RNA–Protein interactions for RNA: ENST00000543916.5

CD9-210, Transcript of CD9 molecule, humanhuman

TSL 1 (best)

Gene CD9, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-210ENST00000543916 TXNDC2Q86VQ3 553 aa22.21■■□□□ 1.15
CD9-210ENST00000543916 NEXMIFQ5QGS0 1516 aa22.21■■□□□ 1.15
CD9-210ENST00000543916 DMRT2Q9Y5R5 561 aa22.2■■□□□ 1.14
CD9-210ENST00000543916 EID1Q9Y6B2 187 aa22.19■■□□□ 1.14
CD9-210ENST00000543916 SPATA31E1Q6ZUB1 1445 aa22.19■■□□□ 1.14
CD9-210ENST00000543916 PPLO60437 1756 aa22.18■■□□□ 1.14
CD9-210ENST00000543916 DHX57Q6P158 1386 aaKnown RBP22.18■■□□□ 1.14
CD9-210ENST00000543916 IFT172Q9UG01 1749 aa22.17■■□□□ 1.14
CD9-210ENST00000543916 ZNF326Q5BKZ1 582 aaKnown RBP22.16■■□□□ 1.14
CD9-210ENST00000543916 NUTM2DQ5VT03 806 aaPredicted RBP22.14■■□□□ 1.13
CD9-210ENST00000543916 PLEKHG1Q9ULL1 1385 aa22.12■■□□□ 1.13
CD9-210ENST00000543916 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.12■■□□□ 1.13
CD9-210ENST00000543916 NRXN3Q9Y4C0 1643 aa22.12■■□□□ 1.13
CD9-210ENST00000543916 PPP1R15AO75807 674 aaPredicted RBP22.11■■□□□ 1.13
CD9-210ENST00000543916 HDGFP51858 240 aaKnown RBP22.11■■□□□ 1.13
CD9-210ENST00000543916 SENP3Q9H4L4 574 aaPredicted RBP22.1■■□□□ 1.13
CD9-210ENST00000543916 RGL3Q3MIN7 710 aa22.09■■□□□ 1.13
CD9-210ENST00000543916 SETBP1Q9Y6X0 1596 aa22.08■■□□□ 1.13
CD9-210ENST00000543916 RPGRIP1LQ68CZ1 1315 aa22.07■■□□□ 1.12
CD9-210ENST00000543916 STRCP1A6NGW2 1772 aa22.07■■□□□ 1.12
CD9-210ENST00000543916 ZNF335Q9H4Z2 1342 aaPredicted RBP22.06■■□□□ 1.12
CD9-210ENST00000543916 LTBP4Q8N2S1 1624 aa22.06■■□□□ 1.12
CD9-210ENST00000543916 DIP2AQ14689 1571 aa22.06■■□□□ 1.12
CD9-210ENST00000543916 ADAMTS13Q76LX8 1427 aa22.06■■□□□ 1.12
CD9-210ENST00000543916 SLC26A8Q96RN1 970 aa22.05■■□□□ 1.12
CD9-210ENST00000543916 SETD1AO15047 1707 aaKnown RBP22.03■■□□□ 1.12
CD9-210ENST00000543916 BCANQ96GW7 911 aa22.03■■□□□ 1.12
CD9-210ENST00000543916 VGFO15240 615 aaPredicted RBP22.01■■□□□ 1.11
CD9-210ENST00000543916 MYOM2P54296 1465 aa22.01■■□□□ 1.11
CD9-210ENST00000543916 SIN3AQ96ST3 1273 aa22■■□□□ 1.11
CD9-210ENST00000543916 CHD2O14647 1828 aaKnown RBP22■■□□□ 1.11
CD9-210ENST00000543916 ADGRF5Q8IZF2 1346 aa22■■□□□ 1.11
CD9-210ENST00000543916 NWD1Q149M9 1564 aa21.99■■□□□ 1.11
CD9-210ENST00000543916 ALKQ9UM73 1620 aa21.98■■□□□ 1.11
CD9-210ENST00000543916 NRXN1Q9ULB1 1477 aa21.97■■□□□ 1.11
CD9-210ENST00000543916 TBX22Q9Y458 520 aa21.97■■□□□ 1.11
CD9-210ENST00000543916 CPS1P31327 1500 aa21.96■■□□□ 1.11
CD9-210ENST00000543916 PIK3C2GO75747 1445 aa21.96■■□□□ 1.11
CD9-210ENST00000543916 NEUROD1Q13562 356 aa21.93■■□□□ 1.1
CD9-210ENST00000543916 XRN1Q8IZH2 1706 aaKnown RBP21.93■■□□□ 1.1
CD9-210ENST00000543916 XIRP1Q702N8 1843 aaKnown RBP21.92■■□□□ 1.1
CD9-210ENST00000543916 LAMC1P11047 1609 aa21.92■■□□□ 1.1
CD9-210ENST00000543916 PTPRUQ92729 1446 aa21.92■■□□□ 1.1
CD9-210ENST00000543916 METP08581 1390 aa21.92■■□□□ 1.1
CD9-210ENST00000543916 DCAF11Q8TEB1 546 aa21.92■■□□□ 1.1
CD9-210ENST00000543916 PIK3R4Q99570 1358 aa21.91■■□□□ 1.1
CD9-210ENST00000543916 ASXL1Q8IXJ9 1541 aa21.9■■□□□ 1.1
CD9-210ENST00000543916 KCNA6P17658 529 aa21.9■■□□□ 1.1
CD9-210ENST00000543916 KDM2AQ9Y2K7 1162 aa21.9■■□□□ 1.1
CD9-210ENST00000543916 LRRC7Q96NW7 1537 aa21.9■■□□□ 1.1
CD9-210ENST00000543916 NKTRP30414 1462 aaKnown RBP21.9■■□□□ 1.1
CD9-210ENST00000543916 CERKQ8TCT0 537 aa21.89■■□□□ 1.09
CD9-210ENST00000543916 IQSEC2Q5JU85 1478 aa21.86■■□□□ 1.09
CD9-210ENST00000543916 L3MBTL2Q969R5 705 aa21.86■■□□□ 1.09
CD9-210ENST00000543916 STAC3Q96MF2 364 aa21.84■■□□□ 1.09
CD9-210ENST00000543916 CFAP70Q5T0N1 1121 aa21.83■■□□□ 1.09
CD9-210ENST00000543916 C14orf93Q9H972 538 aaKnown RBP21.83■■□□□ 1.09
CD9-210ENST00000543916 AMOTL2Q9Y2J4 779 aa21.83■■□□□ 1.09
CD9-210ENST00000543916 PRAG1Q86YV5 1406 aa21.82■■□□□ 1.08
CD9-210ENST00000543916 KNDC1Q76NI1 1749 aa21.82■■□□□ 1.08
CD9-210ENST00000543916 KIAA1210Q9ULL0 1709 aa21.82■■□□□ 1.08
CD9-210ENST00000543916 CLSPNQ9HAW4 1339 aa21.81■■□□□ 1.08
CD9-210ENST00000543916 ADGRB1O14514 1584 aa21.81■■□□□ 1.08
CD9-210ENST00000543916 PROSER2Q86WR7 435 aaPredicted RBP21.8■■□□□ 1.08
CD9-210ENST00000543916 CCER1Q8TC90 406 aaPredicted RBP21.8■■□□□ 1.08
CD9-210ENST00000543916 TMEM94Q12767 1356 aa21.79■■□□□ 1.08
CD9-210ENST00000543916 TONSLQ96HA7 1378 aa21.79■■□□□ 1.08
CD9-210ENST00000543916 TMEM132EQ6IEE7 984 aa21.79■■□□□ 1.08
CD9-210ENST00000543916 RBM33Q96EV2 1170 aaKnown RBP21.79■■□□□ 1.08
CD9-210ENST00000543916 TRPM1Q7Z4N2 1603 aa21.77■■□□□ 1.08
CD9-210ENST00000543916 PTCH1Q13635 1447 aa21.77■■□□□ 1.08
CD9-210ENST00000543916 YTHDC2Q9H6S0 1430 aaKnown RBP21.77■■□□□ 1.08
CD9-210ENST00000543916 LRPPRCP42704 1394 aaKnown RBP21.76■■□□□ 1.07
CD9-210ENST00000543916 TECPR2O15040 1411 aa21.75■■□□□ 1.07
CD9-210ENST00000543916 NALCNQ8IZF0 1738 aa21.75■■□□□ 1.07
CD9-210ENST00000543916 ROBO2Q9HCK4 1378 aa21.74■■□□□ 1.07
CD9-210ENST00000543916 STK26Q9P289 416 aa21.73■■□□□ 1.07
CD9-210ENST00000543916 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.72■■□□□ 1.07
CD9-210ENST00000543916 ABCC11Q96J66 1382 aa21.72■■□□□ 1.07
CD9-210ENST00000543916 NCOA3Q9Y6Q9 1424 aa21.72■■□□□ 1.07
CD9-210ENST00000543916 ARHGEF28Q8N1W1 1705 aaKnown RBP21.7■■□□□ 1.06
CD9-210ENST00000543916 NBPF8Q3BBV2 869 aa21.69■■□□□ 1.06
CD9-210ENST00000543916 DLC1Q96QB1 1528 aa21.69■■□□□ 1.06
CD9-210ENST00000543916 NBPF1Q3BBV0 1214 aa21.68■■□□□ 1.06
CD9-210ENST00000543916 MSH6P52701 1360 aa21.67■■□□□ 1.06
CD9-210ENST00000543916 ADGRL3Q9HAR2 1447 aa21.66■■□□□ 1.06
CD9-210ENST00000543916 PLEKHH1Q9ULM0 1364 aa21.66■■□□□ 1.06
CD9-210ENST00000543916 UBAP1LF5GYI3 381 aa21.66■■□□□ 1.06
CD9-210ENST00000543916 FAM135BQ49AJ0 1406 aa21.65■■□□□ 1.06
CD9-210ENST00000543916 C14orf37Q86TY3 774 aa21.65■■□□□ 1.06
CD9-210ENST00000543916 FBXO41Q8TF61 875 aa21.65■■□□□ 1.06
CD9-210ENST00000543916 WAPLQ7Z5K2 1190 aa21.64■■□□□ 1.05
CD9-210ENST00000543916 TRAK1Q9UPV9 953 aa21.64■■□□□ 1.05
CD9-210ENST00000543916 RALGAPBQ86X10 1494 aa21.63■■□□□ 1.05
CD9-210ENST00000543916 SIRT1Q96EB6 747 aa21.62■■□□□ 1.05
CD9-210ENST00000543916 DCCP43146 1447 aa21.62■■□□□ 1.05
CD9-210ENST00000543916 TOM1O60784 492 aa21.61■■□□□ 1.05
CD9-210ENST00000543916 C19orf44Q9H6X5 657 aa21.61■■□□□ 1.05
CD9-210ENST00000543916 TIMELESSQ9UNS1 1208 aa21.61■■□□□ 1.05
CD9-210ENST00000543916 CDC42BPGQ6DT37 1551 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms