RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 KCNA6P17658 529 aa21.72■■□□□ 1.07
SNHG1-213ENST00000540725 ZFYVE9O95405 1425 aa21.71■■□□□ 1.07
SNHG1-213ENST00000540725 NWD1Q149M9 1564 aa21.71■■□□□ 1.07
SNHG1-213ENST00000540725 TMEM94Q12767 1356 aa21.7■■□□□ 1.06
SNHG1-213ENST00000540725 NKTRP30414 1462 aaKnown RBP21.68■■□□□ 1.06
SNHG1-213ENST00000540725 BCANQ96GW7 911 aa21.68■■□□□ 1.06
SNHG1-213ENST00000540725 RIMS2Q9UQ26 1411 aa21.68■■□□□ 1.06
SNHG1-213ENST00000540725 ITGAEP38570 1179 aa21.67■■□□□ 1.06
SNHG1-213ENST00000540725 CHD2O14647 1828 aaKnown RBP21.67■■□□□ 1.06
SNHG1-213ENST00000540725 PLEKHG1Q9ULL1 1385 aa21.67■■□□□ 1.06
SNHG1-213ENST00000540725 PROSER2Q86WR7 435 aaPredicted RBP21.66■■□□□ 1.06
SNHG1-213ENST00000540725 PPARGC1BQ86YN6 1023 aaKnown RBP21.66■■□□□ 1.06
SNHG1-213ENST00000540725 PPP1R15AO75807 674 aaPredicted RBP21.64■■□□□ 1.06
SNHG1-213ENST00000540725 NUP155O75694 1391 aa21.63■■□□□ 1.05
SNHG1-213ENST00000540725 CHGAP10645 457 aaKnown RBP21.63■■□□□ 1.05
SNHG1-213ENST00000540725 HDGFP51858 240 aaKnown RBP21.63■■□□□ 1.05
SNHG1-213ENST00000540725 FAM135BQ49AJ0 1406 aa21.63■■□□□ 1.05
SNHG1-213ENST00000540725 RBM33Q96EV2 1170 aaKnown RBP21.62■■□□□ 1.05
SNHG1-213ENST00000540725 PHF23Q9BUL5 403 aaPredicted RBP21.61■■□□□ 1.05
SNHG1-213ENST00000540725 ROBO1Q9Y6N7 1651 aa21.61■■□□□ 1.05
SNHG1-213ENST00000540725 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.6■■□□□ 1.056e-32■□□□□ 8.9
SNHG1-213ENST00000540725 SPHKAPQ2M3C7 1700 aa21.58■■□□□ 1.05
SNHG1-213ENST00000540725 DIP2AQ14689 1571 aa21.57■■□□□ 1.04
SNHG1-213ENST00000540725 MSH6P52701 1360 aa21.57■■□□□ 1.04
SNHG1-213ENST00000540725 TBX22Q9Y458 520 aa21.57■■□□□ 1.04
SNHG1-213ENST00000540725 NUTM2DQ5VT03 806 aaPredicted RBP21.56■■□□□ 1.04
SNHG1-213ENST00000540725 ADAMTS13Q76LX8 1427 aa21.55■■□□□ 1.04
SNHG1-213ENST00000540725 RRBP1Q9P2E9 1410 aaKnown RBP21.52■■□□□ 1.04
SNHG1-213ENST00000540725 PIK3R4Q99570 1358 aa21.5■■□□□ 1.03
SNHG1-213ENST00000540725 PHLPP1O60346 1717 aa21.5■■□□□ 1.03
SNHG1-213ENST00000540725 TRPM2O94759 1503 aa21.5■■□□□ 1.03
SNHG1-213ENST00000540725 SLAIN2Q9P270 581 aa21.49■■□□□ 1.03
SNHG1-213ENST00000540725 NCOA3Q9Y6Q9 1424 aa21.49■■□□□ 1.03
SNHG1-213ENST00000540725 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.47■■□□□ 1.03
SNHG1-213ENST00000540725 NRXN3Q9Y4C0 1643 aa21.47■■□□□ 1.03
SNHG1-213ENST00000540725 C14orf37Q86TY3 774 aa21.46■■□□□ 1.03
SNHG1-213ENST00000540725 CLTCL1P53675 1640 aa21.46■■□□□ 1.03
SNHG1-213ENST00000540725 NAIPQ13075 1403 aa21.46■■□□□ 1.03
SNHG1-213ENST00000540725 SETBP1Q9Y6X0 1596 aa21.45■■□□□ 1.02
SNHG1-213ENST00000540725 KIF1BO60333 1816 aa21.44■■□□□ 1.02
SNHG1-213ENST00000540725 PTPRUQ92729 1446 aa21.44■■□□□ 1.02
SNHG1-213ENST00000540725 RGS17Q9UGC6 210 aaPredicted RBP21.44■■□□□ 1.02
SNHG1-213ENST00000540725 XRN1Q8IZH2 1706 aaKnown RBP21.43■■□□□ 1.02
SNHG1-213ENST00000540725 ZNF326Q5BKZ1 582 aaKnown RBP21.42■■□□□ 1.02
SNHG1-213ENST00000540725 AMOTL2Q9Y2J4 779 aa21.42■■□□□ 1.02
SNHG1-213ENST00000540725 COL16A1Q07092 1604 aaPredicted RBP21.41■■□□□ 1.02
SNHG1-213ENST00000540725 C19orf44Q9H6X5 657 aa21.4■■□□□ 1.02
SNHG1-213ENST00000540725 NEXMIFQ5QGS0 1516 aa21.4■■□□□ 1.02
SNHG1-213ENST00000540725 CADPS2Q86UW7 1296 aa21.39■■□□□ 1.02
SNHG1-213ENST00000540725 JCADQ9P266 1359 aa21.38■■□□□ 1.01
SNHG1-213ENST00000540725 ATF3P18847 181 aa21.38■■□□□ 1.01
SNHG1-213ENST00000540725 HFM1A2PYH4 1435 aa21.37■■□□□ 1.01
SNHG1-213ENST00000540725 AHDC1Q5TGY3 1603 aaPredicted RBP21.37■■□□□ 1.01
SNHG1-213ENST00000540725 METP08581 1390 aa21.34■■□□□ 1.01
SNHG1-213ENST00000540725 DCCP43146 1447 aa21.34■■□□□ 1.01
SNHG1-213ENST00000540725 TRIM52Q96A61 297 aa21.34■■□□□ 1.01
SNHG1-213ENST00000540725 POTEAQ6S8J7 498 aa21.33■■□□□ 1
SNHG1-213ENST00000540725 SHPRHQ149N8 1683 aa21.32■■□□□ 1
SNHG1-213ENST00000540725 SETD1AO15047 1707 aaKnown RBP21.29■■□□□ 1
SNHG1-213ENST00000540725 NALCNQ8IZF0 1738 aa21.29■■□□□ 1
SNHG1-213ENST00000540725 BRINP3Q76B58 766 aa21.29■■□□□ 1
SNHG1-213ENST00000540725 SLC4A1APQ9BWU0 796 aaKnown RBP21.28■■□□□ 1
SNHG1-213ENST00000540725 PPLO60437 1756 aa21.27■■□□□ 1
SNHG1-213ENST00000540725 LRP6O75581 1613 aa21.27■■□□□ 1
SNHG1-213ENST00000540725 ASXL1Q8IXJ9 1541 aa21.27■■□□□ 1
SNHG1-213ENST00000540725 MST1RQ04912 1400 aa21.27■■□□□ 1
SNHG1-213ENST00000540725 ADGRL3Q9HAR2 1447 aa21.27■■□□□ 1
SNHG1-213ENST00000540725 SPATA31A6Q5VVP1 1343 aa21.26■□□□□ 0.99
SNHG1-213ENST00000540725 NHSL1Q5SYE7 1610 aa21.26■□□□□ 0.99
SNHG1-213ENST00000540725 VGFO15240 615 aaPredicted RBP21.24■□□□□ 0.99
SNHG1-213ENST00000540725 RPGRIP1LQ68CZ1 1315 aa21.22■□□□□ 0.99
SNHG1-213ENST00000540725 PTCH1Q13635 1447 aa21.21■□□□□ 0.99
SNHG1-213ENST00000540725 MEX3CQ5U5Q3 659 aaKnown RBP21.21■□□□□ 0.99
SNHG1-213ENST00000540725 SETD5Q9C0A6 1442 aa21.18■□□□□ 0.98
SNHG1-213ENST00000540725 FOXD1Q16676 465 aa21.18■□□□□ 0.98
SNHG1-213ENST00000540725 PRAG1Q86YV5 1406 aa21.17■□□□□ 0.98
SNHG1-213ENST00000540725 ROBO2Q9HCK4 1378 aa21.17■□□□□ 0.98
SNHG1-213ENST00000540725 CCDC144AA2RUR9 1427 aa21.15■□□□□ 0.98
SNHG1-213ENST00000540725 C1orf167Q5SNV9 1468 aa21.14■□□□□ 0.98
SNHG1-213ENST00000540725 IFT172Q9UG01 1749 aa21.14■□□□□ 0.98
SNHG1-213ENST00000540725 NUTM2BA6NNL0 878 aaPredicted RBP21.14■□□□□ 0.98
SNHG1-213ENST00000540725 NUTM2EB1AL46 878 aaPredicted RBP21.14■□□□□ 0.98
SNHG1-213ENST00000540725 ZNF772Q68DY9 489 aaPredicted RBP21.14■□□□□ 0.98
SNHG1-213ENST00000540725 NUTM2AQ8IVF1 878 aaPredicted RBP21.14■□□□□ 0.98
SNHG1-213ENST00000540725 DDX17Q92841 729 aaKnown RBP21.13■□□□□ 0.97
SNHG1-213ENST00000540725 LRRC59Q96AG4 307 aaKnown RBP21.13■□□□□ 0.97
SNHG1-213ENST00000540725 LAMC1P11047 1609 aa21.13■□□□□ 0.97
SNHG1-213ENST00000540725 SPATA31E1Q6ZUB1 1445 aa21.11■□□□□ 0.97
SNHG1-213ENST00000540725 MPHOSPH9Q99550 1183 aa21.1■□□□□ 0.97
SNHG1-213ENST00000540725 PNPLA6Q8IY17 1366 aa21.1■□□□□ 0.97
SNHG1-213ENST00000540725 ADGRF5Q8IZF2 1346 aa21.09■□□□□ 0.97
SNHG1-213ENST00000540725 RGL3Q3MIN7 710 aa21.09■□□□□ 0.97
SNHG1-213ENST00000540725 CDC42BPGQ6DT37 1551 aa21.07■□□□□ 0.96
SNHG1-213ENST00000540725 ORAI2Q96SN7 254 aa21.07■□□□□ 0.96
SNHG1-213ENST00000540725 ANKRD30BQ9BXX2 1392 aa21.07■□□□□ 0.96
SNHG1-213ENST00000540725 AFF2P51816 1311 aa21.06■□□□□ 0.96
SNHG1-213ENST00000540725 KNDC1Q76NI1 1749 aa21.05■□□□□ 0.96
SNHG1-213ENST00000540725 TECPR2O15040 1411 aa21.03■□□□□ 0.96
SNHG1-213ENST00000540725 SOS2Q07890 1332 aaPredicted RBP21.03■□□□□ 0.96
SNHG1-213ENST00000540725 PIK3C2GO75747 1445 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms