RNA–Protein interactions for RNA: ENST00000538176.5

CCDC78-215, Transcript of coiled-coil domain containing 78, human

TSL 2

Gene CCDC78, Length 1,166 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC78-215	ENST00000538176	LRRC7	Q96NW7	1537 aa		32.21	■■■□□ 2.75
CCDC78-215	ENST00000538176	KCNA6	P17658	529 aa		32.21	■■■□□ 2.75
CCDC78-215	ENST00000538176	ACIN1	Q9UKV3	1341 aa	Known RBP	32.21	■■■□□ 2.75
CCDC78-215	ENST00000538176	PLEKHG1	Q9ULL1	1385 aa		32.2	■■■□□ 2.75
CCDC78-215	ENST00000538176	SLC26A8	Q96RN1	970 aa		32.19	■■■□□ 2.74
CCDC78-215	ENST00000538176	STRCP1	A6NGW2	1772 aa		32.19	■■■□□ 2.74
CCDC78-215	ENST00000538176	MYO5B	Q9ULV0	1848 aa		32.17	■■■□□ 2.74
CCDC78-215	ENST00000538176	SPHKAP	Q2M3C7	1700 aa		32.15	■■■□□ 2.74
CCDC78-215	ENST00000538176	TBX22	Q9Y458	520 aa		32.14	■■■□□ 2.74
CCDC78-215	ENST00000538176	SLC4A1AP	Q9BWU0	796 aa	Known RBP	32.13	■■■□□ 2.73
CCDC78-215	ENST00000538176	SCAF1	Q9H7N4	1312 aa	Known RBP	32.1	■■■□□ 2.73
CCDC78-215	ENST00000538176	PIP4K2B	P78356	416 aa		32.1	■■■□□ 2.73
CCDC78-215	ENST00000538176	PROSER2	Q86WR7	435 aa	Predicted RBP	32.07	■■■□□ 2.72
CCDC78-215	ENST00000538176	TRPM2	O94759	1503 aa		32.06	■■■□□ 2.72
CCDC78-215	ENST00000538176	ZNF326	Q5BKZ1	582 aa	Known RBP	32.06	■■■□□ 2.72
CCDC78-215	ENST00000538176	NKTR	P30414	1462 aa	Known RBP	32.04	■■■□□ 2.72
CCDC78-215	ENST00000538176	PIK3R4	Q99570	1358 aa		32.04	■■■□□ 2.72
CCDC78-215	ENST00000538176	NUTM2D	Q5VT03	806 aa	Predicted RBP	32.02	■■■□□ 2.72
CCDC78-215	ENST00000538176	TMEM94	Q12767	1356 aa		32.02	■■■□□ 2.72
CCDC78-215	ENST00000538176	DIP2A	Q14689	1571 aa		32.01	■■■□□ 2.71
CCDC78-215	ENST00000538176	NWD1	Q149M9	1564 aa		32.01	■■■□□ 2.71
CCDC78-215	ENST00000538176	ADAMTS13	Q76LX8	1427 aa		31.98	■■■□□ 2.71
CCDC78-215	ENST00000538176	CHD2	O14647	1828 aa	Known RBP	31.98	■■■□□ 2.71
CCDC78-215	ENST00000538176	KIF1B	O60333	1816 aa		31.96	■■■□□ 2.71
CCDC78-215	ENST00000538176	HSPA1L	P34931	641 aa		31.96	■■■□□ 2.71
CCDC78-215	ENST00000538176	SENP3	Q9H4L4	574 aa	Predicted RBP	31.96	■■■□□ 2.71
CCDC78-215	ENST00000538176	CLTCL1	P53675	1640 aa		31.96	■■■□□ 2.71
CCDC78-215	ENST00000538176	ALK	Q9UM73	1620 aa		31.96	■■■□□ 2.71
CCDC78-215	ENST00000538176	NCOA3	Q9Y6Q9	1424 aa		31.95	■■■□□ 2.71
CCDC78-215	ENST00000538176	XIRP1	Q702N8	1843 aa	Known RBP	31.95	■■■□□ 2.7
CCDC78-215	ENST00000538176	MPHOSPH9	Q99550	1183 aa		31.94	■■■□□ 2.7
CCDC78-215	ENST00000538176	RPGRIP1L	Q68CZ1	1315 aa		31.94	■■■□□ 2.7
CCDC78-215	ENST00000538176	SETD5	Q9C0A6	1442 aa		31.93	■■■□□ 2.7
CCDC78-215	ENST00000538176	VGF	O15240	615 aa	Predicted RBP	31.92	■■■□□ 2.7
CCDC78-215	ENST00000538176	MSH6	P52701	1360 aa		31.91	■■■□□ 2.7
CCDC78-215	ENST00000538176	DISP3	Q9P2K9	1392 aa		31.88	■■■□□ 2.69
CCDC78-215	ENST00000538176	SETBP1	Q9Y6X0	1596 aa		31.88	■■■□□ 2.69
CCDC78-215	ENST00000538176	FAM135B	Q49AJ0	1406 aa		31.86	■■■□□ 2.69
CCDC78-215	ENST00000538176	AMOTL2	Q9Y2J4	779 aa		31.86	■■■□□ 2.69
CCDC78-215	ENST00000538176	NEXMIF	Q5QGS0	1516 aa		31.85	■■■□□ 2.69
CCDC78-215	ENST00000538176	RBM33	Q96EV2	1170 aa	Known RBP	31.84	■■■□□ 2.69
CCDC78-215	ENST00000538176	CCDC144A	A2RUR9	1427 aa		31.83	■■■□□ 2.69
CCDC78-215	ENST00000538176	FOXD1	Q16676	465 aa		31.82	■■■□□ 2.68
CCDC78-215	ENST00000538176	C14orf37	Q86TY3	774 aa		31.8	■■■□□ 2.68
CCDC78-215	ENST00000538176	C19orf44	Q9H6X5	657 aa		31.8	■■■□□ 2.68
CCDC78-215	ENST00000538176	HRC	P23327	699 aa		31.79	■■■□□ 2.68
CCDC78-215	ENST00000538176	NRXN3	Q9Y4C0	1643 aa		31.78	■■■□□ 2.68
CCDC78-215	ENST00000538176	SLAIN2	Q9P270	581 aa		31.78	■■■□□ 2.68
CCDC78-215	ENST00000538176	CADPS2	Q86UW7	1296 aa		31.77	■■■□□ 2.68
CCDC78-215	ENST00000538176	RAB3GAP2	Q9H2M9	1393 aa		31.77	■■■□□ 2.68
CCDC78-215	ENST00000538176	PTPRU	Q92729	1446 aa		31.75	■■■□□ 2.67
CCDC78-215	ENST00000538176	MET	P08581	1390 aa		31.73	■■■□□ 2.67
CCDC78-215	ENST00000538176	ATF3	P18847	181 aa		31.73	■■■□□ 2.67
CCDC78-215	ENST00000538176	ANKRD30B	Q9BXX2	1392 aa		31.69	■■■□□ 2.66
CCDC78-215	ENST00000538176	SPATA31E1	Q6ZUB1	1445 aa		31.67	■■■□□ 2.66
CCDC78-215	ENST00000538176	XRN1	Q8IZH2	1706 aa	Known RBP	31.67	■■■□□ 2.66
CCDC78-215	ENST00000538176	PPL	O60437	1756 aa		31.67	■■■□□ 2.66
CCDC78-215	ENST00000538176	RGL3	Q3MIN7	710 aa		31.67	■■■□□ 2.66
CCDC78-215	ENST00000538176	ROBO1	Q9Y6N7	1651 aa		31.65	■■■□□ 2.66
CCDC78-215	ENST00000538176	DCC	P43146	1447 aa		31.65	■■■□□ 2.66
CCDC78-215	ENST00000538176	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	31.63	■■■□□ 2.65
CCDC78-215	ENST00000538176	MED1	Q15648	1581 aa	Predicted RBP	31.57	■■■□□ 2.64
CCDC78-215	ENST00000538176	PTCH1	Q13635	1447 aa		31.57	■■■□□ 2.64
CCDC78-215	ENST00000538176	PRAG1	Q86YV5	1406 aa		31.57	■■■□□ 2.64
CCDC78-215	ENST00000538176	ADGRF5	Q8IZF2	1346 aa		31.56	■■■□□ 2.64
CCDC78-215	ENST00000538176	SETD1A	O15047	1707 aa	Known RBP	31.54	■■■□□ 2.64
CCDC78-215	ENST00000538176	ADGRL3	Q9HAR2	1447 aa		31.53	■■■□□ 2.64
CCDC78-215	ENST00000538176	ILDR2	Q71H61	639 aa		31.52	■■■□□ 2.64
CCDC78-215	ENST00000538176	PHF23	Q9BUL5	403 aa	Predicted RBP	31.52	■■■□□ 2.64
CCDC78-215	ENST00000538176	IFT172	Q9UG01	1749 aa		31.5	■■■□□ 2.63
CCDC78-215	ENST00000538176	STAC3	Q96MF2	364 aa		31.48	■■■□□ 2.63
CCDC78-215	ENST00000538176	ROBO2	Q9HCK4	1378 aa		31.47	■■■□□ 2.63
CCDC78-215	ENST00000538176	PIK3C2G	O75747	1445 aa		31.47	■■■□□ 2.63
CCDC78-215	ENST00000538176	PHLPP1	O60346	1717 aa		31.46	■■■□□ 2.63
CCDC78-215	ENST00000538176	JCAD	Q9P266	1359 aa		31.46	■■■□□ 2.63
CCDC78-215	ENST00000538176	BRINP3	Q76B58	766 aa		31.46	■■■□□ 2.63
CCDC78-215	ENST00000538176	MST1R	Q04912	1400 aa		31.44	■■■□□ 2.62
CCDC78-215	ENST00000538176	C14orf93	Q9H972	538 aa	Known RBP	31.44	■■■□□ 2.62
CCDC78-215	ENST00000538176	ABCC11	Q96J66	1382 aa		31.43	■■■□□ 2.62
CCDC78-215	ENST00000538176	MYOM2	P54296	1465 aa		31.42	■■■□□ 2.62
CCDC78-215	ENST00000538176	LRPPRC	P42704	1394 aa	Known RBP	31.42	■■■□□ 2.62
CCDC78-215	ENST00000538176	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.42	■■■□□ 2.62
CCDC78-215	ENST00000538176	SIRT1	Q96EB6	747 aa		31.4	■■■□□ 2.62
CCDC78-215	ENST00000538176	TECPR2	O15040	1411 aa		31.4	■■■□□ 2.62
CCDC78-215	ENST00000538176	NRXN1	Q9ULB1	1477 aa		31.4	■■■□□ 2.62
CCDC78-215	ENST00000538176	SOCS7	O14512	581 aa		31.39	■■■□□ 2.62
CCDC78-215	ENST00000538176	NALCN	Q8IZF0	1738 aa		31.38	■■■□□ 2.61
CCDC78-215	ENST00000538176	STK26	Q9P289	416 aa		31.37	■■■□□ 2.61
CCDC78-215	ENST00000538176	COL16A1	Q07092	1604 aa	Predicted RBP	31.36	■■■□□ 2.61
CCDC78-215	ENST00000538176	SPATA31A6	Q5VVP1	1343 aa		31.36	■■■□□ 2.61
CCDC78-215	ENST00000538176	TMEM132E	Q6IEE7	984 aa		31.36	■■■□□ 2.61
CCDC78-215	ENST00000538176	ASXL1	Q8IXJ9	1541 aa		31.35	■■■□□ 2.61
CCDC78-215	ENST00000538176	DHX57	Q6P158	1386 aa	Known RBP	31.35	■■■□□ 2.61
CCDC78-215	ENST00000538176	YTHDC2	Q9H6S0	1430 aa	Known RBP	31.33	■■■□□ 2.61
CCDC78-215	ENST00000538176	LRRC59	Q96AG4	307 aa	Known RBP	31.33	■■■□□ 2.61
CCDC78-215	ENST00000538176	LAMC1	P11047	1609 aa		31.33	■■■□□ 2.61
CCDC78-215	ENST00000538176	C1orf167	Q5SNV9	1468 aa		31.33	■■■□□ 2.61
CCDC78-215	ENST00000538176	CFAP70	Q5T0N1	1121 aa		31.32	■■■□□ 2.6
CCDC78-215	ENST00000538176	DCAF11	Q8TEB1	546 aa		31.31	■■■□□ 2.6
CCDC78-215	ENST00000538176	KNDC1	Q76NI1	1749 aa		31.29	■■■□□ 2.6

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms