RNA–Protein interactions for RNA: ENST00000540183.1

SEMA4D-222, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 176 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-222ENST00000540183 TMEM131LA2VDJ0 1609 aa22.1■■□□□ 1.13
SEMA4D-222ENST00000540183 KCNA6P17658 529 aa22.1■■□□□ 1.13
SEMA4D-222ENST00000540183 CHD2O14647 1828 aaKnown RBP22.1■■□□□ 1.13
SEMA4D-222ENST00000540183 RPRD2Q5VT52 1461 aaKnown RBP22.09■■□□□ 1.13
SEMA4D-222ENST00000540183 ZFYVE9O95405 1425 aa22.07■■□□□ 1.12
SEMA4D-222ENST00000540183 PROSER2Q86WR7 435 aaPredicted RBP22.07■■□□□ 1.12
SEMA4D-222ENST00000540183 SLC52A1Q9NWF4 448 aa22.07■■□□□ 1.12
SEMA4D-222ENST00000540183 BCANQ96GW7 911 aa22.06■■□□□ 1.12
SEMA4D-222ENST00000540183 FAM135BQ49AJ0 1406 aa22.05■■□□□ 1.12
SEMA4D-222ENST00000540183 RIMS2Q9UQ26 1411 aa22.04■■□□□ 1.12
SEMA4D-222ENST00000540183 NKTRP30414 1462 aaKnown RBP22.03■■□□□ 1.12
SEMA4D-222ENST00000540183 IQGAP3Q86VI3 1631 aa22.03■■□□□ 1.12
SEMA4D-222ENST00000540183 RGS17Q9UGC6 210 aaPredicted RBP22.02■■□□□ 1.12
SEMA4D-222ENST00000540183 PLEKHG1Q9ULL1 1385 aa22■■□□□ 1.11
SEMA4D-222ENST00000540183 PHLPP1O60346 1717 aa22■■□□□ 1.11
SEMA4D-222ENST00000540183 CHGAP10645 457 aaKnown RBP21.99■■□□□ 1.11
SEMA4D-222ENST00000540183 NUTM2DQ5VT03 806 aaPredicted RBP21.99■■□□□ 1.11
SEMA4D-222ENST00000540183 PPARGC1BQ86YN6 1023 aaKnown RBP21.98■■□□□ 1.11
SEMA4D-222ENST00000540183 PPP1R15AO75807 674 aaPredicted RBP21.97■■□□□ 1.11
SEMA4D-222ENST00000540183 ITGAEP38570 1179 aa21.96■■□□□ 1.11
SEMA4D-222ENST00000540183 ROCK1Q13464 1354 aa21.96■■□□□ 1.11
SEMA4D-222ENST00000540183 MSH6P52701 1360 aa21.95■■□□□ 1.1
SEMA4D-222ENST00000540183 ADAMTS13Q76LX8 1427 aa21.94■■□□□ 1.1
SEMA4D-222ENST00000540183 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.92■■□□□ 1.1
SEMA4D-222ENST00000540183 SPHKAPQ2M3C7 1700 aa21.92■■□□□ 1.1
SEMA4D-222ENST00000540183 NUP155O75694 1391 aa21.91■■□□□ 1.1
SEMA4D-222ENST00000540183 SLAIN2Q9P270 581 aa21.9■■□□□ 1.1
SEMA4D-222ENST00000540183 TBX22Q9Y458 520 aa21.9■■□□□ 1.1
SEMA4D-222ENST00000540183 DIP2AQ14689 1571 aa21.9■■□□□ 1.1
SEMA4D-222ENST00000540183 COL16A1Q07092 1604 aaPredicted RBP21.89■■□□□ 1.09
SEMA4D-222ENST00000540183 HDGFP51858 240 aaKnown RBP21.89■■□□□ 1.09
SEMA4D-222ENST00000540183 POTEAQ6S8J7 498 aa21.89■■□□□ 1.09
SEMA4D-222ENST00000540183 NRXN3Q9Y4C0 1643 aa21.88■■□□□ 1.09
SEMA4D-222ENST00000540183 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.87■■□□□ 1.09
SEMA4D-222ENST00000540183 PTPRUQ92729 1446 aa21.86■■□□□ 1.09
SEMA4D-222ENST00000540183 SETD1AO15047 1707 aaKnown RBP21.86■■□□□ 1.09
SEMA4D-222ENST00000540183 TRPM2O94759 1503 aa21.85■■□□□ 1.09
SEMA4D-222ENST00000540183 C14orf37Q86TY3 774 aa21.84■■□□□ 1.09
SEMA4D-222ENST00000540183 XRN1Q8IZH2 1706 aaKnown RBP21.81■■□□□ 1.08
SEMA4D-222ENST00000540183 NCOA3Q9Y6Q9 1424 aa21.8■■□□□ 1.08
SEMA4D-222ENST00000540183 CLTCL1P53675 1640 aa21.8■■□□□ 1.08
SEMA4D-222ENST00000540183 PIK3R4Q99570 1358 aa21.8■■□□□ 1.08
SEMA4D-222ENST00000540183 JCADQ9P266 1359 aa21.8■■□□□ 1.08
SEMA4D-222ENST00000540183 AMOTL2Q9Y2J4 779 aa21.79■■□□□ 1.08
SEMA4D-222ENST00000540183 LRP6O75581 1613 aa21.79■■□□□ 1.08
SEMA4D-222ENST00000540183 AHDC1Q5TGY3 1603 aaPredicted RBP21.78■■□□□ 1.08
SEMA4D-222ENST00000540183 SETBP1Q9Y6X0 1596 aa21.78■■□□□ 1.08
SEMA4D-222ENST00000540183 SHPRHQ149N8 1683 aa21.77■■□□□ 1.08
SEMA4D-222ENST00000540183 KIF1BO60333 1816 aa21.77■■□□□ 1.08
SEMA4D-222ENST00000540183 C19orf44Q9H6X5 657 aa21.76■■□□□ 1.07
SEMA4D-222ENST00000540183 NEXMIFQ5QGS0 1516 aa21.75■■□□□ 1.07
SEMA4D-222ENST00000540183 ATF3P18847 181 aa21.74■■□□□ 1.07
SEMA4D-222ENST00000540183 ZNF326Q5BKZ1 582 aaKnown RBP21.74■■□□□ 1.07
SEMA4D-222ENST00000540183 CADPS2Q86UW7 1296 aa21.74■■□□□ 1.07
SEMA4D-222ENST00000540183 METP08581 1390 aa21.73■■□□□ 1.07
SEMA4D-222ENST00000540183 NALCNQ8IZF0 1738 aa21.72■■□□□ 1.07
SEMA4D-222ENST00000540183 BRINP3Q76B58 766 aa21.7■■□□□ 1.06
SEMA4D-222ENST00000540183 NAIPQ13075 1403 aa21.7■■□□□ 1.06
SEMA4D-222ENST00000540183 RRBP1Q9P2E9 1410 aaKnown RBP21.7■■□□□ 1.06
SEMA4D-222ENST00000540183 NHSL1Q5SYE7 1610 aa21.69■■□□□ 1.06
SEMA4D-222ENST00000540183 ASXL1Q8IXJ9 1541 aa21.69■■□□□ 1.06
SEMA4D-222ENST00000540183 MST1RQ04912 1400 aa21.67■■□□□ 1.06
SEMA4D-222ENST00000540183 SPATA31A6Q5VVP1 1343 aa21.66■■□□□ 1.06
SEMA4D-222ENST00000540183 MEX3CQ5U5Q3 659 aaKnown RBP21.66■■□□□ 1.06
SEMA4D-222ENST00000540183 DCCP43146 1447 aa21.65■■□□□ 1.06
SEMA4D-222ENST00000540183 NUTM2BA6NNL0 878 aaPredicted RBP21.63■■□□□ 1.05
SEMA4D-222ENST00000540183 NUTM2EB1AL46 878 aaPredicted RBP21.63■■□□□ 1.05
SEMA4D-222ENST00000540183 NUTM2AQ8IVF1 878 aaPredicted RBP21.63■■□□□ 1.05
SEMA4D-222ENST00000540183 PPLO60437 1756 aa21.62■■□□□ 1.05
SEMA4D-222ENST00000540183 DDX17Q92841 729 aaKnown RBP21.62■■□□□ 1.05
SEMA4D-222ENST00000540183 ADGRL3Q9HAR2 1447 aa21.62■■□□□ 1.05
SEMA4D-222ENST00000540183 TRIM52Q96A61 297 aa21.59■■□□□ 1.05
SEMA4D-222ENST00000540183 SETD5Q9C0A6 1442 aa21.57■■□□□ 1.04
SEMA4D-222ENST00000540183 ZNF772Q68DY9 489 aaPredicted RBP21.56■■□□□ 1.04
SEMA4D-222ENST00000540183 HFM1A2PYH4 1435 aa21.55■■□□□ 1.04
SEMA4D-222ENST00000540183 ROBO2Q9HCK4 1378 aa21.54■■□□□ 1.04
SEMA4D-222ENST00000540183 C1orf167Q5SNV9 1468 aa21.53■■□□□ 1.04
SEMA4D-222ENST00000540183 AFF2P51816 1311 aa21.53■■□□□ 1.04
SEMA4D-222ENST00000540183 LAMC1P11047 1609 aa21.52■■□□□ 1.04
SEMA4D-222ENST00000540183 PNPLA6Q8IY17 1366 aa21.52■■□□□ 1.04
SEMA4D-222ENST00000540183 PTCH1Q13635 1447 aa21.52■■□□□ 1.04
SEMA4D-222ENST00000540183 FOXD1Q16676 465 aa21.51■■□□□ 1.03
SEMA4D-222ENST00000540183 SLC4A1APQ9BWU0 796 aaKnown RBP21.51■■□□□ 1.03
SEMA4D-222ENST00000540183 LRRC59Q96AG4 307 aaKnown RBP21.5■■□□□ 1.03
SEMA4D-222ENST00000540183 VGFO15240 615 aaPredicted RBP21.49■■□□□ 1.03
SEMA4D-222ENST00000540183 IFT172Q9UG01 1749 aa21.49■■□□□ 1.03
SEMA4D-222ENST00000540183 RXRBP28702 533 aa21.48■■□□□ 1.03
SEMA4D-222ENST00000540183 UPF1Q92900 1129 aaKnown RBP eCLIP21.48■■□□□ 1.03
SEMA4D-222ENST00000540183 ORAI2Q96SN7 254 aa21.48■■□□□ 1.03
SEMA4D-222ENST00000540183 C8orf37Q96NL8 207 aa21.46■■□□□ 1.03
SEMA4D-222ENST00000540183 RPGRIP1LQ68CZ1 1315 aa21.45■■□□□ 1.02
SEMA4D-222ENST00000540183 PRAG1Q86YV5 1406 aa21.45■■□□□ 1.02
SEMA4D-222ENST00000540183 ADGRF5Q8IZF2 1346 aa21.43■■□□□ 1.02
SEMA4D-222ENST00000540183 CDK12Q9NYV4 1490 aaPredicted RBP21.43■■□□□ 1.02
SEMA4D-222ENST00000540183 RGS12O14924 1447 aa21.42■■□□□ 1.02
SEMA4D-222ENST00000540183 ADAMTS2O95450 1211 aa21.42■■□□□ 1.02
SEMA4D-222ENST00000540183 CDC42BPGQ6DT37 1551 aa21.4■■□□□ 1.02
SEMA4D-222ENST00000540183 SOS2Q07890 1332 aaPredicted RBP21.4■■□□□ 1.02
SEMA4D-222ENST00000540183 QTRT2Q9H974 415 aaKnown RBP21.4■■□□□ 1.02
SEMA4D-222ENST00000540183 COL22A1Q8NFW1 1626 aaPredicted RBP21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms