RNA–Protein interactions for RNA: ENST00000535958.1

TNFRSF1A-207, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 4

Gene TNFRSF1A, Length 568 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-207ENST00000535958 TET3O43151 1660 aa20.04■□□□□ 0.8
TNFRSF1A-207ENST00000535958 HDGFP51858 240 aaKnown RBP20.04■□□□□ 0.8
TNFRSF1A-207ENST00000535958 MSH6P52701 1360 aa20.04■□□□□ 0.8
TNFRSF1A-207ENST00000535958 NWD1Q149M9 1564 aa20.04■□□□□ 0.8
TNFRSF1A-207ENST00000535958 ROBO1Q9Y6N7 1651 aa20.03■□□□□ 0.8
TNFRSF1A-207ENST00000535958 GCC2Q8IWJ2 1684 aa20.02■□□□□ 0.8
TNFRSF1A-207ENST00000535958 RBM33Q96EV2 1170 aaKnown RBP20■□□□□ 0.79
TNFRSF1A-207ENST00000535958 CHGAP10645 457 aaKnown RBP19.99■□□□□ 0.79
TNFRSF1A-207ENST00000535958 RIMS2Q9UQ26 1411 aa19.99■□□□□ 0.79
TNFRSF1A-207ENST00000535958 PLEKHG1Q9ULL1 1385 aa19.98■□□□□ 0.79
TNFRSF1A-207ENST00000535958 MYO5BQ9ULV0 1848 aa19.97■□□□□ 0.79
TNFRSF1A-207ENST00000535958 UNC13BO14795 1591 aa19.97■□□□□ 0.79
TNFRSF1A-207ENST00000535958 ZFYVE9O95405 1425 aa19.96■□□□□ 0.79
TNFRSF1A-207ENST00000535958 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.96■□□□□ 0.79
TNFRSF1A-207ENST00000535958 C14orf37Q86TY3 774 aa19.95■□□□□ 0.78
TNFRSF1A-207ENST00000535958 TMEM131LA2VDJ0 1609 aa19.94■□□□□ 0.78
TNFRSF1A-207ENST00000535958 PHLPP1O60346 1717 aa19.93■□□□□ 0.78
TNFRSF1A-207ENST00000535958 CHD2O14647 1828 aaKnown RBP19.93■□□□□ 0.78
TNFRSF1A-207ENST00000535958 SLAIN2Q9P270 581 aa19.91■□□□□ 0.78
TNFRSF1A-207ENST00000535958 RGS17Q9UGC6 210 aaPredicted RBP19.91■□□□□ 0.78
TNFRSF1A-207ENST00000535958 DIP2AQ14689 1571 aa19.91■□□□□ 0.78
TNFRSF1A-207ENST00000535958 E9PCH4 1651 aa19.91■□□□□ 0.78
TNFRSF1A-207ENST00000535958 IQGAP3Q86VI3 1631 aa19.9■□□□□ 0.78
TNFRSF1A-207ENST00000535958 ROCK1Q13464 1354 aa19.89■□□□□ 0.77
TNFRSF1A-207ENST00000535958 JCADQ9P266 1359 aa19.89■□□□□ 0.77
TNFRSF1A-207ENST00000535958 TBX22Q9Y458 520 aa19.89■□□□□ 0.77
TNFRSF1A-207ENST00000535958 NCOA3Q9Y6Q9 1424 aa19.87■□□□□ 0.77
TNFRSF1A-207ENST00000535958 NUTM2DQ5VT03 806 aaPredicted RBP19.87■□□□□ 0.77
TNFRSF1A-207ENST00000535958 ITGAEP38570 1179 aa19.86■□□□□ 0.77
TNFRSF1A-207ENST00000535958 TRPM2O94759 1503 aa19.86■□□□□ 0.77
TNFRSF1A-207ENST00000535958 NUP155O75694 1391 aa19.85■□□□□ 0.77
TNFRSF1A-207ENST00000535958 ATF3P18847 181 aa19.85■□□□□ 0.77
TNFRSF1A-207ENST00000535958 PIK3R4Q99570 1358 aa19.84■□□□□ 0.77
TNFRSF1A-207ENST00000535958 POTEAQ6S8J7 498 aa19.84■□□□□ 0.77
TNFRSF1A-207ENST00000535958 CADPS2Q86UW7 1296 aa19.84■□□□□ 0.77
TNFRSF1A-207ENST00000535958 MEX3CQ5U5Q3 659 aaKnown RBP19.83■□□□□ 0.77
TNFRSF1A-207ENST00000535958 ADAMTS13Q76LX8 1427 aa19.83■□□□□ 0.76
TNFRSF1A-207ENST00000535958 COL16A1Q07092 1604 aaPredicted RBP19.82■□□□□ 0.76
TNFRSF1A-207ENST00000535958 C19orf44Q9H6X5 657 aa19.81■□□□□ 0.76
TNFRSF1A-207ENST00000535958 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.8■□□□□ 0.76
TNFRSF1A-207ENST00000535958 SPATA31A6Q5VVP1 1343 aa19.78■□□□□ 0.76
TNFRSF1A-207ENST00000535958 ZNF326Q5BKZ1 582 aaKnown RBP19.78■□□□□ 0.76
TNFRSF1A-207ENST00000535958 AHDC1Q5TGY3 1603 aaPredicted RBP19.77■□□□□ 0.76
TNFRSF1A-207ENST00000535958 SPHKAPQ2M3C7 1700 aa19.77■□□□□ 0.76
TNFRSF1A-207ENST00000535958 AMOTL2Q9Y2J4 779 aa19.77■□□□□ 0.76
TNFRSF1A-207ENST00000535958 SETD1AO15047 1707 aaKnown RBP19.76■□□□□ 0.75
TNFRSF1A-207ENST00000535958 ZNF772Q68DY9 489 aaPredicted RBP19.74■□□□□ 0.75
TNFRSF1A-207ENST00000535958 DCCP43146 1447 aa19.74■□□□□ 0.75
TNFRSF1A-207ENST00000535958 SHPRHQ149N8 1683 aa19.74■□□□□ 0.75
TNFRSF1A-207ENST00000535958 SETBP1Q9Y6X0 1596 aa19.72■□□□□ 0.75
TNFRSF1A-207ENST00000535958 LRP6O75581 1613 aa19.72■□□□□ 0.75
TNFRSF1A-207ENST00000535958 PTPRUQ92729 1446 aa19.71■□□□□ 0.75
TNFRSF1A-207ENST00000535958 XRN1Q8IZH2 1706 aaKnown RBP19.71■□□□□ 0.75
TNFRSF1A-207ENST00000535958 PPARGC1BQ86YN6 1023 aaKnown RBP19.7■□□□□ 0.74
TNFRSF1A-207ENST00000535958 NRXN3Q9Y4C0 1643 aa19.69■□□□□ 0.74
TNFRSF1A-207ENST00000535958 BRINP3Q76B58 766 aa19.69■□□□□ 0.74
TNFRSF1A-207ENST00000535958 ASXL1Q8IXJ9 1541 aa19.68■□□□□ 0.74
TNFRSF1A-207ENST00000535958 NUTM2BA6NNL0 878 aaPredicted RBP19.67■□□□□ 0.74
TNFRSF1A-207ENST00000535958 NUTM2EB1AL46 878 aaPredicted RBP19.67■□□□□ 0.74
TNFRSF1A-207ENST00000535958 NUTM2AQ8IVF1 878 aaPredicted RBP19.67■□□□□ 0.74
TNFRSF1A-207ENST00000535958 TRIM52Q96A61 297 aa19.66■□□□□ 0.74
TNFRSF1A-207ENST00000535958 KIF1BO60333 1816 aa19.65■□□□□ 0.74
TNFRSF1A-207ENST00000535958 CLTCL1P53675 1640 aa19.65■□□□□ 0.74
TNFRSF1A-207ENST00000535958 MST1RQ04912 1400 aa19.64■□□□□ 0.73
TNFRSF1A-207ENST00000535958 NHSL1Q5SYE7 1610 aa19.63■□□□□ 0.73
TNFRSF1A-207ENST00000535958 NEXMIFQ5QGS0 1516 aa19.63■□□□□ 0.73
TNFRSF1A-207ENST00000535958 ADGRL3Q9HAR2 1447 aa19.63■□□□□ 0.73
TNFRSF1A-207ENST00000535958 METP08581 1390 aa19.63■□□□□ 0.73
TNFRSF1A-207ENST00000535958 RXRBP28702 533 aa19.62■□□□□ 0.73
TNFRSF1A-207ENST00000535958 SETD5Q9C0A6 1442 aa19.61■□□□□ 0.73
TNFRSF1A-207ENST00000535958 LRRC59Q96AG4 307 aaKnown RBP19.61■□□□□ 0.73
TNFRSF1A-207ENST00000535958 NALCNQ8IZF0 1738 aa19.6■□□□□ 0.73
TNFRSF1A-207ENST00000535958 AFF2P51816 1311 aa19.58■□□□□ 0.73
TNFRSF1A-207ENST00000535958 NAIPQ13075 1403 aa19.57■□□□□ 0.72
TNFRSF1A-207ENST00000535958 RRBP1Q9P2E9 1410 aaKnown RBP19.57■□□□□ 0.72
TNFRSF1A-207ENST00000535958 VGFO15240 615 aaPredicted RBP19.56■□□□□ 0.72
TNFRSF1A-207ENST00000535958 PTCH1Q13635 1447 aa19.56■□□□□ 0.72
TNFRSF1A-207ENST00000535958 C8orf37Q96NL8 207 aa19.55■□□□□ 0.72
TNFRSF1A-207ENST00000535958 CDK12Q9NYV4 1490 aaPredicted RBP19.54■□□□□ 0.72
TNFRSF1A-207ENST00000535958 UPF1Q92900 1129 aaKnown RBP eCLIP19.54■□□□□ 0.72
TNFRSF1A-207ENST00000535958 PNPLA6Q8IY17 1366 aa19.54■□□□□ 0.72
TNFRSF1A-207ENST00000535958 DDX17Q92841 729 aaKnown RBP19.52■□□□□ 0.72
TNFRSF1A-207ENST00000535958 SLC4A1APQ9BWU0 796 aaKnown RBP19.52■□□□□ 0.72
TNFRSF1A-207ENST00000535958 C1orf167Q5SNV9 1468 aa19.52■□□□□ 0.72
TNFRSF1A-207ENST00000535958 RPGRIP1LQ68CZ1 1315 aa19.51■□□□□ 0.71
TNFRSF1A-207ENST00000535958 HFM1A2PYH4 1435 aa19.5■□□□□ 0.71
TNFRSF1A-207ENST00000535958 ROBO2Q9HCK4 1378 aa19.48■□□□□ 0.71
TNFRSF1A-207ENST00000535958 ADAMTS2O95450 1211 aa19.48■□□□□ 0.71
TNFRSF1A-207ENST00000535958 RBM6P78332 1123 aaKnown RBP19.48■□□□□ 0.71
TNFRSF1A-207ENST00000535958 NGLY1Q96IV0 654 aa19.48■□□□□ 0.71
TNFRSF1A-207ENST00000535958 QTRT2Q9H974 415 aaKnown RBP19.48■□□□□ 0.71
TNFRSF1A-207ENST00000535958 PPLO60437 1756 aa19.47■□□□□ 0.71
TNFRSF1A-207ENST00000535958 RGS12O14924 1447 aa19.45■□□□□ 0.7
TNFRSF1A-207ENST00000535958 LAMC1P11047 1609 aa19.45■□□□□ 0.7
TNFRSF1A-207ENST00000535958 PRAG1Q86YV5 1406 aa19.44■□□□□ 0.7
TNFRSF1A-207ENST00000535958 ORAI2Q96SN7 254 aa19.44■□□□□ 0.7
TNFRSF1A-207ENST00000535958 SOS2Q07890 1332 aaPredicted RBP19.43■□□□□ 0.7
TNFRSF1A-207ENST00000535958 CCDC144AA2RUR9 1427 aa19.42■□□□□ 0.7
TNFRSF1A-207ENST00000535958 CDC42BPGQ6DT37 1551 aa19.41■□□□□ 0.7
TNFRSF1A-207ENST00000535958 USP21Q9UK80 565 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms