RNA–Protein interactions for RNA: ENST00000544336.5

PDCD2-211, Transcript of programmed cell death 2, humanhuman

TSL 1 (best)

Gene PDCD2, Length 1,164 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD2-211ENST00000544336 ITGAEP38570 1179 aa42.24■■■■■ 4.35
PDCD2-211ENST00000544336 E9PCH4 1651 aa42.22■■■■■ 4.35
PDCD2-211ENST00000544336 RBM33Q96EV2 1170 aaKnown RBP42.22■■■■■ 4.35
PDCD2-211ENST00000544336 ROCK1Q13464 1354 aa42.22■■■■■ 4.35
PDCD2-211ENST00000544336 PROSER2Q86WR7 435 aaPredicted RBP42.21■■■■■ 4.35
PDCD2-211ENST00000544336 TMEM131LA2VDJ0 1609 aa42.2■■■■■ 4.35
PDCD2-211ENST00000544336 PHF23Q9BUL5 403 aaPredicted RBP42.19■■■■■ 4.34
PDCD2-211ENST00000544336 ZFYVE9O95405 1425 aa42.19■■■■■ 4.34
PDCD2-211ENST00000544336 RIMS2Q9UQ26 1411 aa42.18■■■■■ 4.34
PDCD2-211ENST00000544336 PPP1R15AO75807 674 aaPredicted RBP42.17■■■■■ 4.34
PDCD2-211ENST00000544336 CHGAP10645 457 aaKnown RBP42.17■■■■■ 4.34
PDCD2-211ENST00000544336 IQGAP3Q86VI3 1631 aa42.17■■■■■ 4.34
PDCD2-211ENST00000544336 NWD1Q149M9 1564 aa42.16■■■■■ 4.34
PDCD2-211ENST00000544336 NKTRP30414 1462 aaKnown RBP42.12■■■■■ 4.33
PDCD2-211ENST00000544336 PLEKHG1Q9ULL1 1385 aa42.12■■■■■ 4.33
PDCD2-211ENST00000544336 HDGFP51858 240 aaKnown RBP42.09■■■■■ 4.33
PDCD2-211ENST00000544336 NUP155O75694 1391 aa42.08■■■■■ 4.33
PDCD2-211ENST00000544336 FAM135BQ49AJ0 1406 aa42.07■■■■■ 4.33
PDCD2-211ENST00000544336 CHD2O14647 1828 aaKnown RBP42.06■■■■■ 4.32
PDCD2-211ENST00000544336 NUTM2DQ5VT03 806 aaPredicted RBP42.05■■■■■ 4.32
PDCD2-211ENST00000544336 ROBO1Q9Y6N7 1651 aa42.05■■■■■ 4.32
PDCD2-211ENST00000544336 ABCF1Q8NE71 845 aaKnown RBP eCLIP42■■■■■ 4.31
PDCD2-211ENST00000544336 MSH6P52701 1360 aa42■■■■■ 4.31
PDCD2-211ENST00000544336 TBX22Q9Y458 520 aa41.94■■■■■ 4.3
PDCD2-211ENST00000544336 ADAMTS13Q76LX8 1427 aa41.91■■■■■ 4.3
PDCD2-211ENST00000544336 SPHKAPQ2M3C7 1700 aa41.88■■■■■ 4.29
PDCD2-211ENST00000544336 DIP2AQ14689 1571 aa41.88■■■■■ 4.29
PDCD2-211ENST00000544336 SLAIN2Q9P270 581 aa41.86■■■■■ 4.29
PDCD2-211ENST00000544336 C14orf37Q86TY3 774 aa41.84■■■■■ 4.29
PDCD2-211ENST00000544336 PHLPP1O60346 1717 aa41.81■■■■■ 4.28
PDCD2-211ENST00000544336 RGS17Q9UGC6 210 aaPredicted RBP41.8■■■■■ 4.28
PDCD2-211ENST00000544336 TRPM2O94759 1503 aa41.79■■■■■ 4.28
PDCD2-211ENST00000544336 PIK3R4Q99570 1358 aa41.76■■■■■ 4.28
PDCD2-211ENST00000544336 RRBP1Q9P2E9 1410 aaKnown RBP41.76■■■■■ 4.28
PDCD2-211ENST00000544336 NCOA3Q9Y6Q9 1424 aa41.75■■■■■ 4.27
PDCD2-211ENST00000544336 ZNF326Q5BKZ1 582 aaKnown RBP41.74■■■■■ 4.27
PDCD2-211ENST00000544336 SIPA1L2Q9P2F8 1722 aaPredicted RBP41.74■■■■■ 4.27
PDCD2-211ENST00000544336 PTPRUQ92729 1446 aa41.71■■■■■ 4.27
PDCD2-211ENST00000544336 AMOTL2Q9Y2J4 779 aa41.71■■■■■ 4.27
PDCD2-211ENST00000544336 NRXN3Q9Y4C0 1643 aa41.7■■■■■ 4.27
PDCD2-211ENST00000544336 CLTCL1P53675 1640 aa41.68■■■■■ 4.26
PDCD2-211ENST00000544336 NAIPQ13075 1403 aa41.67■■■■■ 4.26
PDCD2-211ENST00000544336 ATF3P18847 181 aa41.65■■■■■ 4.26
PDCD2-211ENST00000544336 C19orf44Q9H6X5 657 aa41.65■■■■■ 4.26
PDCD2-211ENST00000544336 SETBP1Q9Y6X0 1596 aa41.64■■■■■ 4.26
PDCD2-211ENST00000544336 COL16A1Q07092 1604 aaPredicted RBP41.64■■■■■ 4.26
PDCD2-211ENST00000544336 CADPS2Q86UW7 1296 aa41.63■■■■■ 4.25
PDCD2-211ENST00000544336 JCADQ9P266 1359 aa41.62■■■■■ 4.25
PDCD2-211ENST00000544336 XRN1Q8IZH2 1706 aaKnown RBP41.61■■■■■ 4.25
PDCD2-211ENST00000544336 KIF1BO60333 1816 aa41.59■■■■■ 4.25
PDCD2-211ENST00000544336 POTEAQ6S8J7 498 aa41.58■■■■■ 4.25
PDCD2-211ENST00000544336 NEXMIFQ5QGS0 1516 aa41.56■■■■■ 4.24
PDCD2-211ENST00000544336 TRIM52Q96A61 297 aa41.56■■■■■ 4.24
PDCD2-211ENST00000544336 METP08581 1390 aa41.54■■■■■ 4.24
PDCD2-211ENST00000544336 AHDC1Q5TGY3 1603 aaPredicted RBP41.51■■■■■ 4.24
PDCD2-211ENST00000544336 HFM1A2PYH4 1435 aa41.47■■■■■ 4.23
PDCD2-211ENST00000544336 BRINP3Q76B58 766 aa41.45■■■■■ 4.23
PDCD2-211ENST00000544336 DCCP43146 1447 aa41.44■■■■■ 4.23
PDCD2-211ENST00000544336 LRP6O75581 1613 aa41.42■■■■■ 4.22
PDCD2-211ENST00000544336 SHPRHQ149N8 1683 aa41.41■■■■■ 4.22
PDCD2-211ENST00000544336 SLC4A1APQ9BWU0 796 aaKnown RBP41.4■■■■■ 4.22
PDCD2-211ENST00000544336 SPATA31A6Q5VVP1 1343 aa41.4■■■■■ 4.22
PDCD2-211ENST00000544336 MEX3CQ5U5Q3 659 aaKnown RBP41.38■■■■■ 4.21
PDCD2-211ENST00000544336 ASXL1Q8IXJ9 1541 aa41.38■■■■■ 4.21
PDCD2-211ENST00000544336 MST1RQ04912 1400 aa41.37■■■■■ 4.21
PDCD2-211ENST00000544336 NALCNQ8IZF0 1738 aa41.37■■■■■ 4.21
PDCD2-211ENST00000544336 ADGRL3Q9HAR2 1447 aa41.35■■■■■ 4.21
PDCD2-211ENST00000544336 SETD1AO15047 1707 aaKnown RBP41.32■■■■■ 4.21
PDCD2-211ENST00000544336 VGFO15240 615 aaPredicted RBP41.31■■■■■ 4.2
PDCD2-211ENST00000544336 NHSL1Q5SYE7 1610 aa41.29■■■■■ 4.2
PDCD2-211ENST00000544336 PPLO60437 1756 aa41.27■■■■■ 4.2
PDCD2-211ENST00000544336 NUTM2BA6NNL0 878 aaPredicted RBP41.27■■■■■ 4.2
PDCD2-211ENST00000544336 NUTM2EB1AL46 878 aaPredicted RBP41.27■■■■■ 4.2
PDCD2-211ENST00000544336 FOXD1Q16676 465 aa41.27■■■■■ 4.2
PDCD2-211ENST00000544336 NUTM2AQ8IVF1 878 aaPredicted RBP41.27■■■■■ 4.2
PDCD2-211ENST00000544336 RPGRIP1LQ68CZ1 1315 aa41.23■■■■■ 4.19
PDCD2-211ENST00000544336 DDX17Q92841 729 aaKnown RBP41.22■■■■■ 4.19
PDCD2-211ENST00000544336 PTCH1Q13635 1447 aa41.2■■■■■ 4.19
PDCD2-211ENST00000544336 ROBO2Q9HCK4 1378 aa41.2■■■■■ 4.19
PDCD2-211ENST00000544336 SETD5Q9C0A6 1442 aa41.19■■■■■ 4.18
PDCD2-211ENST00000544336 ZNF772Q68DY9 489 aaPredicted RBP41.18■■■■■ 4.18
PDCD2-211ENST00000544336 LRRC59Q96AG4 307 aaKnown RBP41.14■■■■■ 4.18
PDCD2-211ENST00000544336 C1orf167Q5SNV9 1468 aa41.14■■■■■ 4.18
PDCD2-211ENST00000544336 CCDC144AA2RUR9 1427 aa41.1■■■■■ 4.17
PDCD2-211ENST00000544336 RGL3Q3MIN7 710 aa41.08■■■■■ 4.17
PDCD2-211ENST00000544336 PNPLA6Q8IY17 1366 aa41.06■■■■■ 4.16
PDCD2-211ENST00000544336 PRAG1Q86YV5 1406 aa41.06■■■■■ 4.16
PDCD2-211ENST00000544336 ADGRF5Q8IZF2 1346 aa41.05■■■■■ 4.16
PDCD2-211ENST00000544336 MPHOSPH9Q99550 1183 aa41.05■■■■■ 4.16
PDCD2-211ENST00000544336 AFF2P51816 1311 aa41.04■■■■■ 4.16
PDCD2-211ENST00000544336 ORAI2Q96SN7 254 aa41.04■■■■■ 4.16
PDCD2-211ENST00000544336 IFT172Q9UG01 1749 aa41.01■■■■■ 4.16
PDCD2-211ENST00000544336 RXRBP28702 533 aa40.99■■■■■ 4.15
PDCD2-211ENST00000544336 LAMC1P11047 1609 aa40.99■■■■■ 4.15
PDCD2-211ENST00000544336 SPATA31E1Q6ZUB1 1445 aa40.99■■■■■ 4.15
PDCD2-211ENST00000544336 C8orf37Q96NL8 207 aa40.98■■■■■ 4.15
PDCD2-211ENST00000544336 STK26Q9P289 416 aa40.96■■■■■ 4.15
PDCD2-211ENST00000544336 ANKRD30BQ9BXX2 1392 aa40.92■■■■■ 4.14
PDCD2-211ENST00000544336 SOS2Q07890 1332 aaPredicted RBP40.92■■■■■ 4.14
PDCD2-211ENST00000544336 CDC42BPGQ6DT37 1551 aa40.91■■■■■ 4.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms