RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 SETD1AO15047 1707 aaKnown RBP20.22■□□□□ 0.83
USP28-212ENST00000544750 ZFYVE9O95405 1425 aa20.21■□□□□ 0.83
USP28-212ENST00000544750 GCC2Q8IWJ2 1684 aa20.2■□□□□ 0.82
USP28-212ENST00000544750 ADGRL2O95490 1459 aa20.2■□□□□ 0.82
USP28-212ENST00000544750 SLC52A1Q9NWF4 448 aa20.2■□□□□ 0.82
USP28-212ENST00000544750 CHIC2Q9UKJ5 165 aa20.19■□□□□ 0.82
USP28-212ENST00000544750 COL16A1Q07092 1604 aaPredicted RBP20.19■□□□□ 0.82
USP28-212ENST00000544750 RPRD2Q5VT52 1461 aaKnown RBP20.18■□□□□ 0.82
USP28-212ENST00000544750 MSH6P52701 1360 aa20.18■□□□□ 0.82
USP28-212ENST00000544750 TMEM131LA2VDJ0 1609 aa20.17■□□□□ 0.82
USP28-212ENST00000544750 SLAIN2Q9P270 581 aa20.16■□□□□ 0.82
USP28-212ENST00000544750 PLEKHG1Q9ULL1 1385 aa20.16■□□□□ 0.82
USP28-212ENST00000544750 JCADQ9P266 1359 aa20.15■□□□□ 0.82
USP28-212ENST00000544750 RIMS2Q9UQ26 1411 aa20.12■□□□□ 0.81
USP28-212ENST00000544750 NCOA3Q9Y6Q9 1424 aa20.12■□□□□ 0.81
USP28-212ENST00000544750 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.11■□□□□ 0.81
USP28-212ENST00000544750 LRP6O75581 1613 aa20.1■□□□□ 0.81
USP28-212ENST00000544750 ANKRD50Q9ULJ7 1429 aa20.1■□□□□ 0.81
USP28-212ENST00000544750 TBX22Q9Y458 520 aa20.09■□□□□ 0.81
USP28-212ENST00000544750 SHPRHQ149N8 1683 aa20.09■□□□□ 0.81
USP28-212ENST00000544750 ADAMTS13Q76LX8 1427 aa20.09■□□□□ 0.81
USP28-212ENST00000544750 AHDC1Q5TGY3 1603 aaPredicted RBP20.09■□□□□ 0.81
USP28-212ENST00000544750 UNC13BO14795 1591 aa20.08■□□□□ 0.81
USP28-212ENST00000544750 E9PCH4 1651 aa20.08■□□□□ 0.81
USP28-212ENST00000544750 APLP2Q06481 763 aa20.08■□□□□ 0.81
USP28-212ENST00000544750 BCANQ96GW7 911 aa20.08■□□□□ 0.81
USP28-212ENST00000544750 DIP2AQ14689 1571 aa20.07■□□□□ 0.8
USP28-212ENST00000544750 SPATA31A6Q5VVP1 1343 aa20.04■□□□□ 0.8
USP28-212ENST00000544750 HDGFP51858 240 aaKnown RBP20.04■□□□□ 0.8
USP28-212ENST00000544750 PPP1R15AO75807 674 aaPredicted RBP20.03■□□□□ 0.8
USP28-212ENST00000544750 PIK3R4Q99570 1358 aa20.03■□□□□ 0.8
USP28-212ENST00000544750 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.01■□□□□ 0.79
USP28-212ENST00000544750 IQGAP3Q86VI3 1631 aa20.01■□□□□ 0.79
USP28-212ENST00000544750 C19orf44Q9H6X5 657 aa20■□□□□ 0.79
USP28-212ENST00000544750 CADPS2Q86UW7 1296 aa19.99■□□□□ 0.79
USP28-212ENST00000544750 PTPRUQ92729 1446 aa19.99■□□□□ 0.79
USP28-212ENST00000544750 TRPM2O94759 1503 aa19.98■□□□□ 0.79
USP28-212ENST00000544750 UPF1Q92900 1129 aaKnown RBP eCLIP19.98■□□□□ 0.79
USP28-212ENST00000544750 NRXN3Q9Y4C0 1643 aa19.98■□□□□ 0.79
USP28-212ENST00000544750 XRN1Q8IZH2 1706 aaKnown RBP19.97■□□□□ 0.79
USP28-212ENST00000544750 FAM50AQ14320 339 aaKnown RBP19.97■□□□□ 0.79
USP28-212ENST00000544750 ZNF772Q68DY9 489 aaPredicted RBP19.97■□□□□ 0.79
USP28-212ENST00000544750 NUTM2DQ5VT03 806 aaPredicted RBP19.96■□□□□ 0.79
USP28-212ENST00000544750 NHSL1Q5SYE7 1610 aa19.95■□□□□ 0.78
USP28-212ENST00000544750 DCCP43146 1447 aa19.94■□□□□ 0.78
USP28-212ENST00000544750 CHGAP10645 457 aaKnown RBP19.94■□□□□ 0.78
USP28-212ENST00000544750 ATF3P18847 181 aa19.94■□□□□ 0.78
USP28-212ENST00000544750 BRINP3Q76B58 766 aa19.94■□□□□ 0.78
USP28-212ENST00000544750 C14orf37Q86TY3 774 aa19.94■□□□□ 0.78
USP28-212ENST00000544750 CDK12Q9NYV4 1490 aaPredicted RBP19.92■□□□□ 0.78
USP28-212ENST00000544750 MEX3CQ5U5Q3 659 aaKnown RBP19.92■□□□□ 0.78
USP28-212ENST00000544750 AMOTL2Q9Y2J4 779 aa19.92■□□□□ 0.78
USP28-212ENST00000544750 ASXL1Q8IXJ9 1541 aa19.92■□□□□ 0.78
USP28-212ENST00000544750 SETBP1Q9Y6X0 1596 aa19.91■□□□□ 0.78
USP28-212ENST00000544750 TRIM52Q96A61 297 aa19.91■□□□□ 0.78
USP28-212ENST00000544750 ROCK1Q13464 1354 aa19.91■□□□□ 0.78
USP28-212ENST00000544750 SETD5Q9C0A6 1442 aa19.91■□□□□ 0.78
USP28-212ENST00000544750 MST1RQ04912 1400 aa19.89■□□□□ 0.77
USP28-212ENST00000544750 SPHKAPQ2M3C7 1700 aa19.89■□□□□ 0.77
USP28-212ENST00000544750 RXRBP28702 533 aa19.87■□□□□ 0.77
USP28-212ENST00000544750 NALCNQ8IZF0 1738 aa19.85■□□□□ 0.77
USP28-212ENST00000544750 NUP155O75694 1391 aa19.84■□□□□ 0.77
USP28-212ENST00000544750 AFF2P51816 1311 aa19.84■□□□□ 0.77
USP28-212ENST00000544750 NUTM2BA6NNL0 878 aaPredicted RBP19.83■□□□□ 0.77
USP28-212ENST00000544750 NUTM2EB1AL46 878 aaPredicted RBP19.83■□□□□ 0.77
USP28-212ENST00000544750 NUTM2AQ8IVF1 878 aaPredicted RBP19.83■□□□□ 0.77
USP28-212ENST00000544750 LAMC1P11047 1609 aa19.83■□□□□ 0.76
USP28-212ENST00000544750 METP08581 1390 aa19.83■□□□□ 0.76
USP28-212ENST00000544750 ADGRL3Q9HAR2 1447 aa19.81■□□□□ 0.76
USP28-212ENST00000544750 PNPLA6Q8IY17 1366 aa19.81■□□□□ 0.76
USP28-212ENST00000544750 LRRC59Q96AG4 307 aaKnown RBP19.8■□□□□ 0.76
USP28-212ENST00000544750 NEXMIFQ5QGS0 1516 aa19.8■□□□□ 0.76
USP28-212ENST00000544750 RGS12O14924 1447 aa19.79■□□□□ 0.76
USP28-212ENST00000544750 CLTCL1P53675 1640 aa19.78■□□□□ 0.76
USP28-212ENST00000544750 DDX17Q92841 729 aaKnown RBP19.77■□□□□ 0.76
USP28-212ENST00000544750 KIF1BO60333 1816 aa19.76■□□□□ 0.75
USP28-212ENST00000544750 RBM6P78332 1123 aaKnown RBP19.75■□□□□ 0.75
USP28-212ENST00000544750 QTRT2Q9H974 415 aaKnown RBP19.75■□□□□ 0.75
USP28-212ENST00000544750 C8orf37Q96NL8 207 aa19.74■□□□□ 0.75
USP28-212ENST00000544750 C1orf167Q5SNV9 1468 aa19.73■□□□□ 0.75
USP28-212ENST00000544750 ZNF326Q5BKZ1 582 aaKnown RBP19.71■□□□□ 0.75
USP28-212ENST00000544750 PTCH1Q13635 1447 aa19.7■□□□□ 0.74
USP28-212ENST00000544750 SOS2Q07890 1332 aaPredicted RBP19.7■□□□□ 0.74
USP28-212ENST00000544750 COL22A1Q8NFW1 1626 aaPredicted RBP19.69■□□□□ 0.74
USP28-212ENST00000544750 PRAG1Q86YV5 1406 aa19.69■□□□□ 0.74
USP28-212ENST00000544750 SRCAPQ6ZRS2 3230 aa19.67■□□□□ 0.74
USP28-212ENST00000544750 MARF1Q9Y4F3 1742 aaKnown RBP19.66■□□□□ 0.74
USP28-212ENST00000544750 ITGAEP38570 1179 aa19.66■□□□□ 0.74
USP28-212ENST00000544750 ROBO2Q9HCK4 1378 aa19.66■□□□□ 0.74
USP28-212ENST00000544750 ADAMTS2O95450 1211 aa19.65■□□□□ 0.74
USP28-212ENST00000544750 NGLY1Q96IV0 654 aa19.65■□□□□ 0.74
USP28-212ENST00000544750 PPLO60437 1756 aa19.65■□□□□ 0.74
USP28-212ENST00000544750 ORAI2Q96SN7 254 aa19.64■□□□□ 0.73
USP28-212ENST00000544750 FNBP4Q8N3X1 1017 aaPredicted RBP19.63■□□□□ 0.73
USP28-212ENST00000544750 EP400Q96L91 3159 aa19.63■□□□□ 0.73
USP28-212ENST00000544750 ATRNO75882 1429 aa19.62■□□□□ 0.73
USP28-212ENST00000544750 ATAD2Q6PL18 1390 aa19.61■□□□□ 0.73
USP28-212ENST00000544750 USP21Q9UK80 565 aa19.61■□□□□ 0.73
USP28-212ENST00000544750 MYOM2P54296 1465 aa19.6■□□□□ 0.73
USP28-212ENST00000544750 TRPC5Q9UL62 973 aaPredicted RBP19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms