RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 TMEM131LA2VDJ0 1609 aa18.08■□□□□ 0.48
CLSTN3-211ENST00000541667 IQGAP3Q86VI3 1631 aa18.08■□□□□ 0.48
CLSTN3-211ENST00000541667 MYO5BQ9ULV0 1848 aa18.06■□□□□ 0.48
CLSTN3-211ENST00000541667 RIMS2Q9UQ26 1411 aa18.05■□□□□ 0.48
CLSTN3-211ENST00000541667 PLEKHG1Q9ULL1 1385 aa18.04■□□□□ 0.48
CLSTN3-211ENST00000541667 RBM33Q96EV2 1170 aaKnown RBP18.03■□□□□ 0.48
CLSTN3-211ENST00000541667 TMEM94Q12767 1356 aa18.03■□□□□ 0.48
CLSTN3-211ENST00000541667 SENP3Q9H4L4 574 aaPredicted RBP18.02■□□□□ 0.48
CLSTN3-211ENST00000541667 TBX22Q9Y458 520 aa18.02■□□□□ 0.48
CLSTN3-211ENST00000541667 NAIPQ13075 1403 aa18.01■□□□□ 0.47
CLSTN3-211ENST00000541667 HDGFP51858 240 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-211ENST00000541667 PROSER2Q86WR7 435 aaPredicted RBP18.01■□□□□ 0.47
CLSTN3-211ENST00000541667 CHGAP10645 457 aaKnown RBP18■□□□□ 0.47
CLSTN3-211ENST00000541667 NUTM2DQ5VT03 806 aaPredicted RBP18■□□□□ 0.47
CLSTN3-211ENST00000541667 ADAMTS13Q76LX8 1427 aa17.99■□□□□ 0.47
CLSTN3-211ENST00000541667 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.99■□□□□ 0.47
CLSTN3-211ENST00000541667 NWD1Q149M9 1564 aa17.99■□□□□ 0.47
CLSTN3-211ENST00000541667 BCANQ96GW7 911 aa17.98■□□□□ 0.47
CLSTN3-211ENST00000541667 SOCS7O14512 581 aa17.97■□□□□ 0.47
CLSTN3-211ENST00000541667 FAM135BQ49AJ0 1406 aa17.97■□□□□ 0.47
CLSTN3-211ENST00000541667 CHD2O14647 1828 aaKnown RBP17.95■□□□□ 0.46
CLSTN3-211ENST00000541667 PPP1R15AO75807 674 aaPredicted RBP17.95■□□□□ 0.46
CLSTN3-211ENST00000541667 NKTRP30414 1462 aaKnown RBP17.95■□□□□ 0.46
CLSTN3-211ENST00000541667 MED1Q15648 1581 aaPredicted RBP17.93■□□□□ 0.46
CLSTN3-211ENST00000541667 HFM1A2PYH4 1435 aa17.9■□□□□ 0.46
CLSTN3-211ENST00000541667 PTPRUQ92729 1446 aa17.9■□□□□ 0.46
CLSTN3-211ENST00000541667 PIK3R4Q99570 1358 aa17.9■□□□□ 0.46
CLSTN3-211ENST00000541667 SPHKAPQ2M3C7 1700 aa17.89■□□□□ 0.46
CLSTN3-211ENST00000541667 SLAIN2Q9P270 581 aa17.89■□□□□ 0.45
CLSTN3-211ENST00000541667 NCOA3Q9Y6Q9 1424 aa17.89■□□□□ 0.45
CLSTN3-211ENST00000541667 AMOTL2Q9Y2J4 779 aa17.87■□□□□ 0.45
CLSTN3-211ENST00000541667 MSH6P52701 1360 aa17.87■□□□□ 0.45
CLSTN3-211ENST00000541667 NRXN3Q9Y4C0 1643 aa17.87■□□□□ 0.45
CLSTN3-211ENST00000541667 DIP2AQ14689 1571 aa17.86■□□□□ 0.45
CLSTN3-211ENST00000541667 CLTCL1P53675 1640 aa17.86■□□□□ 0.45
CLSTN3-211ENST00000541667 TRPM2O94759 1503 aa17.85■□□□□ 0.45
CLSTN3-211ENST00000541667 RGS17Q9UGC6 210 aaPredicted RBP17.85■□□□□ 0.45
CLSTN3-211ENST00000541667 ROBO1Q9Y6N7 1651 aa17.84■□□□□ 0.45
CLSTN3-211ENST00000541667 METP08581 1390 aa17.84■□□□□ 0.45
CLSTN3-211ENST00000541667 ZNF326Q5BKZ1 582 aaKnown RBP17.84■□□□□ 0.45
CLSTN3-211ENST00000541667 TRIM52Q96A61 297 aa17.84■□□□□ 0.45
CLSTN3-211ENST00000541667 SETBP1Q9Y6X0 1596 aa17.83■□□□□ 0.45
CLSTN3-211ENST00000541667 C19orf44Q9H6X5 657 aa17.83■□□□□ 0.44
CLSTN3-211ENST00000541667 SLC4A1APQ9BWU0 796 aaKnown RBP17.82■□□□□ 0.44
CLSTN3-211ENST00000541667 NEXMIFQ5QGS0 1516 aa17.82■□□□□ 0.44
CLSTN3-211ENST00000541667 FOXD1Q16676 465 aa17.79■□□□□ 0.44
CLSTN3-211ENST00000541667 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.78■□□□□ 0.44
CLSTN3-211ENST00000541667 CADPS2Q86UW7 1296 aa17.78■□□□□ 0.44
CLSTN3-211ENST00000541667 PHF23Q9BUL5 403 aaPredicted RBP17.77■□□□□ 0.44
CLSTN3-211ENST00000541667 XRN1Q8IZH2 1706 aaKnown RBP17.77■□□□□ 0.44
CLSTN3-211ENST00000541667 C14orf37Q86TY3 774 aa17.76■□□□□ 0.43
CLSTN3-211ENST00000541667 KIF1BO60333 1816 aa17.75■□□□□ 0.43
CLSTN3-211ENST00000541667 ATF3P18847 181 aa17.75■□□□□ 0.43
CLSTN3-211ENST00000541667 MPHOSPH9Q99550 1183 aa17.75■□□□□ 0.43
CLSTN3-211ENST00000541667 RPGRIP1LQ68CZ1 1315 aa17.74■□□□□ 0.43
CLSTN3-211ENST00000541667 VGFO15240 615 aaPredicted RBP17.74■□□□□ 0.43
CLSTN3-211ENST00000541667 BRINP3Q76B58 766 aa17.73■□□□□ 0.43
CLSTN3-211ENST00000541667 POTEAQ6S8J7 498 aa17.71■□□□□ 0.43
CLSTN3-211ENST00000541667 PHLPP1O60346 1717 aa17.71■□□□□ 0.43
CLSTN3-211ENST00000541667 COL16A1Q07092 1604 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-211ENST00000541667 SETD1AO15047 1707 aaKnown RBP17.7■□□□□ 0.42
CLSTN3-211ENST00000541667 JCADQ9P266 1359 aa17.7■□□□□ 0.42
CLSTN3-211ENST00000541667 DCCP43146 1447 aa17.7■□□□□ 0.42
CLSTN3-211ENST00000541667 MST1RQ04912 1400 aa17.69■□□□□ 0.42
CLSTN3-211ENST00000541667 SPATA31E1Q6ZUB1 1445 aa17.69■□□□□ 0.42
CLSTN3-211ENST00000541667 ROBO2Q9HCK4 1378 aa17.68■□□□□ 0.42
CLSTN3-211ENST00000541667 AHDC1Q5TGY3 1603 aaPredicted RBP17.68■□□□□ 0.42
CLSTN3-211ENST00000541667 ADGRF5Q8IZF2 1346 aa17.68■□□□□ 0.42
CLSTN3-211ENST00000541667 PPLO60437 1756 aa17.66■□□□□ 0.42
CLSTN3-211ENST00000541667 PRAG1Q86YV5 1406 aa17.66■□□□□ 0.42
CLSTN3-211ENST00000541667 ADGRL3Q9HAR2 1447 aa17.66■□□□□ 0.42
CLSTN3-211ENST00000541667 RGL3Q3MIN7 710 aa17.65■□□□□ 0.42
CLSTN3-211ENST00000541667 SETD5Q9C0A6 1442 aa17.64■□□□□ 0.42
CLSTN3-211ENST00000541667 CCDC144AA2RUR9 1427 aa17.64■□□□□ 0.41
CLSTN3-211ENST00000541667 PTCH1Q13635 1447 aa17.64■□□□□ 0.41
CLSTN3-211ENST00000541667 LRP6O75581 1613 aa17.63■□□□□ 0.41
CLSTN3-211ENST00000541667 DDX17Q92841 729 aaKnown RBP17.63■□□□□ 0.41
CLSTN3-211ENST00000541667 ASXL1Q8IXJ9 1541 aa17.62■□□□□ 0.41
CLSTN3-211ENST00000541667 NALCNQ8IZF0 1738 aa17.62■□□□□ 0.41
CLSTN3-211ENST00000541667 SPATA31A6Q5VVP1 1343 aa17.62■□□□□ 0.41
CLSTN3-211ENST00000541667 C1orf167Q5SNV9 1468 aa17.6■□□□□ 0.41
CLSTN3-211ENST00000541667 ACIN1Q9UKV3 1341 aaKnown RBP17.59■□□□□ 0.41
CLSTN3-211ENST00000541667 ANKRD30BQ9BXX2 1392 aa17.58■□□□□ 0.4
CLSTN3-211ENST00000541667 RAB3GAP2Q9H2M9 1393 aa17.58■□□□□ 0.4
CLSTN3-211ENST00000541667 ORAI2Q96SN7 254 aa17.58■□□□□ 0.4
CLSTN3-211ENST00000541667 SHPRHQ149N8 1683 aa17.58■□□□□ 0.4
CLSTN3-211ENST00000541667 NHSL1Q5SYE7 1610 aa17.58■□□□□ 0.4
CLSTN3-211ENST00000541667 TMEM132EQ6IEE7 984 aa17.57■□□□□ 0.4
CLSTN3-211ENST00000541667 IFT172Q9UG01 1749 aa17.57■□□□□ 0.4
CLSTN3-211ENST00000541667 WAPLQ7Z5K2 1190 aa17.56■□□□□ 0.4
CLSTN3-211ENST00000541667 LRRC59Q96AG4 307 aaKnown RBP17.56■□□□□ 0.4
CLSTN3-211ENST00000541667 PIK3C2GO75747 1445 aa17.55■□□□□ 0.4
CLSTN3-211ENST00000541667 ABCC11Q96J66 1382 aa17.55■□□□□ 0.4
CLSTN3-211ENST00000541667 C14orf93Q9H972 538 aaKnown RBP17.55■□□□□ 0.4
CLSTN3-211ENST00000541667 TECPR2O15040 1411 aa17.55■□□□□ 0.4
CLSTN3-211ENST00000541667 LRPPRCP42704 1394 aaKnown RBP17.54■□□□□ 0.4
CLSTN3-211ENST00000541667 SOS2Q07890 1332 aaPredicted RBP17.54■□□□□ 0.4
CLSTN3-211ENST00000541667 STK26Q9P289 416 aa17.54■□□□□ 0.4
CLSTN3-211ENST00000541667 LAMC1P11047 1609 aa17.53■□□□□ 0.4
CLSTN3-211ENST00000541667 PNPLA6Q8IY17 1366 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms