RNA–Protein interactions for RNA: ENST00000541963.5

CPSF7-220, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4 BASIC

Gene CPSF7, Length 549 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-220ENST00000541963 PHOX2BQ99453 314 aa9.33□□□□□ -0.92
CPSF7-220ENST00000541963 TMUB1Q9BVT8 246 aa9.33□□□□□ -0.92
CPSF7-220ENST00000541963 REPIN1Q9BWE0 567 aaKnown RBP9.33□□□□□ -0.92
CPSF7-220ENST00000541963 GOPCQ9HD26 462 aa9.33□□□□□ -0.92
CPSF7-220ENST00000541963 ERBB3P21860 1342 aa9.32□□□□□ -0.92
CPSF7-220ENST00000541963 LHX8Q68G74 356 aa9.32□□□□□ -0.92
CPSF7-220ENST00000541963 KCNK17Q96T54 332 aa9.32□□□□□ -0.92
CPSF7-220ENST00000541963 TRIM6-TRIM34B2RNG4 842 aa9.3□□□□□ -0.92
CPSF7-220ENST00000541963 ONECUT3O60422 494 aaPredicted RBP9.3□□□□□ -0.92
CPSF7-220ENST00000541963 BEGAINQ9BUH8 593 aa9.3□□□□□ -0.92
CPSF7-220ENST00000541963 FAM217BQ9NTX9 383 aaPredicted RBP9.3□□□□□ -0.92
CPSF7-220ENST00000541963 PNMA3Q9UL41 463 aa9.3□□□□□ -0.92
CPSF7-220ENST00000541963 NUDT18Q6ZVK8 323 aa9.29□□□□□ -0.92
CPSF7-220ENST00000541963 NLRP7Q8WX94 980 aa9.29□□□□□ -0.92
CPSF7-220ENST00000541963 TOPBP1Q92547 1522 aa9.29□□□□□ -0.92
CPSF7-220ENST00000541963 RCCD1A6NED2 376 aa9.28□□□□□ -0.92
CPSF7-220ENST00000541963 DIXDC1Q155Q3 683 aa9.28□□□□□ -0.92
CPSF7-220ENST00000541963 SULF1Q8IWU6 871 aa9.28□□□□□ -0.92
CPSF7-220ENST00000541963 TATDN2Q93075 761 aa9.28□□□□□ -0.92
CPSF7-220ENST00000541963 TSKSQ9UJT2 592 aa9.28□□□□□ -0.92
CPSF7-220ENST00000541963 IFT140Q96RY7 1462 aa9.28□□□□□ -0.92
CPSF7-220ENST00000541963 DNAJB2P25686 324 aa9.27□□□□□ -0.93
CPSF7-220ENST00000541963 SH3D19Q5HYK7 790 aa9.27□□□□□ -0.93
CPSF7-220ENST00000541963 RSPH4AQ5TD94 716 aa9.27□□□□□ -0.93
CPSF7-220ENST00000541963 EYA1Q99502 592 aa9.27□□□□□ -0.93
CPSF7-220ENST00000541963 DNMBPQ6XZF7 1577 aa9.27□□□□□ -0.93
CPSF7-220ENST00000541963 FAM198AQ9UFP1 575 aa9.26□□□□□ -0.93
CPSF7-220ENST00000541963 ARHGAP33O14559 1287 aa9.25□□□□□ -0.93
CPSF7-220ENST00000541963 HDGFP51858 240 aaKnown RBP9.25□□□□□ -0.93
CPSF7-220ENST00000541963 SKIV2LQ15477 1246 aaKnown RBP9.25□□□□□ -0.93
CPSF7-220ENST00000541963 VARS2Q5ST30 1063 aaKnown RBP9.25□□□□□ -0.93
CPSF7-220ENST00000541963 SLC4A3P48751 1232 aa9.24□□□□□ -0.93
CPSF7-220ENST00000541963 EMP3P54852 163 aa9.24□□□□□ -0.93
CPSF7-220ENST00000541963 PROX2Q3B8N5 592 aa9.23□□□□□ -0.93
CPSF7-220ENST00000541963 KIAA1468Q9P260 1216 aa9.23□□□□□ -0.93
CPSF7-220ENST00000541963 DDX11L8A8MPP1 907 aa9.22□□□□□ -0.93
CPSF7-220ENST00000541963 PBX2P40425 430 aa9.22□□□□□ -0.93
CPSF7-220ENST00000541963 PSEN2P49810 448 aa9.22□□□□□ -0.93
CPSF7-220ENST00000541963 FLIIQ13045 1269 aa9.22□□□□□ -0.93
CPSF7-220ENST00000541963 NUTM1Q86Y26 1132 aa9.22□□□□□ -0.93
CPSF7-220ENST00000541963 SOGA1O94964 1423 aa9.22□□□□□ -0.93
CPSF7-220ENST00000541963 ST18O60284 1047 aa9.21□□□□□ -0.94
CPSF7-220ENST00000541963 ZBED2Q9BTP6 218 aa9.21□□□□□ -0.94
CPSF7-220ENST00000541963 POLR3EQ9NVU0 708 aa9.21□□□□□ -0.94
CPSF7-220ENST00000541963 SMAPO00193 183 aa9.2□□□□□ -0.94
CPSF7-220ENST00000541963 RDH13Q8NBN7 331 aa9.2□□□□□ -0.94
CPSF7-220ENST00000541963 SLC4A5Q9BY07 1137 aa9.2□□□□□ -0.94
CPSF7-220ENST00000541963 TBC1D2Q9BYX2 928 aa9.2□□□□□ -0.94
CPSF7-220ENST00000541963 TMEM134Q9H6X4 195 aa9.2□□□□□ -0.94
CPSF7-220ENST00000541963 RABGEF1Q9UJ41 708 aa9.2□□□□□ -0.94
CPSF7-220ENST00000541963 POLA1P09884 1462 aaPredicted RBP9.2□□□□□ -0.94
CPSF7-220ENST00000541963 ZNF608Q9ULD9 1512 aaPredicted RBP9.19□□□□□ -0.94
CPSF7-220ENST00000541963 FAM205CA6NFA0 338 aa9.18□□□□□ -0.94
CPSF7-220ENST00000541963 CD46P15529 392 aa9.18□□□□□ -0.94
CPSF7-220ENST00000541963 MYSM1Q5VVJ2 828 aa9.18□□□□□ -0.94
CPSF7-220ENST00000541963 MARVELD3Q96A59 401 aa9.18□□□□□ -0.94
CPSF7-220ENST00000541963 FAM163AQ96GL9 167 aaPredicted RBP9.18□□□□□ -0.94
CPSF7-220ENST00000541963 CUX1P39880 1505 aa9.17□□□□□ -0.94
CPSF7-220ENST00000541963 FGD5Q6ZNL6 1462 aa9.17□□□□□ -0.94
CPSF7-220ENST00000541963 CLK2P49760 499 aaKnown RBP9.17□□□□□ -0.94
CPSF7-220ENST00000541963 ZNF687Q8N1G0 1237 aa9.17□□□□□ -0.94
CPSF7-220ENST00000541963 TARBP1Q13395 1621 aaKnown RBP9.16□□□□□ -0.94
CPSF7-220ENST00000541963 RAD54L2Q9Y4B4 1467 aa9.16□□□□□ -0.94
CPSF7-220ENST00000541963 ZMYND15Q9H091 742 aa9.16□□□□□ -0.94
CPSF7-220ENST00000541963 NBPF3Q9H094 633 aa9.16□□□□□ -0.94
CPSF7-220ENST00000541963 AXIN2Q9Y2T1 843 aa9.16□□□□□ -0.94
CPSF7-220ENST00000541963 AQRO60306 1485 aaKnown RBP eCLIP9.15□□□□□ -0.943e-7■■■■■ 40.5
CPSF7-220ENST00000541963 C3orf80F5H4A9 247 aa9.15□□□□□ -0.94
CPSF7-220ENST00000541963 PROCA1Q8NCQ7 364 aaPredicted RBP9.15□□□□□ -0.94
CPSF7-220ENST00000541963 SPIRE2Q8WWL2 714 aa9.15□□□□□ -0.94
CPSF7-220ENST00000541963 WRNQ14191 1432 aaPredicted RBP eCLIP9.14□□□□□ -0.95
CPSF7-220ENST00000541963 TDRD9Q8NDG6 1382 aaKnown RBP9.14□□□□□ -0.95
CPSF7-220ENST00000541963 WDR97A6NE52 1622 aa9.14□□□□□ -0.95
CPSF7-220ENST00000541963 FAM98CQ17RN3 349 aaKnown RBP9.14□□□□□ -0.95
CPSF7-220ENST00000541963 RIC3Q7Z5B4 369 aa9.14□□□□□ -0.95
CPSF7-220ENST00000541963 EIF4G3O43432 1585 aaKnown RBP9.14□□□□□ -0.95
CPSF7-220ENST00000541963 DMRTA1Q5VZB9 504 aa9.13□□□□□ -0.95
CPSF7-220ENST00000541963 STAC3Q96MF2 364 aa9.13□□□□□ -0.95
CPSF7-220ENST00000541963 SEPT9Q9UHD8 586 aaPredicted RBP9.13□□□□□ -0.95
CPSF7-220ENST00000541963 VPS9D1Q9Y2B5 631 aa9.13□□□□□ -0.95
CPSF7-220ENST00000541963 USP46P62068 366 aa9.12□□□□□ -0.95
CPSF7-220ENST00000541963 SWT1Q5T5J6 900 aaKnown RBP9.12□□□□□ -0.95
CPSF7-220ENST00000541963 LAPTM4BQ86VI4 370 aa9.12□□□□□ -0.95
CPSF7-220ENST00000541963 SLF2Q8IX21 1173 aa9.12□□□□□ -0.95
CPSF7-220ENST00000541963 KDM4AO75164 1064 aa9.11□□□□□ -0.95
CPSF7-220ENST00000541963 CHMP7Q8WUX9 453 aaPredicted RBP9.11□□□□□ -0.95
CPSF7-220ENST00000541963 TK2O00142 265 aa9.1□□□□□ -0.95
CPSF7-220ENST00000541963 POTEEQ6S8J3 1075 aa9.1□□□□□ -0.95
CPSF7-220ENST00000541963 NECTIN2Q92692 538 aa9.1□□□□□ -0.95
CPSF7-220ENST00000541963 HS3ST6Q96QI5 342 aa9.1□□□□□ -0.95
CPSF7-220ENST00000541963 TOP2BQ02880 1626 aa9.09□□□□□ -0.95
CPSF7-220ENST00000541963 GRIN2BQ13224 1484 aa9.09□□□□□ -0.95
CPSF7-220ENST00000541963 SPTLC1O15269 473 aa9.09□□□□□ -0.95
CPSF7-220ENST00000541963 GJA5P36382 358 aa9.09□□□□□ -0.95
CPSF7-220ENST00000541963 GCGRP47871 477 aa9.09□□□□□ -0.95
CPSF7-220ENST00000541963 GRIPAP1Q4V328 841 aa9.09□□□□□ -0.95
CPSF7-220ENST00000541963 TMEM259Q4ZIN3 620 aa9.09□□□□□ -0.95
CPSF7-220ENST00000541963 MRPL50Q8N5N7 158 aaKnown RBP9.09□□□□□ -0.95
CPSF7-220ENST00000541963 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.09□□□□□ -0.95
CPSF7-220ENST00000541963 ABCA10Q8WWZ4 1543 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms