RNA–Protein interactions for RNA: ENST00000543473.1

SUDS3-204, Transcript of SDS3 homolog, SIN3A corepressor complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SUDS3, Length 4,897 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUDS3-204ENST00000543473 KIAA0586Q9BVV6 1533 aa24.01■■□□□ 1.43
SUDS3-204ENST00000543473 HMMRO75330 724 aa24.01■■□□□ 1.43
SUDS3-204ENST00000543473 NGEFQ8N5V2 710 aa24■■□□□ 1.43
SUDS3-204ENST00000543473 TRIM6-TRIM34B2RNG4 842 aa23.99■■□□□ 1.43
SUDS3-204ENST00000543473 FAM13BQ9NYF5 915 aa23.99■■□□□ 1.43
SUDS3-204ENST00000543473 TROQ12816 1431 aaPredicted RBP23.99■■□□□ 1.43
SUDS3-204ENST00000543473 MRE11P49959 708 aa23.99■■□□□ 1.43
SUDS3-204ENST00000543473 TIAM1Q13009 1591 aa23.96■■□□□ 1.43
SUDS3-204ENST00000543473 EHBP1L1Q8N3D4 1523 aa23.96■■□□□ 1.43
SUDS3-204ENST00000543473 C22orf23Q9BZE7 217 aa23.96■■□□□ 1.43
SUDS3-204ENST00000543473 URB2Q14146 1524 aaKnown RBP23.95■■□□□ 1.43
SUDS3-204ENST00000543473 HTATSF1O43719 755 aaKnown RBP23.95■■□□□ 1.42
SUDS3-204ENST00000543473 CSPP1Q1MSJ5 1256 aa23.95■■□□□ 1.42
SUDS3-204ENST00000543473 SMG6Q86US8 1419 aaKnown RBP23.94■■□□□ 1.42
SUDS3-204ENST00000543473 DDX19BQ9UMR2 479 aa23.94■■□□□ 1.42
SUDS3-204ENST00000543473 WDR97A6NE52 1622 aa23.94■■□□□ 1.42
SUDS3-204ENST00000543473 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.93■■□□□ 1.42
SUDS3-204ENST00000543473 NGDNQ8NEJ9 315 aaKnown RBP23.93■■□□□ 1.42
SUDS3-204ENST00000543473 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.93■■□□□ 1.42
SUDS3-204ENST00000543473 DZIP1LQ8IYY4 767 aaKnown RBP23.93■■□□□ 1.42
SUDS3-204ENST00000543473 PNISRQ8TF01 805 aaKnown RBP23.93■■□□□ 1.42
SUDS3-204ENST00000543473 MIA2Q96PC5 1412 aa23.92■■□□□ 1.42
SUDS3-204ENST00000543473 PRKCSHP14314 528 aaPredicted RBP23.91■■□□□ 1.42
SUDS3-204ENST00000543473 ADAMTS8Q9UP79 889 aa23.91■■□□□ 1.42
SUDS3-204ENST00000543473 PANK1Q8TE04 598 aa23.91■■□□□ 1.42
SUDS3-204ENST00000543473 TRAK2O60296 914 aa23.9■■□□□ 1.42
SUDS3-204ENST00000543473 HECW1Q76N89 1606 aa23.9■■□□□ 1.42
SUDS3-204ENST00000543473 SLC4A10Q6U841 1118 aa23.9■■□□□ 1.42
SUDS3-204ENST00000543473 STK31Q9BXU1 1019 aa23.89■■□□□ 1.42
SUDS3-204ENST00000543473 ELL2O00472 640 aaPredicted RBP23.89■■□□□ 1.41
SUDS3-204ENST00000543473 IQGAP2Q13576 1575 aa23.88■■□□□ 1.41
SUDS3-204ENST00000543473 MINK1Q8N4C8 1332 aaPredicted RBP23.88■■□□□ 1.41
SUDS3-204ENST00000543473 CDK13Q14004 1512 aaKnown RBP23.88■■□□□ 1.41
SUDS3-204ENST00000543473 FOXD4L6Q3SYB3 417 aaPredicted RBP23.88■■□□□ 1.41
SUDS3-204ENST00000543473 FOXD4L3Q6VB84 417 aaPredicted RBP23.88■■□□□ 1.41
SUDS3-204ENST00000543473 TNNT3P45378 269 aaPredicted RBP23.87■■□□□ 1.41
SUDS3-204ENST00000543473 EVC2Q86UK5 1308 aa23.87■■□□□ 1.41
SUDS3-204ENST00000543473 AAMPQ13685 434 aa23.87■■□□□ 1.41
SUDS3-204ENST00000543473 EPRSP07814 1512 aaKnown RBP23.86■■□□□ 1.41
SUDS3-204ENST00000543473 C9orf84Q5VXU9 1444 aa23.86■■□□□ 1.41
SUDS3-204ENST00000543473 LMOD3Q0VAK6 560 aa23.85■■□□□ 1.41
SUDS3-204ENST00000543473 NBPF8Q3BBV2 869 aa23.85■■□□□ 1.41
SUDS3-204ENST00000543473 ZNF608Q9ULD9 1512 aaPredicted RBP23.83■■□□□ 1.41
SUDS3-204ENST00000543473 CUL7Q14999 1698 aa23.83■■□□□ 1.4
SUDS3-204ENST00000543473 LNPKQ9C0E8 428 aa23.82■■□□□ 1.4
SUDS3-204ENST00000543473 NASPP49321 788 aaPredicted RBP23.82■■□□□ 1.4
SUDS3-204ENST00000543473 NUCB2P80303 420 aa23.82■■□□□ 1.4
SUDS3-204ENST00000543473 HFM1A2PYH4 1435 aa23.82■■□□□ 1.4
SUDS3-204ENST00000543473 GRIN2AQ12879 1464 aa23.81■■□□□ 1.4
SUDS3-204ENST00000543473 CSB-PGBD3P0DP91 1061 aa23.81■■□□□ 1.4
SUDS3-204ENST00000543473 KIF16BQ96L93 1317 aa23.81■■□□□ 1.4
SUDS3-204ENST00000543473 REC8O95072 547 aa23.81■■□□□ 1.4
SUDS3-204ENST00000543473 STAC3Q96MF2 364 aa23.8■■□□□ 1.4
SUDS3-204ENST00000543473 SCAPERQ9BY12 1400 aa23.8■■□□□ 1.4
SUDS3-204ENST00000543473 RUNDC1Q96C34 613 aa23.8■■□□□ 1.4
SUDS3-204ENST00000543473 ATP6V1DQ9Y5K8 247 aa23.8■■□□□ 1.4
SUDS3-204ENST00000543473 GNL2Q13823 731 aaKnown RBP23.79■■□□□ 1.4
SUDS3-204ENST00000543473 MCTP1Q6DN14 999 aa23.79■■□□□ 1.4
SUDS3-204ENST00000543473 R3HCC1Q9Y3T6 440 aaKnown RBP23.78■■□□□ 1.4
SUDS3-204ENST00000543473 TPM4P67936 248 aa23.78■■□□□ 1.4
SUDS3-204ENST00000543473 RILPL2Q969X0 211 aa23.78■■□□□ 1.4
SUDS3-204ENST00000543473 PLB1Q6P1J6 1458 aa23.78■■□□□ 1.4
SUDS3-204ENST00000543473 MAGI1Q96QZ7 1491 aaPredicted RBP23.78■■□□□ 1.4
SUDS3-204ENST00000543473 PCF11O94913 1555 aaKnown RBP23.78■■□□□ 1.4
SUDS3-204ENST00000543473 BIVM-ERCC5R4GMW8 1640 aa23.77■■□□□ 1.4
SUDS3-204ENST00000543473 AMPHP49418 695 aa23.77■■□□□ 1.4
SUDS3-204ENST00000543473 DAPK1P53355 1430 aa23.76■■□□□ 1.39
SUDS3-204ENST00000543473 PLEKHH2Q8IVE3 1493 aa23.75■■□□□ 1.39
SUDS3-204ENST00000543473 PKNOX2Q96KN3 472 aa23.75■■□□□ 1.39
SUDS3-204ENST00000543473 SUPT6HQ7KZ85 1726 aaKnown RBP23.75■■□□□ 1.39
SUDS3-204ENST00000543473 TPM2P07951 284 aa23.75■■□□□ 1.39
SUDS3-204ENST00000543473 TMEM132EQ6IEE7 984 aa23.75■■□□□ 1.39
SUDS3-204ENST00000543473 GPATCH3Q96I76 525 aa23.75■■□□□ 1.39
SUDS3-204ENST00000543473 MAP7D2Q96T17 732 aa23.74■■□□□ 1.39
SUDS3-204ENST00000543473 RAPGEF3O95398 923 aa23.74■■□□□ 1.39
SUDS3-204ENST00000543473 PDZRN3Q9UPQ7 1066 aa23.74■■□□□ 1.39
SUDS3-204ENST00000543473 PDE3AQ14432 1141 aa23.73■■□□□ 1.39
SUDS3-204ENST00000543473 LTV1Q96GA3 475 aaPredicted RBP23.73■■□□□ 1.39
SUDS3-204ENST00000543473 HSP90B1P14625 803 aaKnown RBP23.72■■□□□ 1.39
SUDS3-204ENST00000543473 CFAP70Q5T0N1 1121 aa23.72■■□□□ 1.39
SUDS3-204ENST00000543473 ZNF771Q7L3S4 317 aaPredicted RBP23.71■■□□□ 1.39
SUDS3-204ENST00000543473 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.71■■□□□ 1.39
SUDS3-204ENST00000543473 PPP2R1AP30153 589 aa23.7■■□□□ 1.39
SUDS3-204ENST00000543473 CHMP4AQ9BY43 222 aa23.7■■□□□ 1.39
SUDS3-204ENST00000543473 KIAA1107Q9UPP5 1409 aa23.7■■□□□ 1.38
SUDS3-204ENST00000543473 RIPK4P57078 832 aa23.7■■□□□ 1.38
SUDS3-204ENST00000543473 COG3Q96JB2 828 aa23.7■■□□□ 1.38
SUDS3-204ENST00000543473 BCAR3O75815 825 aa23.7■■□□□ 1.38
SUDS3-204ENST00000543473 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.7■■□□□ 1.38
SUDS3-204ENST00000543473 MTERF4Q7Z6M4 381 aaKnown RBP23.69■■□□□ 1.38
SUDS3-204ENST00000543473 ARHGEF11O15085 1522 aa23.69■■□□□ 1.38
SUDS3-204ENST00000543473 GOLGA6L19H0YKK7 550 aa23.68■■□□□ 1.38
SUDS3-204ENST00000543473 INTS3Q68E01 1043 aaKnown RBP23.68■■□□□ 1.38
SUDS3-204ENST00000543473 API5Q9BZZ5 524 aaKnown RBP23.68■■□□□ 1.38
SUDS3-204ENST00000543473 ISY1Q9ULR0 285 aaKnown RBP23.67■■□□□ 1.38
SUDS3-204ENST00000543473 HDAC5Q9UQL6 1122 aa23.67■■□□□ 1.38
SUDS3-204ENST00000543473 NBPF1Q3BBV0 1214 aa23.67■■□□□ 1.38
SUDS3-204ENST00000543473 NAIPQ13075 1403 aa23.67■■□□□ 1.38
SUDS3-204ENST00000543473 BECN2A8MW95 431 aa23.66■■□□□ 1.38
SUDS3-204ENST00000543473 NPHP1O15259 732 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms