RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 NRXN1Q9ULB1 1477 aa22.99■■□□□ 1.27
PRPF40A-212ENST00000545856 ARHGAP23Q9P227 1491 aa22.98■■□□□ 1.27
PRPF40A-212ENST00000545856 LAMC1P11047 1609 aa22.98■■□□□ 1.27
PRPF40A-212ENST00000545856 PPP1R15AO75807 674 aaPredicted RBP22.97■■□□□ 1.27
PRPF40A-212ENST00000545856 THEMISQ8N1K5 641 aaPredicted RBP22.97■■□□□ 1.27
PRPF40A-212ENST00000545856 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.97■■□□□ 1.27
PRPF40A-212ENST00000545856 TMEM2Q9UHN6 1383 aa22.96■■□□□ 1.27
PRPF40A-212ENST00000545856 CHGAP10645 457 aaKnown RBP22.95■■□□□ 1.26
PRPF40A-212ENST00000545856 ZNF326Q5BKZ1 582 aaKnown RBP22.95■■□□□ 1.26
PRPF40A-212ENST00000545856 VGFO15240 615 aaPredicted RBP22.94■■□□□ 1.26
PRPF40A-212ENST00000545856 RGL3Q3MIN7 710 aa22.94■■□□□ 1.26
PRPF40A-212ENST00000545856 PRAG1Q86YV5 1406 aa22.94■■□□□ 1.26
PRPF40A-212ENST00000545856 RIMS2Q9UQ26 1411 aa22.93■■□□□ 1.26
PRPF40A-212ENST00000545856 DCAF11Q8TEB1 546 aa22.93■■□□□ 1.26
PRPF40A-212ENST00000545856 TRPM1Q7Z4N2 1603 aa22.91■■□□□ 1.26
PRPF40A-212ENST00000545856 RALGAPBQ86X10 1494 aa22.9■■□□□ 1.26
PRPF40A-212ENST00000545856 PIK3C2GO75747 1445 aa22.9■■□□□ 1.26
PRPF40A-212ENST00000545856 POLR1AO95602 1720 aaPredicted RBP22.9■■□□□ 1.26
PRPF40A-212ENST00000545856 SETBP1Q9Y6X0 1596 aa22.88■■□□□ 1.25
PRPF40A-212ENST00000545856 PLPPR3Q6T4P5 718 aa22.88■■□□□ 1.25
PRPF40A-212ENST00000545856 SCAF11Q99590 1463 aaKnown RBP22.86■■□□□ 1.25
PRPF40A-212ENST00000545856 EID1Q9Y6B2 187 aa22.86■■□□□ 1.25
PRPF40A-212ENST00000545856 DIP2AQ14689 1571 aa22.85■■□□□ 1.25
PRPF40A-212ENST00000545856 PLEKHG1Q9ULL1 1385 aa22.84■■□□□ 1.25
PRPF40A-212ENST00000545856 LMTK3Q96Q04 1460 aa22.84■■□□□ 1.25
PRPF40A-212ENST00000545856 GPRASP1Q5JY77 1395 aa22.83■■□□□ 1.25
PRPF40A-212ENST00000545856 MED14O60244 1454 aa22.81■■□□□ 1.24
PRPF40A-212ENST00000545856 KDM2AQ9Y2K7 1162 aa22.8■■□□□ 1.24
PRPF40A-212ENST00000545856 NRXN3Q9Y4C0 1643 aa22.8■■□□□ 1.24
PRPF40A-212ENST00000545856 SETD1AO15047 1707 aaKnown RBP22.8■■□□□ 1.24
PRPF40A-212ENST00000545856 ADGRF5Q8IZF2 1346 aa22.79■■□□□ 1.24
PRPF40A-212ENST00000545856 IQGAP1P46940 1657 aa22.78■■□□□ 1.24
PRPF40A-212ENST00000545856 ANKLE2Q86XL3 938 aa22.78■■□□□ 1.24
PRPF40A-212ENST00000545856 NBPF8Q3BBV2 869 aa22.77■■□□□ 1.24
PRPF40A-212ENST00000545856 ALKQ9UM73 1620 aa22.77■■□□□ 1.23
PRPF40A-212ENST00000545856 TXNDC2Q86VQ3 553 aa22.76■■□□□ 1.23
PRPF40A-212ENST00000545856 C14orf93Q9H972 538 aaKnown RBP22.76■■□□□ 1.23
PRPF40A-212ENST00000545856 ADGRB1O14514 1584 aa22.74■■□□□ 1.23
PRPF40A-212ENST00000545856 ROCK2O75116 1388 aaKnown RBP22.74■■□□□ 1.23
PRPF40A-212ENST00000545856 LTKP29376 864 aa22.72■■□□□ 1.23
PRPF40A-212ENST00000545856 PIK3R4Q99570 1358 aa22.72■■□□□ 1.23
PRPF40A-212ENST00000545856 KNDC1Q76NI1 1749 aa22.71■■□□□ 1.23
PRPF40A-212ENST00000545856 ADAMTS13Q76LX8 1427 aa22.7■■□□□ 1.22
PRPF40A-212ENST00000545856 NPHP4O75161 1426 aaPredicted RBP22.69■■□□□ 1.22
PRPF40A-212ENST00000545856 EIF3AQ14152 1382 aaKnown RBP22.68■■□□□ 1.22
PRPF40A-212ENST00000545856 TBX22Q9Y458 520 aa22.68■■□□□ 1.22
PRPF40A-212ENST00000545856 ASXL1Q8IXJ9 1541 aa22.67■■□□□ 1.22
PRPF40A-212ENST00000545856 CARD11Q9BXL7 1154 aa22.66■■□□□ 1.22
PRPF40A-212ENST00000545856 DLC1Q96QB1 1528 aa22.66■■□□□ 1.22
PRPF40A-212ENST00000545856 STRCQ7RTU9 1775 aa22.66■■□□□ 1.22
PRPF40A-212ENST00000545856 CFAP70Q5T0N1 1121 aa22.65■■□□□ 1.22
PRPF40A-212ENST00000545856 NUTM2DQ5VT03 806 aaPredicted RBP22.64■■□□□ 1.22
PRPF40A-212ENST00000545856 TECPR2O15040 1411 aa22.63■■□□□ 1.21
PRPF40A-212ENST00000545856 SLC24A1O60721 1099 aa22.63■■□□□ 1.21
PRPF40A-212ENST00000545856 ARHGEF28Q8N1W1 1705 aaKnown RBP22.62■■□□□ 1.21
PRPF40A-212ENST00000545856 USP47Q96K76 1375 aa22.62■■□□□ 1.21
PRPF40A-212ENST00000545856 CHD2O14647 1828 aaKnown RBP22.62■■□□□ 1.21
PRPF40A-212ENST00000545856 YTHDC2Q9H6S0 1430 aaKnown RBP22.62■■□□□ 1.21
PRPF40A-212ENST00000545856 EIF4G2P78344 907 aaKnown RBP eCLIP22.62■■□□□ 1.21
PRPF40A-212ENST00000545856 CPS1P31327 1500 aa22.61■■□□□ 1.21
PRPF40A-212ENST00000545856 LRPPRCP42704 1394 aaKnown RBP22.61■■□□□ 1.21
PRPF40A-212ENST00000545856 ABCC11Q96J66 1382 aa22.61■■□□□ 1.21
PRPF40A-212ENST00000545856 XRN1Q8IZH2 1706 aaKnown RBP22.6■■□□□ 1.21
PRPF40A-212ENST00000545856 NBPF1Q3BBV0 1214 aa22.6■■□□□ 1.21
PRPF40A-212ENST00000545856 SIRT1Q96EB6 747 aa22.59■■□□□ 1.21
PRPF40A-212ENST00000545856 BCANQ96GW7 911 aa22.59■■□□□ 1.21
PRPF40A-212ENST00000545856 NWD1Q149M9 1564 aa22.59■■□□□ 1.21
PRPF40A-212ENST00000545856 SBNO2Q9Y2G9 1366 aa22.58■■□□□ 1.21
PRPF40A-212ENST00000545856 DMRT2Q9Y5R5 561 aa22.58■■□□□ 1.21
PRPF40A-212ENST00000545856 PTCH1Q13635 1447 aa22.58■■□□□ 1.2
PRPF40A-212ENST00000545856 FAM135BQ49AJ0 1406 aa22.57■■□□□ 1.2
PRPF40A-212ENST00000545856 METP08581 1390 aa22.55■■□□□ 1.2
PRPF40A-212ENST00000545856 HSPA2P54652 639 aa22.54■■□□□ 1.2
PRPF40A-212ENST00000545856 NCKAP5LQ9HCH0 1330 aa22.54■■□□□ 1.2
PRPF40A-212ENST00000545856 NKTRP30414 1462 aaKnown RBP22.52■■□□□ 1.2
PRPF40A-212ENST00000545856 QRICH2Q9H0J4 1663 aa22.52■■□□□ 1.2
PRPF40A-212ENST00000545856 SLC26A8Q96RN1 970 aa22.5■■□□□ 1.19
PRPF40A-212ENST00000545856 TMEM132EQ6IEE7 984 aa22.5■■□□□ 1.19
PRPF40A-212ENST00000545856 AEBP2Q6ZN18 517 aaPredicted RBP22.49■■□□□ 1.19
PRPF40A-212ENST00000545856 CENPJQ9HC77 1338 aaPredicted RBP22.49■■□□□ 1.19
PRPF40A-212ENST00000545856 HSPA5P11021 654 aaKnown RBP22.48■■□□□ 1.19
PRPF40A-212ENST00000545856 PTPRUQ92729 1446 aa22.47■■□□□ 1.19
PRPF40A-212ENST00000545856 ADGRB2O60241 1585 aa22.46■■□□□ 1.19
PRPF40A-212ENST00000545856 KCNA6P17658 529 aa22.46■■□□□ 1.19
PRPF40A-212ENST00000545856 TRAK1Q9UPV9 953 aa22.45■■□□□ 1.18
PRPF40A-212ENST00000545856 ST20-MTHFSA0A0A6YYL1 179 aa22.44■■□□□ 1.18
PRPF40A-212ENST00000545856 NCOA3Q9Y6Q9 1424 aa22.43■■□□□ 1.18
PRPF40A-212ENST00000545856 AMOTL2Q9Y2J4 779 aa22.43■■□□□ 1.18
PRPF40A-212ENST00000545856 ZNF316A6NFI3 1004 aaPredicted RBP22.41■■□□□ 1.18
PRPF40A-212ENST00000545856 CDCA8Q53HL2 280 aa22.41■■□□□ 1.18
PRPF40A-212ENST00000545856 PUS7Q96PZ0 661 aaKnown RBP22.4■■□□□ 1.18
PRPF40A-212ENST00000545856 TESK2Q96S53 571 aa22.4■■□□□ 1.18
PRPF40A-212ENST00000545856 POGKQ9P215 609 aa22.39■■□□□ 1.18
PRPF40A-212ENST00000545856 STK26Q9P289 416 aa22.39■■□□□ 1.18
PRPF40A-212ENST00000545856 ROBO2Q9HCK4 1378 aa22.39■■□□□ 1.17
PRPF40A-212ENST00000545856 TMF1P82094 1093 aa22.38■■□□□ 1.17
PRPF40A-212ENST00000545856 PRAM1Q96QH2 718 aa22.38■■□□□ 1.17
PRPF40A-212ENST00000545856 STRCP1A6NGW2 1772 aa22.37■■□□□ 1.17
PRPF40A-212ENST00000545856 CDC42BPGQ6DT37 1551 aa22.35■■□□□ 1.17
PRPF40A-212ENST00000545856 SENP3Q9H4L4 574 aaPredicted RBP22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms