RNA–Protein interactions for RNA: ENST00000541171.1

LEMD3-203, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 856 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-203ENST00000541171 ITGAEP38570 1179 aa36.88■■■■□ 3.49
LEMD3-203ENST00000541171 PPP1R15AO75807 674 aaPredicted RBP36.87■■■■□ 3.49
LEMD3-203ENST00000541171 PPARGC1BQ86YN6 1023 aaKnown RBP36.86■■■■□ 3.49
LEMD3-203ENST00000541171 RIMS2Q9UQ26 1411 aa36.83■■■■□ 3.49
LEMD3-203ENST00000541171 HDGFP51858 240 aaKnown RBP36.82■■■■□ 3.48
LEMD3-203ENST00000541171 UNC13BO14795 1591 aa36.82■■■■□ 3.48
LEMD3-203ENST00000541171 ROCK1Q13464 1354 aa36.81■■■■□ 3.48
LEMD3-203ENST00000541171 ZFYVE9O95405 1425 aa36.8■■■■□ 3.48
LEMD3-203ENST00000541171 FAM135BQ49AJ0 1406 aa36.79■■■■□ 3.48
LEMD3-203ENST00000541171 MYO5BQ9ULV0 1848 aa36.79■■■■□ 3.48
LEMD3-203ENST00000541171 GCC2Q8IWJ2 1684 aa36.79■■■■□ 3.48
LEMD3-203ENST00000541171 PLEKHG1Q9ULL1 1385 aa36.78■■■■□ 3.48
LEMD3-203ENST00000541171 NUTM2DQ5VT03 806 aaPredicted RBP36.76■■■■□ 3.48
LEMD3-203ENST00000541171 TMEM131LA2VDJ0 1609 aa36.76■■■■□ 3.48
LEMD3-203ENST00000541171 NKTRP30414 1462 aaKnown RBP36.75■■■■□ 3.47
LEMD3-203ENST00000541171 NUP155O75694 1391 aa36.74■■■■□ 3.47
LEMD3-203ENST00000541171 NWD1Q149M9 1564 aa36.74■■■■□ 3.47
LEMD3-203ENST00000541171 E9PCH4 1651 aa36.73■■■■□ 3.47
LEMD3-203ENST00000541171 ABCF1Q8NE71 845 aaKnown RBP eCLIP36.72■■■■□ 3.47
LEMD3-203ENST00000541171 MSH6P52701 1360 aa36.7■■■■□ 3.47
LEMD3-203ENST00000541171 IQGAP3Q86VI3 1631 aa36.68■■■■□ 3.46
LEMD3-203ENST00000541171 TBX22Q9Y458 520 aa36.68■■■■□ 3.46
LEMD3-203ENST00000541171 ROBO1Q9Y6N7 1651 aa36.66■■■■□ 3.46
LEMD3-203ENST00000541171 SLAIN2Q9P270 581 aa36.63■■■■□ 3.45
LEMD3-203ENST00000541171 CHD2O14647 1828 aaKnown RBP36.62■■■■□ 3.45
LEMD3-203ENST00000541171 RGS17Q9UGC6 210 aaPredicted RBP36.61■■■■□ 3.45
LEMD3-203ENST00000541171 C14orf37Q86TY3 774 aa36.6■■■■□ 3.45
LEMD3-203ENST00000541171 ADAMTS13Q76LX8 1427 aa36.59■■■■□ 3.45
LEMD3-203ENST00000541171 DIP2AQ14689 1571 aa36.49■■■■□ 3.43
LEMD3-203ENST00000541171 ZNF326Q5BKZ1 582 aaKnown RBP36.48■■■■□ 3.43
LEMD3-203ENST00000541171 AMOTL2Q9Y2J4 779 aa36.48■■■■□ 3.43
LEMD3-203ENST00000541171 PIK3R4Q99570 1358 aa36.48■■■■□ 3.43
LEMD3-203ENST00000541171 NCOA3Q9Y6Q9 1424 aa36.48■■■■□ 3.43
LEMD3-203ENST00000541171 PHLPP1O60346 1717 aa36.45■■■■□ 3.43
LEMD3-203ENST00000541171 ATF3P18847 181 aa36.44■■■■□ 3.42
LEMD3-203ENST00000541171 C19orf44Q9H6X5 657 aa36.44■■■■□ 3.42
LEMD3-203ENST00000541171 TRPM2O94759 1503 aa36.43■■■■□ 3.42
LEMD3-203ENST00000541171 POTEAQ6S8J7 498 aa36.42■■■■□ 3.42
LEMD3-203ENST00000541171 CADPS2Q86UW7 1296 aa36.42■■■■□ 3.42
LEMD3-203ENST00000541171 PTPRUQ92729 1446 aa36.42■■■■□ 3.42
LEMD3-203ENST00000541171 JCADQ9P266 1359 aa36.4■■■■□ 3.42
LEMD3-203ENST00000541171 SPHKAPQ2M3C7 1700 aa36.4■■■■□ 3.42
LEMD3-203ENST00000541171 SIPA1L2Q9P2F8 1722 aaPredicted RBP36.37■■■■□ 3.41
LEMD3-203ENST00000541171 RRBP1Q9P2E9 1410 aaKnown RBP36.35■■■■□ 3.41
LEMD3-203ENST00000541171 NAIPQ13075 1403 aa36.31■■■■□ 3.4
LEMD3-203ENST00000541171 COL16A1Q07092 1604 aaPredicted RBP36.3■■■■□ 3.4
LEMD3-203ENST00000541171 NRXN3Q9Y4C0 1643 aa36.3■■■■□ 3.4
LEMD3-203ENST00000541171 SETBP1Q9Y6X0 1596 aa36.29■■■■□ 3.4
LEMD3-203ENST00000541171 TRIM52Q96A61 297 aa36.29■■■■□ 3.4
LEMD3-203ENST00000541171 METP08581 1390 aa36.28■■■■□ 3.4
LEMD3-203ENST00000541171 CLTCL1P53675 1640 aa36.27■■■■□ 3.4
LEMD3-203ENST00000541171 BRINP3Q76B58 766 aa36.25■■■■□ 3.39
LEMD3-203ENST00000541171 MEX3CQ5U5Q3 659 aaKnown RBP36.23■■■■□ 3.39
LEMD3-203ENST00000541171 XRN1Q8IZH2 1706 aaKnown RBP36.22■■■■□ 3.39
LEMD3-203ENST00000541171 NEXMIFQ5QGS0 1516 aa36.21■■■■□ 3.39
LEMD3-203ENST00000541171 AHDC1Q5TGY3 1603 aaPredicted RBP36.21■■■■□ 3.39
LEMD3-203ENST00000541171 SPATA31A6Q5VVP1 1343 aa36.21■■■■□ 3.39
LEMD3-203ENST00000541171 DCCP43146 1447 aa36.18■■■■□ 3.38
LEMD3-203ENST00000541171 LRP6O75581 1613 aa36.18■■■■□ 3.38
LEMD3-203ENST00000541171 KIF1BO60333 1816 aa36.15■■■■□ 3.38
LEMD3-203ENST00000541171 SLC4A1APQ9BWU0 796 aaKnown RBP36.15■■■■□ 3.38
LEMD3-203ENST00000541171 HFM1A2PYH4 1435 aa36.13■■■■□ 3.37
LEMD3-203ENST00000541171 MST1RQ04912 1400 aa36.13■■■■□ 3.37
LEMD3-203ENST00000541171 NUTM2BA6NNL0 878 aaPredicted RBP36.12■■■■□ 3.37
LEMD3-203ENST00000541171 NUTM2EB1AL46 878 aaPredicted RBP36.12■■■■□ 3.37
LEMD3-203ENST00000541171 NUTM2AQ8IVF1 878 aaPredicted RBP36.12■■■■□ 3.37
LEMD3-203ENST00000541171 VGFO15240 615 aaPredicted RBP36.11■■■■□ 3.37
LEMD3-203ENST00000541171 ASXL1Q8IXJ9 1541 aa36.1■■■■□ 3.37
LEMD3-203ENST00000541171 ADGRL3Q9HAR2 1447 aa36.08■■■■□ 3.37
LEMD3-203ENST00000541171 SHPRHQ149N8 1683 aa36.08■■■■□ 3.37
LEMD3-203ENST00000541171 ZNF772Q68DY9 489 aaPredicted RBP36.07■■■■□ 3.36
LEMD3-203ENST00000541171 DDX17Q92841 729 aaKnown RBP36.06■■■■□ 3.36
LEMD3-203ENST00000541171 FOXD1Q16676 465 aa36.03■■■■□ 3.36
LEMD3-203ENST00000541171 RPGRIP1LQ68CZ1 1315 aa36.02■■■■□ 3.36
LEMD3-203ENST00000541171 SETD1AO15047 1707 aaKnown RBP36.01■■■■□ 3.36
LEMD3-203ENST00000541171 LRRC59Q96AG4 307 aaKnown RBP36.01■■■■□ 3.36
LEMD3-203ENST00000541171 SETD5Q9C0A6 1442 aa36■■■■□ 3.35
LEMD3-203ENST00000541171 NALCNQ8IZF0 1738 aa36■■■■□ 3.35
LEMD3-203ENST00000541171 ROBO2Q9HCK4 1378 aa35.97■■■■□ 3.35
LEMD3-203ENST00000541171 NHSL1Q5SYE7 1610 aa35.97■■■■□ 3.35
LEMD3-203ENST00000541171 PTCH1Q13635 1447 aa35.94■■■■□ 3.34
LEMD3-203ENST00000541171 C1orf167Q5SNV9 1468 aa35.93■■■■□ 3.34
LEMD3-203ENST00000541171 AFF2P51816 1311 aa35.91■■■■□ 3.34
LEMD3-203ENST00000541171 RXRBP28702 533 aa35.9■■■■□ 3.34
LEMD3-203ENST00000541171 ORAI2Q96SN7 254 aa35.9■■■■□ 3.34
LEMD3-203ENST00000541171 RGL3Q3MIN7 710 aa35.89■■■■□ 3.34
LEMD3-203ENST00000541171 PNPLA6Q8IY17 1366 aa35.89■■■■□ 3.34
LEMD3-203ENST00000541171 PPLO60437 1756 aa35.88■■■■□ 3.33
LEMD3-203ENST00000541171 C8orf37Q96NL8 207 aa35.87■■■■□ 3.33
LEMD3-203ENST00000541171 ADGRF5Q8IZF2 1346 aa35.84■■■■□ 3.33
LEMD3-203ENST00000541171 CCDC144AA2RUR9 1427 aa35.84■■■■□ 3.33
LEMD3-203ENST00000541171 MPHOSPH9Q99550 1183 aa35.84■■■■□ 3.33
LEMD3-203ENST00000541171 ADAMTS2O95450 1211 aa35.8■■■■□ 3.32
LEMD3-203ENST00000541171 STK26Q9P289 416 aa35.8■■■■□ 3.32
LEMD3-203ENST00000541171 PRAG1Q86YV5 1406 aa35.8■■■■□ 3.32
LEMD3-203ENST00000541171 UPF1Q92900 1129 aaKnown RBP eCLIP35.78■■■■□ 3.32
LEMD3-203ENST00000541171 SOS2Q07890 1332 aaPredicted RBP35.77■■■■□ 3.32
LEMD3-203ENST00000541171 QTRT2Q9H974 415 aaKnown RBP35.76■■■■□ 3.32
LEMD3-203ENST00000541171 NGLY1Q96IV0 654 aa35.75■■■■□ 3.31
LEMD3-203ENST00000541171 SPATA31E1Q6ZUB1 1445 aa35.74■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms