RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 GCC2Q8IWJ2 1684 aa21.87■■□□□ 1.09
SMARCA4-206ENST00000538456 POTEAQ6S8J7 498 aa21.86■■□□□ 1.09
SMARCA4-206ENST00000538456 PHLPP1O60346 1717 aa21.86■■□□□ 1.09
SMARCA4-206ENST00000538456 MSH6P52701 1360 aa21.86■■□□□ 1.09
SMARCA4-206ENST00000538456 ADGRL2O95490 1459 aa21.85■■□□□ 1.09
SMARCA4-206ENST00000538456 SLC52A1Q9NWF4 448 aa21.84■■□□□ 1.09
SMARCA4-206ENST00000538456 CHD2O14647 1828 aaKnown RBP21.83■■□□□ 1.09
SMARCA4-206ENST00000538456 RPRD2Q5VT52 1461 aaKnown RBP21.83■■□□□ 1.08
SMARCA4-206ENST00000538456 ZFYVE9O95405 1425 aa21.82■■□□□ 1.08
SMARCA4-206ENST00000538456 PPP1R15AO75807 674 aaPredicted RBP21.82■■□□□ 1.08
SMARCA4-206ENST00000538456 FAM50AQ14320 339 aaKnown RBP21.82■■□□□ 1.08
SMARCA4-206ENST00000538456 ANKRD50Q9ULJ7 1429 aa21.81■■□□□ 1.08
SMARCA4-206ENST00000538456 SETD1AO15047 1707 aaKnown RBP21.8■■□□□ 1.08
SMARCA4-206ENST00000538456 PLEKHG1Q9ULL1 1385 aa21.8■■□□□ 1.08
SMARCA4-206ENST00000538456 SLAIN2Q9P270 581 aa21.8■■□□□ 1.08
SMARCA4-206ENST00000538456 TMEM131LA2VDJ0 1609 aa21.8■■□□□ 1.08
SMARCA4-206ENST00000538456 RIMS2Q9UQ26 1411 aa21.8■■□□□ 1.08
SMARCA4-206ENST00000538456 COL16A1Q07092 1604 aaPredicted RBP21.75■■□□□ 1.07
SMARCA4-206ENST00000538456 JCADQ9P266 1359 aa21.74■■□□□ 1.07
SMARCA4-206ENST00000538456 UNC13BO14795 1591 aa21.74■■□□□ 1.07
SMARCA4-206ENST00000538456 CHGAP10645 457 aaKnown RBP21.74■■□□□ 1.07
SMARCA4-206ENST00000538456 E9PCH4 1651 aa21.73■■□□□ 1.07
SMARCA4-206ENST00000538456 NUTM2DQ5VT03 806 aaPredicted RBP21.73■■□□□ 1.07
SMARCA4-206ENST00000538456 C14orf37Q86TY3 774 aa21.73■■□□□ 1.07
SMARCA4-206ENST00000538456 HDGFP51858 240 aaKnown RBP21.72■■□□□ 1.07
SMARCA4-206ENST00000538456 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.7■■□□□ 1.06
SMARCA4-206ENST00000538456 TBX22Q9Y458 520 aa21.69■■□□□ 1.06
SMARCA4-206ENST00000538456 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.68■■□□□ 1.06
SMARCA4-206ENST00000538456 ADAMTS13Q76LX8 1427 aa21.68■■□□□ 1.06
SMARCA4-206ENST00000538456 DIP2AQ14689 1571 aa21.68■■□□□ 1.06
SMARCA4-206ENST00000538456 LRP6O75581 1613 aa21.68■■□□□ 1.06
SMARCA4-206ENST00000538456 NCOA3Q9Y6Q9 1424 aa21.66■■□□□ 1.06
SMARCA4-206ENST00000538456 IQGAP3Q86VI3 1631 aa21.66■■□□□ 1.06
SMARCA4-206ENST00000538456 MEX3CQ5U5Q3 659 aaKnown RBP21.65■■□□□ 1.06
SMARCA4-206ENST00000538456 AHDC1Q5TGY3 1603 aaPredicted RBP21.64■■□□□ 1.05
SMARCA4-206ENST00000538456 SHPRHQ149N8 1683 aa21.63■■□□□ 1.05
SMARCA4-206ENST00000538456 ATF3P18847 181 aa21.63■■□□□ 1.05
SMARCA4-206ENST00000538456 CADPS2Q86UW7 1296 aa21.63■■□□□ 1.05
SMARCA4-206ENST00000538456 TRPM2O94759 1503 aa21.63■■□□□ 1.05
SMARCA4-206ENST00000538456 SPATA31A6Q5VVP1 1343 aa21.62■■□□□ 1.05
SMARCA4-206ENST00000538456 C19orf44Q9H6X5 657 aa21.62■■□□□ 1.05
SMARCA4-206ENST00000538456 PIK3R4Q99570 1358 aa21.61■■□□□ 1.05
SMARCA4-206ENST00000538456 PTPRUQ92729 1446 aa21.59■■□□□ 1.05
SMARCA4-206ENST00000538456 TRIM52Q96A61 297 aa21.58■■□□□ 1.05
SMARCA4-206ENST00000538456 AMOTL2Q9Y2J4 779 aa21.58■■□□□ 1.05
SMARCA4-206ENST00000538456 NUP155O75694 1391 aa21.58■■□□□ 1.04
SMARCA4-206ENST00000538456 ROCK1Q13464 1354 aa21.58■■□□□ 1.04
SMARCA4-206ENST00000538456 ZNF772Q68DY9 489 aaPredicted RBP21.57■■□□□ 1.04
SMARCA4-206ENST00000538456 NRXN3Q9Y4C0 1643 aa21.56■■□□□ 1.04
SMARCA4-206ENST00000538456 BRINP3Q76B58 766 aa21.56■■□□□ 1.04
SMARCA4-206ENST00000538456 XRN1Q8IZH2 1706 aaKnown RBP21.55■■□□□ 1.04
SMARCA4-206ENST00000538456 ITGAEP38570 1179 aa21.55■■□□□ 1.04
SMARCA4-206ENST00000538456 NUTM2BA6NNL0 878 aaPredicted RBP21.54■■□□□ 1.04
SMARCA4-206ENST00000538456 NUTM2EB1AL46 878 aaPredicted RBP21.54■■□□□ 1.04
SMARCA4-206ENST00000538456 NUTM2AQ8IVF1 878 aaPredicted RBP21.54■■□□□ 1.04
SMARCA4-206ENST00000538456 SPHKAPQ2M3C7 1700 aa21.54■■□□□ 1.04
SMARCA4-206ENST00000538456 ASXL1Q8IXJ9 1541 aa21.54■■□□□ 1.04
SMARCA4-206ENST00000538456 DCCP43146 1447 aa21.52■■□□□ 1.04
SMARCA4-206ENST00000538456 SETBP1Q9Y6X0 1596 aa21.52■■□□□ 1.04
SMARCA4-206ENST00000538456 UPF1Q92900 1129 aaKnown RBP eCLIP21.5■■□□□ 1.03
SMARCA4-206ENST00000538456 NHSL1Q5SYE7 1610 aa21.5■■□□□ 1.03
SMARCA4-206ENST00000538456 ZNF326Q5BKZ1 582 aaKnown RBP21.49■■□□□ 1.03
SMARCA4-206ENST00000538456 MST1RQ04912 1400 aa21.48■■□□□ 1.03
SMARCA4-206ENST00000538456 RXRBP28702 533 aa21.48■■□□□ 1.03
SMARCA4-206ENST00000538456 METP08581 1390 aa21.47■■□□□ 1.03
SMARCA4-206ENST00000538456 AFF2P51816 1311 aa21.46■■□□□ 1.03
SMARCA4-206ENST00000538456 NALCNQ8IZF0 1738 aa21.46■■□□□ 1.03
SMARCA4-206ENST00000538456 SETD5Q9C0A6 1442 aa21.46■■□□□ 1.03
SMARCA4-206ENST00000538456 DDX17Q92841 729 aaKnown RBP21.44■■□□□ 1.02
SMARCA4-206ENST00000538456 CLTCL1P53675 1640 aa21.44■■□□□ 1.02
SMARCA4-206ENST00000538456 ADGRL3Q9HAR2 1447 aa21.43■■□□□ 1.02
SMARCA4-206ENST00000538456 NEXMIFQ5QGS0 1516 aa21.42■■□□□ 1.02
SMARCA4-206ENST00000538456 PPARGC1BQ86YN6 1023 aaKnown RBP21.42■■□□□ 1.02
SMARCA4-206ENST00000538456 CDK12Q9NYV4 1490 aaPredicted RBP21.42■■□□□ 1.02
SMARCA4-206ENST00000538456 LRRC59Q96AG4 307 aaKnown RBP21.4■■□□□ 1.02
SMARCA4-206ENST00000538456 C8orf37Q96NL8 207 aa21.4■■□□□ 1.02
SMARCA4-206ENST00000538456 KIF1BO60333 1816 aa21.39■■□□□ 1.02
SMARCA4-206ENST00000538456 PNPLA6Q8IY17 1366 aa21.38■■□□□ 1.01
SMARCA4-206ENST00000538456 RGS12O14924 1447 aa21.37■■□□□ 1.01
SMARCA4-206ENST00000538456 QTRT2Q9H974 415 aaKnown RBP21.34■■□□□ 1.01
SMARCA4-206ENST00000538456 C1orf167Q5SNV9 1468 aa21.33■■□□□ 1.01
SMARCA4-206ENST00000538456 ADAMTS2O95450 1211 aa21.33■■□□□ 1.01
SMARCA4-206ENST00000538456 RBM6P78332 1123 aaKnown RBP21.31■■□□□ 1
SMARCA4-206ENST00000538456 PTCH1Q13635 1447 aa21.3■■□□□ 1
SMARCA4-206ENST00000538456 LAMC1P11047 1609 aa21.3■■□□□ 1
SMARCA4-206ENST00000538456 NGLY1Q96IV0 654 aa21.3■■□□□ 1
SMARCA4-206ENST00000538456 ROBO2Q9HCK4 1378 aa21.29■■□□□ 1
SMARCA4-206ENST00000538456 ORAI2Q96SN7 254 aa21.28■■□□□ 1
SMARCA4-206ENST00000538456 NAIPQ13075 1403 aa21.25■□□□□ 0.99
SMARCA4-206ENST00000538456 SRCAPQ6ZRS2 3230 aa21.25■□□□□ 0.99
SMARCA4-206ENST00000538456 PPLO60437 1756 aa21.24■□□□□ 0.99
SMARCA4-206ENST00000538456 VGFO15240 615 aaPredicted RBP21.24■□□□□ 0.99
SMARCA4-206ENST00000538456 SOS2Q07890 1332 aaPredicted RBP21.24■□□□□ 0.99
SMARCA4-206ENST00000538456 USP21Q9UK80 565 aa21.23■□□□□ 0.99
SMARCA4-206ENST00000538456 COL22A1Q8NFW1 1626 aaPredicted RBP21.21■□□□□ 0.99
SMARCA4-206ENST00000538456 PRAG1Q86YV5 1406 aa21.21■□□□□ 0.99
SMARCA4-206ENST00000538456 ATAD2Q6PL18 1390 aa21.2■□□□□ 0.98
SMARCA4-206ENST00000538456 HFM1A2PYH4 1435 aa21.2■□□□□ 0.98
SMARCA4-206ENST00000538456 RRBP1Q9P2E9 1410 aaKnown RBP21.2■□□□□ 0.98
SMARCA4-206ENST00000538456 TRPC5Q9UL62 973 aaPredicted RBP21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms