RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 WASHC2CQ9Y4E1 1318 aa19.69■□□□□ 0.74
USP28-214ENST00000545540 CHD1O14646 1710 aa19.69■□□□□ 0.74
USP28-214ENST00000545540 BLMP54132 1417 aaPredicted RBP19.69■□□□□ 0.74
USP28-214ENST00000545540 PLCH2O75038 1416 aa19.68■□□□□ 0.74
USP28-214ENST00000545540 SCAPERQ9BY12 1400 aa19.68■□□□□ 0.74
USP28-214ENST00000545540 BCL2L13Q9BXK5 485 aa19.68■□□□□ 0.74
USP28-214ENST00000545540 FRAT1Q92837 279 aaPredicted RBP19.67■□□□□ 0.74
USP28-214ENST00000545540 MYO5CQ9NQX4 1742 aa19.67■□□□□ 0.74
USP28-214ENST00000545540 GGT6Q6P531 493 aa19.67■□□□□ 0.74
USP28-214ENST00000545540 UGGT1Q9NYU2 1555 aa19.67■□□□□ 0.74
USP28-214ENST00000545540 SLC12A5Q9H2X9 1139 aa19.66■□□□□ 0.74
USP28-214ENST00000545540 DUOX2Q9NRD8 1548 aa19.65■□□□□ 0.74
USP28-214ENST00000545540 SLFN5Q08AF3 891 aa19.65■□□□□ 0.74
USP28-214ENST00000545540 PANK1Q8TE04 598 aa19.64■□□□□ 0.73
USP28-214ENST00000545540 UNC13BO14795 1591 aa19.64■□□□□ 0.73
USP28-214ENST00000545540 ABCC2Q92887 1545 aa19.63■□□□□ 0.73
USP28-214ENST00000545540 CANXP27824 592 aaKnown RBP19.63■□□□□ 0.73
USP28-214ENST00000545540 TNNQ9UQP3 1299 aa19.63■□□□□ 0.73
USP28-214ENST00000545540 COG6Q9Y2V7 657 aa19.62■□□□□ 0.73
USP28-214ENST00000545540 ATP10AO60312 1499 aa19.62■□□□□ 0.73
USP28-214ENST00000545540 MS4A1P11836 297 aa19.62■□□□□ 0.73
USP28-214ENST00000545540 CDCA8Q53HL2 280 aa19.62■□□□□ 0.73
USP28-214ENST00000545540 IQGAP3Q86VI3 1631 aa19.62■□□□□ 0.73
USP28-214ENST00000545540 IL27Q8NEV9 243 aa19.61■□□□□ 0.73
USP28-214ENST00000545540 IGHDP01880 384 aa19.6■□□□□ 0.73
USP28-214ENST00000545540 CLUAP1Q96AJ1 413 aa19.6■□□□□ 0.73
USP28-214ENST00000545540 ZMYM4Q5VZL5 1548 aa19.6■□□□□ 0.73
USP28-214ENST00000545540 MAST1Q9Y2H9 1570 aa19.6■□□□□ 0.73
USP28-214ENST00000545540 ZNF521Q96K83 1311 aa19.59■□□□□ 0.73
USP28-214ENST00000545540 KDM2BQ8NHM5 1336 aa19.59■□□□□ 0.73
USP28-214ENST00000545540 CFAP65Q6ZU64 1925 aaKnown RBP19.58■□□□□ 0.73
USP28-214ENST00000545540 DAXXQ9UER7 740 aaPredicted RBP19.58■□□□□ 0.73
USP28-214ENST00000545540 SCAF11Q99590 1463 aaKnown RBP19.58■□□□□ 0.73
USP28-214ENST00000545540 MORC1Q86VD1 984 aa19.57■□□□□ 0.72
USP28-214ENST00000545540 CENPQQ7L2Z9 268 aaPredicted RBP19.56■□□□□ 0.72
USP28-214ENST00000545540 C8orf34Q49A92 452 aa19.56■□□□□ 0.72
USP28-214ENST00000545540 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.56■□□□□ 0.72
USP28-214ENST00000545540 KANK1Q14678 1352 aa19.55■□□□□ 0.72
USP28-214ENST00000545540 STK26Q9P289 416 aa19.54■□□□□ 0.72
USP28-214ENST00000545540 PLXNC1O60486 1568 aa19.53■□□□□ 0.72
USP28-214ENST00000545540 CLTCL1P53675 1640 aa19.53■□□□□ 0.72
USP28-214ENST00000545540 ZCCHC11Q5TAX3 1644 aaKnown RBP19.53■□□□□ 0.72
USP28-214ENST00000545540 EIF2AK4Q9P2K8 1649 aaKnown RBP19.53■□□□□ 0.72
USP28-214ENST00000545540 WWC1Q8IX03 1113 aa19.53■□□□□ 0.72
USP28-214ENST00000545540 ASXL1Q8IXJ9 1541 aa19.52■□□□□ 0.72
USP28-214ENST00000545540 SEC24BO95487 1268 aa19.52■□□□□ 0.72
USP28-214ENST00000545540 ABCC1P33527 1531 aa19.52■□□□□ 0.71
USP28-214ENST00000545540 MADDQ8WXG6 1647 aa19.52■□□□□ 0.71
USP28-214ENST00000545540 FAM161AQ3B820 660 aa19.51■□□□□ 0.71
USP28-214ENST00000545540 MTHFSP49914 203 aa19.51■□□□□ 0.71
USP28-214ENST00000545540 FANCAO15360 1455 aa19.5■□□□□ 0.71
USP28-214ENST00000545540 TCP11L2Q8N4U5 519 aa19.5■□□□□ 0.71
USP28-214ENST00000545540 EIF3AQ14152 1382 aaKnown RBP19.49■□□□□ 0.71
USP28-214ENST00000545540 E9PSI1 815 aa19.48■□□□□ 0.71
USP28-214ENST00000545540 NFKBIBQ15653 356 aa19.48■□□□□ 0.71
USP28-214ENST00000545540 CABP2Q9NPB3 220 aa19.48■□□□□ 0.71
USP28-214ENST00000545540 CENPJQ9HC77 1338 aaPredicted RBP19.48■□□□□ 0.71
USP28-214ENST00000545540 NOS1P29475 1434 aa19.48■□□□□ 0.71
USP28-214ENST00000545540 RLBP1P12271 317 aa19.48■□□□□ 0.71
USP28-214ENST00000545540 TRMT2AQ8IZ69 625 aaKnown RBP19.47■□□□□ 0.71
USP28-214ENST00000545540 ERVK-7P63135 1459 aa19.47■□□□□ 0.71
USP28-214ENST00000545540 NSD3Q9BZ95 1437 aa19.46■□□□□ 0.71
USP28-214ENST00000545540 RAPGEF3O95398 923 aa19.45■□□□□ 0.7
USP28-214ENST00000545540 U2AF1L5P0DN76 240 aaPredicted RBP19.45■□□□□ 0.7
USP28-214ENST00000545540 U2AF1Q01081 240 aaKnown RBP eCLIP19.45■□□□□ 0.7
USP28-214ENST00000545540 PTPRTO14522 1441 aa19.45■□□□□ 0.7
USP28-214ENST00000545540 ADGRL1O94910 1474 aa19.45■□□□□ 0.7
USP28-214ENST00000545540 FRAT2O75474 233 aaPredicted RBP19.44■□□□□ 0.7
USP28-214ENST00000545540 DDRGK1Q96HY6 314 aa19.44■□□□□ 0.7
USP28-214ENST00000545540 ZFYVE16Q7Z3T8 1539 aa19.44■□□□□ 0.7
USP28-214ENST00000545540 TSR2Q969E8 191 aaKnown RBP19.44■□□□□ 0.7
USP28-214ENST00000545540 TRPM2O94759 1503 aa19.44■□□□□ 0.7
USP28-214ENST00000545540 NKTRP30414 1462 aaKnown RBP19.44■□□□□ 0.7
USP28-214ENST00000545540 U2SURPO15042 1029 aaKnown RBP19.44■□□□□ 0.7
USP28-214ENST00000545540 FBLN1P23142 703 aa19.44■□□□□ 0.7
USP28-214ENST00000545540 SPRYD3Q8NCJ5 442 aa19.44■□□□□ 0.7
USP28-214ENST00000545540 LAMC1P11047 1609 aa19.43■□□□□ 0.7
USP28-214ENST00000545540 RNF17Q9BXT8 1623 aaKnown RBP19.43■□□□□ 0.7
USP28-214ENST00000545540 PPM1GO15355 546 aaPredicted RBP19.43■□□□□ 0.7
USP28-214ENST00000545540 PIK3C2GO75747 1445 aa19.43■□□□□ 0.7
USP28-214ENST00000545540 SHROOM2Q13796 1616 aa19.42■□□□□ 0.7
USP28-214ENST00000545540 SLKQ9H2G2 1235 aaPredicted RBP19.42■□□□□ 0.7
USP28-214ENST00000545540 BRPF3Q9ULD4 1205 aa19.42■□□□□ 0.7
USP28-214ENST00000545540 PCDHB15Q9Y5E8 787 aa19.42■□□□□ 0.7
USP28-214ENST00000545540 IQGAP1P46940 1657 aa19.41■□□□□ 0.7
USP28-214ENST00000545540 GGNBP2Q9H3C7 697 aa19.41■□□□□ 0.7
USP28-214ENST00000545540 ARXQ96QS3 562 aa19.39■□□□□ 0.7
USP28-214ENST00000545540 ATP7AQ04656 1500 aa19.39■□□□□ 0.7
USP28-214ENST00000545540 SPHKAPQ2M3C7 1700 aa19.39■□□□□ 0.69
USP28-214ENST00000545540 RARSP54136 660 aaKnown RBP19.38■□□□□ 0.69
USP28-214ENST00000545540 SYNMO15061 1565 aa19.38■□□□□ 0.69
USP28-214ENST00000545540 SRPK2P78362 688 aaKnown RBP19.37■□□□□ 0.69
USP28-214ENST00000545540 RUNDC1Q96C34 613 aa19.37■□□□□ 0.69
USP28-214ENST00000545540 RTEL1-TNFRSF6BF6WH68 1400 aa19.37■□□□□ 0.69
USP28-214ENST00000545540 INSRP06213 1382 aa19.37■□□□□ 0.69
USP28-214ENST00000545540 MYOM1P52179 1685 aa19.37■□□□□ 0.69
USP28-214ENST00000545540 MINK1Q8N4C8 1332 aaPredicted RBP19.35■□□□□ 0.69
USP28-214ENST00000545540 NPM1P06748 294 aaKnown RBP eCLIP19.35■□□□□ 0.69
USP28-214ENST00000545540 C14orf93Q9H972 538 aaKnown RBP19.34■□□□□ 0.69
USP28-214ENST00000545540 ASXL2Q76L83 1435 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms