RNA–Protein interactions for RNA: ENST00000539613.5

RHBDD1-215, Transcript of rhomboid domain containing 1, human

TSL 4

Gene RHBDD1, Length 559 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RHBDD1-215	ENST00000539613	RBM33	Q96EV2	1170 aa	Known RBP	32.32	■■■□□ 2.76
RHBDD1-215	ENST00000539613	FAM50A	Q14320	339 aa	Known RBP	32.29	■■■□□ 2.76
RHBDD1-215	ENST00000539613	RPRD2	Q5VT52	1461 aa	Known RBP	32.27	■■■□□ 2.76
RHBDD1-215	ENST00000539613	RGS17	Q9UGC6	210 aa	Predicted RBP	32.25	■■■□□ 2.75
RHBDD1-215	ENST00000539613	ANKRD50	Q9ULJ7	1429 aa		32.25	■■■□□ 2.75
RHBDD1-215	ENST00000539613	MSH6	P52701	1360 aa		32.24	■■■□□ 2.75
RHBDD1-215	ENST00000539613	PHLPP1	O60346	1717 aa		32.24	■■■□□ 2.75
RHBDD1-215	ENST00000539613	SLC52A1	Q9NWF4	448 aa		32.24	■■■□□ 2.75
RHBDD1-215	ENST00000539613	CHD2	O14647	1828 aa	Known RBP	32.22	■■■□□ 2.75
RHBDD1-215	ENST00000539613	PPP1R15A	O75807	674 aa	Predicted RBP	32.22	■■■□□ 2.75
RHBDD1-215	ENST00000539613	TMEM131L	A2VDJ0	1609 aa		32.19	■■■□□ 2.74
RHBDD1-215	ENST00000539613	ZFYVE9	O95405	1425 aa		32.18	■■■□□ 2.74
RHBDD1-215	ENST00000539613	UNC13B	O14795	1591 aa		32.18	■■■□□ 2.74
RHBDD1-215	ENST00000539613	RIMS2	Q9UQ26	1411 aa		32.17	■■■□□ 2.74
RHBDD1-215	ENST00000539613	PLEKHG1	Q9ULL1	1385 aa		32.17	■■■□□ 2.74
RHBDD1-215	ENST00000539613		E9PCH4	1651 aa		32.13	■■■□□ 2.73
RHBDD1-215	ENST00000539613	CHGA	P10645	457 aa	Known RBP	32.12	■■■□□ 2.73
RHBDD1-215	ENST00000539613	SETD1A	O15047	1707 aa	Known RBP	32.11	■■■□□ 2.73
RHBDD1-215	ENST00000539613	POTEA	Q6S8J7	498 aa		32.1	■■■□□ 2.73
RHBDD1-215	ENST00000539613	HDGF	P51858	240 aa	Known RBP	32.09	■■■□□ 2.73
RHBDD1-215	ENST00000539613	C14orf37	Q86TY3	774 aa		32.08	■■■□□ 2.73
RHBDD1-215	ENST00000539613	SLAIN2	Q9P270	581 aa		32.08	■■■□□ 2.73
RHBDD1-215	ENST00000539613	COL16A1	Q07092	1604 aa	Predicted RBP	32.06	■■■□□ 2.72
RHBDD1-215	ENST00000539613	DIP2A	Q14689	1571 aa		32.06	■■■□□ 2.72
RHBDD1-215	ENST00000539613	IQGAP3	Q86VI3	1631 aa		32.05	■■■□□ 2.72
RHBDD1-215	ENST00000539613	JCAD	Q9P266	1359 aa		32.05	■■■□□ 2.72
RHBDD1-215	ENST00000539613	NUTM2D	Q5VT03	806 aa	Predicted RBP	32.03	■■■□□ 2.72
RHBDD1-215	ENST00000539613	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.02	■■■□□ 2.72
RHBDD1-215	ENST00000539613	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.01	■■■□□ 2.71
RHBDD1-215	ENST00000539613	TRPM2	O94759	1503 aa		31.97	■■■□□ 2.71
RHBDD1-215	ENST00000539613	TBX22	Q9Y458	520 aa		31.97	■■■□□ 2.71
RHBDD1-215	ENST00000539613	ADAMTS13	Q76LX8	1427 aa		31.97	■■■□□ 2.71
RHBDD1-215	ENST00000539613	NCOA3	Q9Y6Q9	1424 aa		31.94	■■■□□ 2.7
RHBDD1-215	ENST00000539613	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.92	■■■□□ 2.7
RHBDD1-215	ENST00000539613	SHPRH	Q149N8	1683 aa		31.92	■■■□□ 2.7
RHBDD1-215	ENST00000539613	ROCK1	Q13464	1354 aa		31.92	■■■□□ 2.7
RHBDD1-215	ENST00000539613	LRP6	O75581	1613 aa		31.91	■■■□□ 2.7
RHBDD1-215	ENST00000539613	ATF3	P18847	181 aa		31.91	■■■□□ 2.7
RHBDD1-215	ENST00000539613	MEX3C	Q5U5Q3	659 aa	Known RBP	31.91	■■■□□ 2.7
RHBDD1-215	ENST00000539613	SPHKAP	Q2M3C7	1700 aa		31.9	■■■□□ 2.7
RHBDD1-215	ENST00000539613	PIK3R4	Q99570	1358 aa		31.9	■■■□□ 2.7
RHBDD1-215	ENST00000539613	CADPS2	Q86UW7	1296 aa		31.89	■■■□□ 2.7
RHBDD1-215	ENST00000539613	NUP155	O75694	1391 aa		31.89	■■■□□ 2.7
RHBDD1-215	ENST00000539613	ITGAE	P38570	1179 aa		31.88	■■■□□ 2.69
RHBDD1-215	ENST00000539613	SPATA31A6	Q5VVP1	1343 aa		31.85	■■■□□ 2.69
RHBDD1-215	ENST00000539613	C19orf44	Q9H6X5	657 aa		31.85	■■■□□ 2.69
RHBDD1-215	ENST00000539613	XRN1	Q8IZH2	1706 aa	Known RBP	31.83	■■■□□ 2.69
RHBDD1-215	ENST00000539613	NRXN3	Q9Y4C0	1643 aa		31.83	■■■□□ 2.69
RHBDD1-215	ENST00000539613	PTPRU	Q92729	1446 aa		31.82	■■■□□ 2.68
RHBDD1-215	ENST00000539613	AMOTL2	Q9Y2J4	779 aa		31.81	■■■□□ 2.68
RHBDD1-215	ENST00000539613	SETBP1	Q9Y6X0	1596 aa		31.78	■■■□□ 2.68
RHBDD1-215	ENST00000539613	ASXL1	Q8IXJ9	1541 aa		31.77	■■■□□ 2.68
RHBDD1-215	ENST00000539613	DCC	P43146	1447 aa		31.75	■■■□□ 2.67
RHBDD1-215	ENST00000539613	ZNF326	Q5BKZ1	582 aa	Known RBP	31.75	■■■□□ 2.67
RHBDD1-215	ENST00000539613	ZNF772	Q68DY9	489 aa	Predicted RBP	31.75	■■■□□ 2.67
RHBDD1-215	ENST00000539613	TRIM52	Q96A61	297 aa		31.75	■■■□□ 2.67
RHBDD1-215	ENST00000539613	BRINP3	Q76B58	766 aa		31.74	■■■□□ 2.67
RHBDD1-215	ENST00000539613	NUTM2B	A6NNL0	878 aa	Predicted RBP	31.73	■■■□□ 2.67
RHBDD1-215	ENST00000539613	NUTM2E	B1AL46	878 aa	Predicted RBP	31.73	■■■□□ 2.67
RHBDD1-215	ENST00000539613	NUTM2A	Q8IVF1	878 aa	Predicted RBP	31.73	■■■□□ 2.67
RHBDD1-215	ENST00000539613	NHSL1	Q5SYE7	1610 aa		31.73	■■■□□ 2.67
RHBDD1-215	ENST00000539613	NALCN	Q8IZF0	1738 aa		31.7	■■■□□ 2.67
RHBDD1-215	ENST00000539613	CLTCL1	P53675	1640 aa		31.7	■■■□□ 2.66
RHBDD1-215	ENST00000539613	KIF1B	O60333	1816 aa		31.68	■■■□□ 2.66
RHBDD1-215	ENST00000539613	PPARGC1B	Q86YN6	1023 aa	Known RBP	31.68	■■■□□ 2.66
RHBDD1-215	ENST00000539613	MST1R	Q04912	1400 aa		31.67	■■■□□ 2.66
RHBDD1-215	ENST00000539613	NEXMIF	Q5QGS0	1516 aa		31.65	■■■□□ 2.66
RHBDD1-215	ENST00000539613	MET	P08581	1390 aa		31.64	■■■□□ 2.66
RHBDD1-215	ENST00000539613	ADGRL3	Q9HAR2	1447 aa		31.63	■■■□□ 2.65
RHBDD1-215	ENST00000539613	SETD5	Q9C0A6	1442 aa		31.61	■■■□□ 2.65
RHBDD1-215	ENST00000539613	RXRB	P28702	533 aa		31.6	■■■□□ 2.65
RHBDD1-215	ENST00000539613	AFF2	P51816	1311 aa		31.59	■■■□□ 2.65
RHBDD1-215	ENST00000539613	UPF1	Q92900	1129 aa	Known RBP eCLIP	31.58	■■■□□ 2.65
RHBDD1-215	ENST00000539613	CDK12	Q9NYV4	1490 aa	Predicted RBP	31.54	■■■□□ 2.64
RHBDD1-215	ENST00000539613	DDX17	Q92841	729 aa	Known RBP	31.54	■■■□□ 2.64
RHBDD1-215	ENST00000539613	LRRC59	Q96AG4	307 aa	Known RBP	31.53	■■■□□ 2.64
RHBDD1-215	ENST00000539613	C8orf37	Q96NL8	207 aa		31.53	■■■□□ 2.64
RHBDD1-215	ENST00000539613	PNPLA6	Q8IY17	1366 aa		31.51	■■■□□ 2.63
RHBDD1-215	ENST00000539613	PTCH1	Q13635	1447 aa		31.46	■■■□□ 2.63
RHBDD1-215	ENST00000539613	C1orf167	Q5SNV9	1468 aa		31.46	■■■□□ 2.63
RHBDD1-215	ENST00000539613	RGS12	O14924	1447 aa		31.45	■■■□□ 2.63
RHBDD1-215	ENST00000539613	NAIP	Q13075	1403 aa		31.43	■■■□□ 2.62
RHBDD1-215	ENST00000539613	PPL	O60437	1756 aa		31.43	■■■□□ 2.62
RHBDD1-215	ENST00000539613	LAMC1	P11047	1609 aa		31.42	■■■□□ 2.62
RHBDD1-215	ENST00000539613	ADAMTS2	O95450	1211 aa		31.41	■■■□□ 2.62
RHBDD1-215	ENST00000539613	ROBO2	Q9HCK4	1378 aa		31.4	■■■□□ 2.62
RHBDD1-215	ENST00000539613	RRBP1	Q9P2E9	1410 aa	Known RBP	31.4	■■■□□ 2.62
RHBDD1-215	ENST00000539613	QTRT2	Q9H974	415 aa	Known RBP	31.39	■■■□□ 2.62
RHBDD1-215	ENST00000539613	VGF	O15240	615 aa	Predicted RBP	31.37	■■■□□ 2.61
RHBDD1-215	ENST00000539613	RBM6	P78332	1123 aa	Known RBP	31.37	■■■□□ 2.61
RHBDD1-215	ENST00000539613	NGLY1	Q96IV0	654 aa		31.37	■■■□□ 2.61
RHBDD1-215	ENST00000539613	ORAI2	Q96SN7	254 aa		31.34	■■■□□ 2.61
RHBDD1-215	ENST00000539613	HFM1	A2PYH4	1435 aa		31.31	■■■□□ 2.6
RHBDD1-215	ENST00000539613	COL22A1	Q8NFW1	1626 aa	Predicted RBP	31.3	■■■□□ 2.6
RHBDD1-215	ENST00000539613	PRAG1	Q86YV5	1406 aa		31.3	■■■□□ 2.6
RHBDD1-215	ENST00000539613	SOS2	Q07890	1332 aa	Predicted RBP	31.29	■■■□□ 2.6
RHBDD1-215	ENST00000539613	CDC42BPG	Q6DT37	1551 aa		31.29	■■■□□ 2.6
RHBDD1-215	ENST00000539613	SLC4A1AP	Q9BWU0	796 aa	Known RBP	31.28	■■■□□ 2.6
RHBDD1-215	ENST00000539613	RPGRIP1L	Q68CZ1	1315 aa		31.27	■■■□□ 2.6
RHBDD1-215	ENST00000539613	USP21	Q9UK80	565 aa		31.26	■■■□□ 2.59

Retrieved 100 of 20,778 RNA–protein pairs in 195.5 ms