RNA–Protein interactions for RNA: ENST00000535927.5

VAMP1-205, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 4

Gene VAMP1, Length 578 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-205ENST00000535927 UBR1Q8IWV7 1749 aa23.36■■□□□ 1.33
VAMP1-205ENST00000535927 VGFO15240 615 aaPredicted RBP23.36■■□□□ 1.33
VAMP1-205ENST00000535927 DMRT2Q9Y5R5 561 aa23.36■■□□□ 1.33
VAMP1-205ENST00000535927 ZNF326Q5BKZ1 582 aaKnown RBP23.35■■□□□ 1.33
VAMP1-205ENST00000535927 ZFYVE9O95405 1425 aa23.34■■□□□ 1.33
VAMP1-205ENST00000535927 RGL3Q3MIN7 710 aa23.34■■□□□ 1.33
VAMP1-205ENST00000535927 L3MBTL2Q969R5 705 aa23.34■■□□□ 1.33
VAMP1-205ENST00000535927 TMEM2Q9UHN6 1383 aa23.32■■□□□ 1.32
VAMP1-205ENST00000535927 SLIT1O75093 1534 aa23.32■■□□□ 1.32
VAMP1-205ENST00000535927 EID1Q9Y6B2 187 aa23.31■■□□□ 1.32
VAMP1-205ENST00000535927 MYO5BQ9ULV0 1848 aa23.3■■□□□ 1.32
VAMP1-205ENST00000535927 ARHGAP23Q9P227 1491 aa23.3■■□□□ 1.32
VAMP1-205ENST00000535927 DCAF11Q8TEB1 546 aa23.29■■□□□ 1.32
VAMP1-205ENST00000535927 MYOM2P54296 1465 aa23.29■■□□□ 1.32
VAMP1-205ENST00000535927 DISP3Q9P2K9 1392 aa23.28■■□□□ 1.32
VAMP1-205ENST00000535927 PPLO60437 1756 aa23.28■■□□□ 1.32
VAMP1-205ENST00000535927 STRCQ7RTU9 1775 aa23.28■■□□□ 1.32
VAMP1-205ENST00000535927 PPP1R15AO75807 674 aaPredicted RBP23.28■■□□□ 1.32
VAMP1-205ENST00000535927 IFT172Q9UG01 1749 aa23.27■■□□□ 1.32
VAMP1-205ENST00000535927 RIMS2Q9UQ26 1411 aa23.26■■□□□ 1.31
VAMP1-205ENST00000535927 ANKLE2Q86XL3 938 aa23.26■■□□□ 1.31
VAMP1-205ENST00000535927 NEXMIFQ5QGS0 1516 aa23.26■■□□□ 1.31
VAMP1-205ENST00000535927 TXNDC2Q86VQ3 553 aa23.23■■□□□ 1.31
VAMP1-205ENST00000535927 NRXN1Q9ULB1 1477 aa23.22■■□□□ 1.31
VAMP1-205ENST00000535927 KDM2AQ9Y2K7 1162 aa23.2■■□□□ 1.3
VAMP1-205ENST00000535927 SCAF11Q99590 1463 aaKnown RBP23.19■■□□□ 1.3
VAMP1-205ENST00000535927 PLEKHG1Q9ULL1 1385 aa23.18■■□□□ 1.3
VAMP1-205ENST00000535927 PRAG1Q86YV5 1406 aa23.17■■□□□ 1.3
VAMP1-205ENST00000535927 SOCS7O14512 581 aa23.17■■□□□ 1.3
VAMP1-205ENST00000535927 ILDR2Q71H61 639 aa23.17■■□□□ 1.3
VAMP1-205ENST00000535927 KIAA1210Q9ULL0 1709 aa23.16■■□□□ 1.3
VAMP1-205ENST00000535927 LTKP29376 864 aa23.15■■□□□ 1.3
VAMP1-205ENST00000535927 MED14O60244 1454 aa23.15■■□□□ 1.3
VAMP1-205ENST00000535927 PIK3C2GO75747 1445 aa23.15■■□□□ 1.3
VAMP1-205ENST00000535927 ADGRF5Q8IZF2 1346 aa23.14■■□□□ 1.3
VAMP1-205ENST00000535927 C14orf93Q9H972 538 aaKnown RBP23.14■■□□□ 1.29
VAMP1-205ENST00000535927 SETBP1Q9Y6X0 1596 aa23.13■■□□□ 1.29
VAMP1-205ENST00000535927 LAMC1P11047 1609 aa23.12■■□□□ 1.29
VAMP1-205ENST00000535927 POLR1AO95602 1720 aaPredicted RBP23.11■■□□□ 1.29
VAMP1-205ENST00000535927 TBX22Q9Y458 520 aa23.11■■□□□ 1.29
VAMP1-205ENST00000535927 DIP2AQ14689 1571 aa23.09■■□□□ 1.29
VAMP1-205ENST00000535927 NBPF8Q3BBV2 869 aa23.08■■□□□ 1.29
VAMP1-205ENST00000535927 PIK3R4Q99570 1358 aa23.07■■□□□ 1.28
VAMP1-205ENST00000535927 NUTM2DQ5VT03 806 aaPredicted RBP23.07■■□□□ 1.28
VAMP1-205ENST00000535927 NPHP4O75161 1426 aaPredicted RBP23.07■■□□□ 1.28
VAMP1-205ENST00000535927 RALGAPBQ86X10 1494 aa23.06■■□□□ 1.28
VAMP1-205ENST00000535927 BCANQ96GW7 911 aa23.06■■□□□ 1.28
VAMP1-205ENST00000535927 GPRASP1Q5JY77 1395 aa23.05■■□□□ 1.28
VAMP1-205ENST00000535927 TRPM1Q7Z4N2 1603 aa23.04■■□□□ 1.28
VAMP1-205ENST00000535927 ALKQ9UM73 1620 aa23.04■■□□□ 1.28
VAMP1-205ENST00000535927 IQSEC2Q5JU85 1478 aa23.04■■□□□ 1.28
VAMP1-205ENST00000535927 LTBP4Q8N2S1 1624 aa23.04■■□□□ 1.28
VAMP1-205ENST00000535927 CFAP70Q5T0N1 1121 aa23.03■■□□□ 1.28
VAMP1-205ENST00000535927 NCKAP5LQ9HCH0 1330 aa23.03■■□□□ 1.28
VAMP1-205ENST00000535927 IQGAP1P46940 1657 aa23.03■■□□□ 1.28
VAMP1-205ENST00000535927 ADAMTS13Q76LX8 1427 aa23.02■■□□□ 1.28
VAMP1-205ENST00000535927 ROCK2O75116 1388 aaKnown RBP23.01■■□□□ 1.27
VAMP1-205ENST00000535927 NRXN3Q9Y4C0 1643 aa23■■□□□ 1.27
VAMP1-205ENST00000535927 SIRT1Q96EB6 747 aa22.99■■□□□ 1.27
VAMP1-205ENST00000535927 SLC24A1O60721 1099 aa22.98■■□□□ 1.27
VAMP1-205ENST00000535927 CARD11Q9BXL7 1154 aa22.97■■□□□ 1.27
VAMP1-205ENST00000535927 SETD1AO15047 1707 aaKnown RBP22.96■■□□□ 1.27
VAMP1-205ENST00000535927 ADGRB1O14514 1584 aa22.95■■□□□ 1.26
VAMP1-205ENST00000535927 NBPF1Q3BBV0 1214 aa22.95■■□□□ 1.26
VAMP1-205ENST00000535927 ABCC11Q96J66 1382 aa22.95■■□□□ 1.26
VAMP1-205ENST00000535927 LRPPRCP42704 1394 aaKnown RBP22.94■■□□□ 1.26
VAMP1-205ENST00000535927 SLC26A8Q96RN1 970 aa22.94■■□□□ 1.26
VAMP1-205ENST00000535927 EIF3AQ14152 1382 aaKnown RBP22.93■■□□□ 1.26
VAMP1-205ENST00000535927 YTHDC2Q9H6S0 1430 aaKnown RBP22.91■■□□□ 1.26
VAMP1-205ENST00000535927 METP08581 1390 aa22.9■■□□□ 1.26
VAMP1-205ENST00000535927 CHD2O14647 1828 aaKnown RBP22.9■■□□□ 1.26
VAMP1-205ENST00000535927 UBAP1LF5GYI3 381 aa22.9■■□□□ 1.26
VAMP1-205ENST00000535927 KCNA6P17658 529 aa22.9■■□□□ 1.26
VAMP1-205ENST00000535927 EIF4G2P78344 907 aaKnown RBP eCLIP22.9■■□□□ 1.26
VAMP1-205ENST00000535927 TECPR2O15040 1411 aa22.9■■□□□ 1.26
VAMP1-205ENST00000535927 DLC1Q96QB1 1528 aa22.89■■□□□ 1.26
VAMP1-205ENST00000535927 TMEM132EQ6IEE7 984 aa22.89■■□□□ 1.25
VAMP1-205ENST00000535927 ZNF335Q9H4Z2 1342 aaPredicted RBP22.87■■□□□ 1.25
VAMP1-205ENST00000535927 FAM135BQ49AJ0 1406 aa22.87■■□□□ 1.25
VAMP1-205ENST00000535927 KNDC1Q76NI1 1749 aa22.87■■□□□ 1.25
VAMP1-205ENST00000535927 AMOTL2Q9Y2J4 779 aa22.86■■□□□ 1.25
VAMP1-205ENST00000535927 ASXL1Q8IXJ9 1541 aa22.86■■□□□ 1.25
VAMP1-205ENST00000535927 USP47Q96K76 1375 aa22.84■■□□□ 1.25
VAMP1-205ENST00000535927 PTCH1Q13635 1447 aa22.83■■□□□ 1.25
VAMP1-205ENST00000535927 NWD1Q149M9 1564 aa22.82■■□□□ 1.24
VAMP1-205ENST00000535927 TRAK1Q9UPV9 953 aa22.82■■□□□ 1.24
VAMP1-205ENST00000535927 XRN1Q8IZH2 1706 aaKnown RBP22.82■■□□□ 1.24
VAMP1-205ENST00000535927 CPS1P31327 1500 aa22.82■■□□□ 1.24
VAMP1-205ENST00000535927 NKTRP30414 1462 aaKnown RBP22.81■■□□□ 1.24
VAMP1-205ENST00000535927 SBNO2Q9Y2G9 1366 aa22.81■■□□□ 1.24
VAMP1-205ENST00000535927 PTPRUQ92729 1446 aa22.81■■□□□ 1.24
VAMP1-205ENST00000535927 NCOA3Q9Y6Q9 1424 aa22.81■■□□□ 1.24
VAMP1-205ENST00000535927 STK26Q9P289 416 aa22.8■■□□□ 1.24
VAMP1-205ENST00000535927 CENPJQ9HC77 1338 aaPredicted RBP22.8■■□□□ 1.24
VAMP1-205ENST00000535927 SENP3Q9H4L4 574 aaPredicted RBP22.79■■□□□ 1.24
VAMP1-205ENST00000535927 POGKQ9P215 609 aa22.79■■□□□ 1.24
VAMP1-205ENST00000535927 ARHGEF28Q8N1W1 1705 aaKnown RBP22.77■■□□□ 1.24
VAMP1-205ENST00000535927 ST20-MTHFSA0A0A6YYL1 179 aa22.76■■□□□ 1.23
VAMP1-205ENST00000535927 HSPA5P11021 654 aaKnown RBP22.76■■□□□ 1.23
VAMP1-205ENST00000535927 CDCA8Q53HL2 280 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms