■■□□ 2.96
CHD4-214ENST00000545942 TECPR2O15040 1411 aa33.54■■■□□ 2.96
CHD4-214ENST00000545942 DDX17Q92841 729 aaKnown RBP33.53■■■□□ 2.96
CHD4-214ENST00000545942 TMEM132EQ6IEE7 984 aa33.52■■■□□ 2.96
CHD4-214ENST00000545942 ABCC11Q96J66 1382 aa33.51■■■□□ 2.96
CHD4-214ENST00000545942 HRCP23327 699 aa33.5■■■□□ 2.95
CHD4-214ENST00000545942 ORAI2Q96SN7 254 aa33.5■■■□□ 2.95
CHD4-214ENST00000545942 MYOM2P54296 1465 aa33.49■■■□□ 2.95
CHD4-214ENST00000545942 NRXN1Q9ULB1 1477 aa33.48■■■□□ 2.95
CHD4-214ENST00000545942 NUTM2BA6NNL0 878 aaPredicted RBP33.48■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms