RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 HDGFP51858 240 aaKnown RBP23.88■■□□□ 1.41
RTN3-211ENST00000542238 ROBO1Q9Y6N7 1651 aa23.87■■□□□ 1.41
RTN3-211ENST00000542238 MYO5BQ9ULV0 1848 aa23.87■■□□□ 1.41
RTN3-211ENST00000542238 NWD1Q149M9 1564 aa23.86■■□□□ 1.41
RTN3-211ENST00000542238 RBM33Q96EV2 1170 aaKnown RBP23.86■■□□□ 1.41
RTN3-211ENST00000542238 PPP1R15AO75807 674 aaPredicted RBP23.85■■□□□ 1.41
RTN3-211ENST00000542238 GCC2Q8IWJ2 1684 aa23.85■■□□□ 1.41
RTN3-211ENST00000542238 MSH6P52701 1360 aa23.84■■□□□ 1.41
RTN3-211ENST00000542238 PLEKHG1Q9ULL1 1385 aa23.82■■□□□ 1.4
RTN3-211ENST00000542238 RGS17Q9UGC6 210 aaPredicted RBP23.82■■□□□ 1.4
RTN3-211ENST00000542238 ZFYVE9O95405 1425 aa23.82■■□□□ 1.4
RTN3-211ENST00000542238 CHD2O14647 1828 aaKnown RBP23.82■■□□□ 1.4
RTN3-211ENST00000542238 RIMS2Q9UQ26 1411 aa23.81■■□□□ 1.4
RTN3-211ENST00000542238 TMEM131LA2VDJ0 1609 aa23.81■■□□□ 1.4
RTN3-211ENST00000542238 UNC13BO14795 1591 aa23.79■■□□□ 1.4
RTN3-211ENST00000542238 CHGAP10645 457 aaKnown RBP23.78■■□□□ 1.4
RTN3-211ENST00000542238 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.78■■□□□ 1.4
RTN3-211ENST00000542238 SLAIN2Q9P270 581 aa23.78■■□□□ 1.4
RTN3-211ENST00000542238 PHLPP1O60346 1717 aa23.76■■□□□ 1.39
RTN3-211ENST00000542238 TBX22Q9Y458 520 aa23.75■■□□□ 1.39
RTN3-211ENST00000542238 E9PCH4 1651 aa23.75■■□□□ 1.39
RTN3-211ENST00000542238 C14orf37Q86TY3 774 aa23.72■■□□□ 1.39
RTN3-211ENST00000542238 ROCK1Q13464 1354 aa23.72■■□□□ 1.39
RTN3-211ENST00000542238 IQGAP3Q86VI3 1631 aa23.71■■□□□ 1.39
RTN3-211ENST00000542238 NCOA3Q9Y6Q9 1424 aa23.71■■□□□ 1.39
RTN3-211ENST00000542238 JCADQ9P266 1359 aa23.69■■□□□ 1.38
RTN3-211ENST00000542238 NUTM2DQ5VT03 806 aaPredicted RBP23.69■■□□□ 1.38
RTN3-211ENST00000542238 POTEAQ6S8J7 498 aa23.69■■□□□ 1.38
RTN3-211ENST00000542238 DIP2AQ14689 1571 aa23.69■■□□□ 1.38
RTN3-211ENST00000542238 NUP155O75694 1391 aa23.66■■□□□ 1.38
RTN3-211ENST00000542238 PIK3R4Q99570 1358 aa23.66■■□□□ 1.38
RTN3-211ENST00000542238 ADAMTS13Q76LX8 1427 aa23.66■■□□□ 1.38
RTN3-211ENST00000542238 CADPS2Q86UW7 1296 aa23.64■■□□□ 1.37
RTN3-211ENST00000542238 C19orf44Q9H6X5 657 aa23.64■■□□□ 1.37
RTN3-211ENST00000542238 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.64■■□□□ 1.37
RTN3-211ENST00000542238 ATF3P18847 181 aa23.63■■□□□ 1.37
RTN3-211ENST00000542238 ITGAEP38570 1179 aa23.63■■□□□ 1.37
RTN3-211ENST00000542238 TRPM2O94759 1503 aa23.63■■□□□ 1.37
RTN3-211ENST00000542238 COL16A1Q07092 1604 aaPredicted RBP23.62■■□□□ 1.37
RTN3-211ENST00000542238 AMOTL2Q9Y2J4 779 aa23.59■■□□□ 1.37
RTN3-211ENST00000542238 SPATA31A6Q5VVP1 1343 aa23.58■■□□□ 1.36
RTN3-211ENST00000542238 SPHKAPQ2M3C7 1700 aa23.56■■□□□ 1.36
RTN3-211ENST00000542238 AHDC1Q5TGY3 1603 aaPredicted RBP23.56■■□□□ 1.36
RTN3-211ENST00000542238 MEX3CQ5U5Q3 659 aaKnown RBP23.56■■□□□ 1.36
RTN3-211ENST00000542238 ZNF326Q5BKZ1 582 aaKnown RBP23.54■■□□□ 1.36
RTN3-211ENST00000542238 PTPRUQ92729 1446 aa23.53■■□□□ 1.36
RTN3-211ENST00000542238 SHPRHQ149N8 1683 aa23.53■■□□□ 1.36
RTN3-211ENST00000542238 SETD1AO15047 1707 aaKnown RBP23.52■■□□□ 1.36
RTN3-211ENST00000542238 ZNF772Q68DY9 489 aaPredicted RBP23.51■■□□□ 1.35
RTN3-211ENST00000542238 SETBP1Q9Y6X0 1596 aa23.51■■□□□ 1.35
RTN3-211ENST00000542238 LRP6O75581 1613 aa23.51■■□□□ 1.35
RTN3-211ENST00000542238 DCCP43146 1447 aa23.5■■□□□ 1.35
RTN3-211ENST00000542238 NRXN3Q9Y4C0 1643 aa23.5■■□□□ 1.35
RTN3-211ENST00000542238 XRN1Q8IZH2 1706 aaKnown RBP23.5■■□□□ 1.35
RTN3-211ENST00000542238 BRINP3Q76B58 766 aa23.49■■□□□ 1.35
RTN3-211ENST00000542238 PPARGC1BQ86YN6 1023 aaKnown RBP23.49■■□□□ 1.35
RTN3-211ENST00000542238 ASXL1Q8IXJ9 1541 aa23.43■■□□□ 1.34
RTN3-211ENST00000542238 METP08581 1390 aa23.43■■□□□ 1.34
RTN3-211ENST00000542238 KIF1BO60333 1816 aa23.43■■□□□ 1.34
RTN3-211ENST00000542238 CLTCL1P53675 1640 aa23.42■■□□□ 1.34
RTN3-211ENST00000542238 NUTM2BA6NNL0 878 aaPredicted RBP23.42■■□□□ 1.34
RTN3-211ENST00000542238 NUTM2EB1AL46 878 aaPredicted RBP23.42■■□□□ 1.34
RTN3-211ENST00000542238 NUTM2AQ8IVF1 878 aaPredicted RBP23.42■■□□□ 1.34
RTN3-211ENST00000542238 MST1RQ04912 1400 aa23.42■■□□□ 1.34
RTN3-211ENST00000542238 NEXMIFQ5QGS0 1516 aa23.4■■□□□ 1.34
RTN3-211ENST00000542238 TRIM52Q96A61 297 aa23.4■■□□□ 1.34
RTN3-211ENST00000542238 NHSL1Q5SYE7 1610 aa23.4■■□□□ 1.34
RTN3-211ENST00000542238 LRRC59Q96AG4 307 aaKnown RBP23.39■■□□□ 1.33
RTN3-211ENST00000542238 SETD5Q9C0A6 1442 aa23.39■■□□□ 1.33
RTN3-211ENST00000542238 RXRBP28702 533 aa23.38■■□□□ 1.33
RTN3-211ENST00000542238 ADGRL3Q9HAR2 1447 aa23.38■■□□□ 1.33
RTN3-211ENST00000542238 NALCNQ8IZF0 1738 aa23.36■■□□□ 1.33
RTN3-211ENST00000542238 NAIPQ13075 1403 aa23.33■■□□□ 1.33
RTN3-211ENST00000542238 VGFO15240 615 aaPredicted RBP23.33■■□□□ 1.33
RTN3-211ENST00000542238 UPF1Q92900 1129 aaKnown RBP eCLIP23.33■■□□□ 1.33
RTN3-211ENST00000542238 RRBP1Q9P2E9 1410 aaKnown RBP23.33■■□□□ 1.32
RTN3-211ENST00000542238 AFF2P51816 1311 aa23.33■■□□□ 1.32
RTN3-211ENST00000542238 CDK12Q9NYV4 1490 aaPredicted RBP23.3■■□□□ 1.32
RTN3-211ENST00000542238 DDX17Q92841 729 aaKnown RBP23.3■■□□□ 1.32
RTN3-211ENST00000542238 PNPLA6Q8IY17 1366 aa23.28■■□□□ 1.32
RTN3-211ENST00000542238 PTCH1Q13635 1447 aa23.28■■□□□ 1.32
RTN3-211ENST00000542238 C8orf37Q96NL8 207 aa23.28■■□□□ 1.32
RTN3-211ENST00000542238 C1orf167Q5SNV9 1468 aa23.28■■□□□ 1.32
RTN3-211ENST00000542238 RPGRIP1LQ68CZ1 1315 aa23.28■■□□□ 1.32
RTN3-211ENST00000542238 SLC4A1APQ9BWU0 796 aaKnown RBP23.25■■□□□ 1.31
RTN3-211ENST00000542238 QTRT2Q9H974 415 aaKnown RBP23.24■■□□□ 1.31
RTN3-211ENST00000542238 LAMC1P11047 1609 aa23.23■■□□□ 1.31
RTN3-211ENST00000542238 PPLO60437 1756 aa23.23■■□□□ 1.31
RTN3-211ENST00000542238 ROBO2Q9HCK4 1378 aa23.23■■□□□ 1.31
RTN3-211ENST00000542238 HFM1A2PYH4 1435 aa23.23■■□□□ 1.31
RTN3-211ENST00000542238 RBM6P78332 1123 aaKnown RBP23.22■■□□□ 1.31
RTN3-211ENST00000542238 NGLY1Q96IV0 654 aa23.22■■□□□ 1.31
RTN3-211ENST00000542238 ORAI2Q96SN7 254 aa23.21■■□□□ 1.31
RTN3-211ENST00000542238 PRAG1Q86YV5 1406 aa23.2■■□□□ 1.3
RTN3-211ENST00000542238 ADAMTS2O95450 1211 aa23.2■■□□□ 1.3
RTN3-211ENST00000542238 SOS2Q07890 1332 aaPredicted RBP23.19■■□□□ 1.3
RTN3-211ENST00000542238 RGS12O14924 1447 aa23.16■■□□□ 1.3
RTN3-211ENST00000542238 USP21Q9UK80 565 aa23.13■■□□□ 1.29
RTN3-211ENST00000542238 ESCO1Q5FWF5 840 aa23.12■■□□□ 1.29
RTN3-211ENST00000542238 CDC42BPGQ6DT37 1551 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms