RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 RBM33Q96EV2 1170 aaKnown RBP27.93■■■□□ 2.06
CLSTN3-214ENST00000542663 PHLPP1O60346 1717 aa27.92■■■□□ 2.06
CLSTN3-214ENST00000542663 PROSER2Q86WR7 435 aaPredicted RBP27.91■■■□□ 2.06
CLSTN3-214ENST00000542663 RPRD2Q5VT52 1461 aaKnown RBP27.9■■■□□ 2.06
CLSTN3-214ENST00000542663 TMEM131LA2VDJ0 1609 aa27.9■■■□□ 2.06
CLSTN3-214ENST00000542663 ZFYVE9O95405 1425 aa27.89■■■□□ 2.06
CLSTN3-214ENST00000542663 SLC52A1Q9NWF4 448 aa27.87■■■□□ 2.05
CLSTN3-214ENST00000542663 POTEAQ6S8J7 498 aa27.86■■■□□ 2.05
CLSTN3-214ENST00000542663 UNC13BO14795 1591 aa27.84■■■□□ 2.05
CLSTN3-214ENST00000542663 ANKRD50Q9ULJ7 1429 aa27.84■■■□□ 2.05
CLSTN3-214ENST00000542663 E9PCH4 1651 aa27.83■■■□□ 2.05
CLSTN3-214ENST00000542663 SETD1AO15047 1707 aaKnown RBP27.83■■■□□ 2.05
CLSTN3-214ENST00000542663 MSH6P52701 1360 aa27.82■■■□□ 2.04
CLSTN3-214ENST00000542663 PLEKHG1Q9ULL1 1385 aa27.82■■■□□ 2.04
CLSTN3-214ENST00000542663 COL16A1Q07092 1604 aaPredicted RBP27.81■■■□□ 2.04
CLSTN3-214ENST00000542663 RIMS2Q9UQ26 1411 aa27.8■■■□□ 2.04
CLSTN3-214ENST00000542663 BCANQ96GW7 911 aa27.78■■■□□ 2.04
CLSTN3-214ENST00000542663 SLAIN2Q9P270 581 aa27.77■■■□□ 2.04
CLSTN3-214ENST00000542663 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.76■■■□□ 2.03
CLSTN3-214ENST00000542663 FAM50AQ14320 339 aaKnown RBP27.75■■■□□ 2.03
CLSTN3-214ENST00000542663 IQGAP3Q86VI3 1631 aa27.73■■■□□ 2.03
CLSTN3-214ENST00000542663 DIP2AQ14689 1571 aa27.72■■■□□ 2.03
CLSTN3-214ENST00000542663 JCADQ9P266 1359 aa27.72■■■□□ 2.03
CLSTN3-214ENST00000542663 ADAMTS13Q76LX8 1427 aa27.71■■■□□ 2.03
CLSTN3-214ENST00000542663 PPP1R15AO75807 674 aaPredicted RBP27.7■■■□□ 2.02
CLSTN3-214ENST00000542663 NCOA3Q9Y6Q9 1424 aa27.69■■■□□ 2.02
CLSTN3-214ENST00000542663 TBX22Q9Y458 520 aa27.69■■■□□ 2.02
CLSTN3-214ENST00000542663 SHPRHQ149N8 1683 aa27.68■■■□□ 2.02
CLSTN3-214ENST00000542663 HDGFP51858 240 aaKnown RBP27.67■■■□□ 2.02
CLSTN3-214ENST00000542663 LRP6O75581 1613 aa27.67■■■□□ 2.02
CLSTN3-214ENST00000542663 AHDC1Q5TGY3 1603 aaPredicted RBP27.67■■■□□ 2.02
CLSTN3-214ENST00000542663 NUTM2DQ5VT03 806 aaPredicted RBP27.63■■■□□ 2.01
CLSTN3-214ENST00000542663 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.63■■■□□ 2.01
CLSTN3-214ENST00000542663 CHGAP10645 457 aaKnown RBP27.62■■■□□ 2.01
CLSTN3-214ENST00000542663 NRXN3Q9Y4C0 1643 aa27.62■■■□□ 2.01
CLSTN3-214ENST00000542663 TRPM2O94759 1503 aa27.62■■■□□ 2.01
CLSTN3-214ENST00000542663 PIK3R4Q99570 1358 aa27.6■■■□□ 2.01
CLSTN3-214ENST00000542663 XRN1Q8IZH2 1706 aaKnown RBP27.59■■■□□ 2.01
CLSTN3-214ENST00000542663 PTPRUQ92729 1446 aa27.58■■■□□ 2.01
CLSTN3-214ENST00000542663 SPHKAPQ2M3C7 1700 aa27.58■■■□□ 2.01
CLSTN3-214ENST00000542663 ROCK1Q13464 1354 aa27.58■■■□□ 2.01
CLSTN3-214ENST00000542663 C14orf37Q86TY3 774 aa27.57■■■□□ 2
CLSTN3-214ENST00000542663 C19orf44Q9H6X5 657 aa27.56■■■□□ 2
CLSTN3-214ENST00000542663 SPATA31A6Q5VVP1 1343 aa27.56■■■□□ 2
CLSTN3-214ENST00000542663 CADPS2Q86UW7 1296 aa27.54■■■□□ 2
CLSTN3-214ENST00000542663 NHSL1Q5SYE7 1610 aa27.52■■■□□ 2
CLSTN3-214ENST00000542663 SETBP1Q9Y6X0 1596 aa27.52■■■□□ 2
CLSTN3-214ENST00000542663 ATF3P18847 181 aa27.51■■□□□ 1.99
CLSTN3-214ENST00000542663 AMOTL2Q9Y2J4 779 aa27.5■■□□□ 1.99
CLSTN3-214ENST00000542663 NUP155O75694 1391 aa27.49■■□□□ 1.99
CLSTN3-214ENST00000542663 BRINP3Q76B58 766 aa27.48■■□□□ 1.99
CLSTN3-214ENST00000542663 DCCP43146 1447 aa27.48■■□□□ 1.99
CLSTN3-214ENST00000542663 ASXL1Q8IXJ9 1541 aa27.47■■□□□ 1.99
CLSTN3-214ENST00000542663 MEX3CQ5U5Q3 659 aaKnown RBP27.46■■□□□ 1.99
CLSTN3-214ENST00000542663 NALCNQ8IZF0 1738 aa27.46■■□□□ 1.99
CLSTN3-214ENST00000542663 ZNF772Q68DY9 489 aaPredicted RBP27.45■■□□□ 1.98
CLSTN3-214ENST00000542663 MST1RQ04912 1400 aa27.43■■□□□ 1.98
CLSTN3-214ENST00000542663 CLTCL1P53675 1640 aa27.41■■□□□ 1.98
CLSTN3-214ENST00000542663 KIF1BO60333 1816 aa27.4■■□□□ 1.98
CLSTN3-214ENST00000542663 UPF1Q92900 1129 aaKnown RBP eCLIP27.4■■□□□ 1.98
CLSTN3-214ENST00000542663 TRIM52Q96A61 297 aa27.4■■□□□ 1.98
CLSTN3-214ENST00000542663 SETD5Q9C0A6 1442 aa27.4■■□□□ 1.98
CLSTN3-214ENST00000542663 METP08581 1390 aa27.39■■□□□ 1.98
CLSTN3-214ENST00000542663 NEXMIFQ5QGS0 1516 aa27.39■■□□□ 1.98
CLSTN3-214ENST00000542663 ITGAEP38570 1179 aa27.37■■□□□ 1.97
CLSTN3-214ENST00000542663 NUTM2BA6NNL0 878 aaPredicted RBP27.36■■□□□ 1.97
CLSTN3-214ENST00000542663 NUTM2EB1AL46 878 aaPredicted RBP27.36■■□□□ 1.97
CLSTN3-214ENST00000542663 NUTM2AQ8IVF1 878 aaPredicted RBP27.36■■□□□ 1.97
CLSTN3-214ENST00000542663 CDK12Q9NYV4 1490 aaPredicted RBP27.36■■□□□ 1.97
CLSTN3-214ENST00000542663 ADGRL3Q9HAR2 1447 aa27.34■■□□□ 1.97
CLSTN3-214ENST00000542663 LAMC1P11047 1609 aa27.32■■□□□ 1.96
CLSTN3-214ENST00000542663 RXRBP28702 533 aa27.32■■□□□ 1.96
CLSTN3-214ENST00000542663 ZNF326Q5BKZ1 582 aaKnown RBP27.32■■□□□ 1.96
CLSTN3-214ENST00000542663 AFF2P51816 1311 aa27.32■■□□□ 1.96
CLSTN3-214ENST00000542663 DDX17Q92841 729 aaKnown RBP27.28■■□□□ 1.96
CLSTN3-214ENST00000542663 PNPLA6Q8IY17 1366 aa27.27■■□□□ 1.96
CLSTN3-214ENST00000542663 LRRC59Q96AG4 307 aaKnown RBP27.27■■□□□ 1.96
CLSTN3-214ENST00000542663 PPARGC1BQ86YN6 1023 aaKnown RBP27.23■■□□□ 1.95
CLSTN3-214ENST00000542663 RGS12O14924 1447 aa27.23■■□□□ 1.95
CLSTN3-214ENST00000542663 C1orf167Q5SNV9 1468 aa27.22■■□□□ 1.95
CLSTN3-214ENST00000542663 PPLO60437 1756 aa27.22■■□□□ 1.95
CLSTN3-214ENST00000542663 PTCH1Q13635 1447 aa27.2■■□□□ 1.94
CLSTN3-214ENST00000542663 C8orf37Q96NL8 207 aa27.2■■□□□ 1.94
CLSTN3-214ENST00000542663 NAIPQ13075 1403 aa27.16■■□□□ 1.94
CLSTN3-214ENST00000542663 QTRT2Q9H974 415 aaKnown RBP27.16■■□□□ 1.94
CLSTN3-214ENST00000542663 ROBO2Q9HCK4 1378 aa27.16■■□□□ 1.94
CLSTN3-214ENST00000542663 COL22A1Q8NFW1 1626 aaPredicted RBP27.16■■□□□ 1.94
CLSTN3-214ENST00000542663 PRAG1Q86YV5 1406 aa27.16■■□□□ 1.94
CLSTN3-214ENST00000542663 MARF1Q9Y4F3 1742 aaKnown RBP27.14■■□□□ 1.94
CLSTN3-214ENST00000542663 RBM6P78332 1123 aaKnown RBP27.14■■□□□ 1.94
CLSTN3-214ENST00000542663 RRBP1Q9P2E9 1410 aaKnown RBP27.12■■□□□ 1.93
CLSTN3-214ENST00000542663 SOS2Q07890 1332 aaPredicted RBP27.12■■□□□ 1.93
CLSTN3-214ENST00000542663 ORAI2Q96SN7 254 aa27.11■■□□□ 1.93
CLSTN3-214ENST00000542663 ADAMTS2O95450 1211 aa27.1■■□□□ 1.93
CLSTN3-214ENST00000542663 VGFO15240 615 aaPredicted RBP27.08■■□□□ 1.93
CLSTN3-214ENST00000542663 NGLY1Q96IV0 654 aa27.08■■□□□ 1.93
CLSTN3-214ENST00000542663 CDC42BPGQ6DT37 1551 aa27.05■■□□□ 1.92
CLSTN3-214ENST00000542663 HFM1A2PYH4 1435 aa27.05■■□□□ 1.92
CLSTN3-214ENST00000542663 IFT172Q9UG01 1749 aa27.04■■□□□ 1.92
CLSTN3-214ENST00000542663 RPGRIP1LQ68CZ1 1315 aa27.02■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms