RNA–Protein interactions for RNA: ENST00000534356.1

CASP4-213, Transcript of caspase 4, humanhuman

TSL 1 (best)

Gene CASP4, Length 771 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-213ENST00000534356 DAXXQ9UER7 740 aaPredicted RBP13.99□□□□□ -0.17
CASP4-213ENST00000534356 LAPTM4BQ86VI4 370 aa13.98□□□□□ -0.17
CASP4-213ENST00000534356 FAM117AQ9C073 453 aa13.98□□□□□ -0.17
CASP4-213ENST00000534356 FAM217BQ9NTX9 383 aaPredicted RBP13.98□□□□□ -0.17
CASP4-213ENST00000534356 SSTR3P32745 418 aaPredicted RBP13.97□□□□□ -0.17
CASP4-213ENST00000534356 MRPL50Q8N5N7 158 aaKnown RBP13.97□□□□□ -0.17
CASP4-213ENST00000534356 IL27Q8NEV9 243 aa13.96□□□□□ -0.17
CASP4-213ENST00000534356 SWT1Q5T5J6 900 aaKnown RBP13.95□□□□□ -0.18
CASP4-213ENST00000534356 ZFRQ96KR1 1074 aaKnown RBP13.93□□□□□ -0.18
CASP4-213ENST00000534356 TMEM132AQ24JP5 1023 aa13.92□□□□□ -0.18
CASP4-213ENST00000534356 SAMD7Q7Z3H4 446 aa13.92□□□□□ -0.18
CASP4-213ENST00000534356 PLEKHG3A1L390 1219 aa13.91□□□□□ -0.18
CASP4-213ENST00000534356 STAC3Q96MF2 364 aa13.91□□□□□ -0.18
CASP4-213ENST00000534356 DDX11L8A8MPP1 907 aa13.9□□□□□ -0.18
CASP4-213ENST00000534356 HDGFP51858 240 aaKnown RBP13.89□□□□□ -0.19
CASP4-213ENST00000534356 DDRGK1Q96HY6 314 aa13.89□□□□□ -0.19
CASP4-213ENST00000534356 BEGAINQ9BUH8 593 aa13.89□□□□□ -0.19
CASP4-213ENST00000534356 SULF1Q8IWU6 871 aa13.88□□□□□ -0.19
CASP4-213ENST00000534356 CD46P15529 392 aa13.87□□□□□ -0.19
CASP4-213ENST00000534356 GOLGA8CPA6NN73 597 aa13.85□□□□□ -0.19
CASP4-213ENST00000534356 SLC10A3P09131 477 aa13.84□□□□□ -0.19
CASP4-213ENST00000534356 RDH13Q8NBN7 331 aa13.84□□□□□ -0.19
CASP4-213ENST00000534356 SLF2Q8IX21 1173 aa13.83□□□□□ -0.2
CASP4-213ENST00000534356 RNF40O75150 1001 aa13.82□□□□□ -0.2
CASP4-213ENST00000534356 ANKK1Q8NFD2 765 aa13.82□□□□□ -0.2
CASP4-213ENST00000534356 LRCH3Q96II8 777 aa13.82□□□□□ -0.2
CASP4-213ENST00000534356 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.81□□□□□ -0.2
CASP4-213ENST00000534356 SLC4A3P48751 1232 aa13.8□□□□□ -0.2
CASP4-213ENST00000534356 WNT2BQ93097 391 aa13.8□□□□□ -0.2
CASP4-213ENST00000534356 RSPH4AQ5TD94 716 aa13.79□□□□□ -0.2
CASP4-213ENST00000534356 SOWAHBA6NEL2 793 aa13.78□□□□□ -0.2
CASP4-213ENST00000534356 BCAMP50895 628 aa13.78□□□□□ -0.2
CASP4-213ENST00000534356 GCGRP47871 477 aa13.76□□□□□ -0.21
CASP4-213ENST00000534356 SPIRE2Q8WWL2 714 aa13.76□□□□□ -0.21
CASP4-213ENST00000534356 TBC1D2Q9BYX2 928 aa13.76□□□□□ -0.21
CASP4-213ENST00000534356 HPS5Q9UPZ3 1129 aa13.74□□□□□ -0.21
CASP4-213ENST00000534356 CFHP08603 1231 aa13.73□□□□□ -0.21
CASP4-213ENST00000534356 NUTM1Q86Y26 1132 aa13.73□□□□□ -0.21
CASP4-213ENST00000534356 KCTD12Q96CX2 325 aaKnown RBP13.73□□□□□ -0.21
CASP4-213ENST00000534356 SH3D19Q5HYK7 790 aa13.72□□□□□ -0.21
CASP4-213ENST00000534356 MYSM1Q5VVJ2 828 aa13.72□□□□□ -0.21
CASP4-213ENST00000534356 RSPH6AQ9H0K4 717 aa13.72□□□□□ -0.21
CASP4-213ENST00000534356 KDM4AO75164 1064 aa13.71□□□□□ -0.21
CASP4-213ENST00000534356 PPP4CP60510 307 aa13.71□□□□□ -0.21
CASP4-213ENST00000534356 THSD4Q6ZMP0 1018 aa13.71□□□□□ -0.21
CASP4-213ENST00000534356 GOPCQ9HD26 462 aa13.71□□□□□ -0.21
CASP4-213ENST00000534356 TSR3Q9UJK0 312 aaKnown RBP13.7□□□□□ -0.22
CASP4-213ENST00000534356 DIXDC1Q155Q3 683 aa13.69□□□□□ -0.22
CASP4-213ENST00000534356 POLR3EQ9NVU0 708 aa13.69□□□□□ -0.22
CASP4-213ENST00000534356 SKIV2LQ15477 1246 aaKnown RBP13.68□□□□□ -0.22
CASP4-213ENST00000534356 NECTIN2Q92692 538 aa13.68□□□□□ -0.22
CASP4-213ENST00000534356 WBP1LQ9NX94 342 aa13.67□□□□□ -0.22
CASP4-213ENST00000534356 MYT1LQ9UL68 1186 aa13.67□□□□□ -0.22
CASP4-213ENST00000534356 MOXD2PA6NHM9 499 aa13.66□□□□□ -0.22
CASP4-213ENST00000534356 NDUFV2P19404 249 aa13.66□□□□□ -0.22
CASP4-213ENST00000534356 FUT2Q10981 343 aa13.66□□□□□ -0.22
CASP4-213ENST00000534356 KMT5BQ4FZB7 885 aa13.66□□□□□ -0.22
CASP4-213ENST00000534356 USP46P62068 366 aa13.65□□□□□ -0.22
CASP4-213ENST00000534356 PROCA1Q8NCQ7 364 aaPredicted RBP13.65□□□□□ -0.22
CASP4-213ENST00000534356 HOXA2O43364 376 aa13.64□□□□□ -0.23
CASP4-213ENST00000534356 ACTN4O43707 911 aaKnown RBP13.64□□□□□ -0.23
CASP4-213ENST00000534356 APLP1P51693 650 aa13.64□□□□□ -0.23
CASP4-213ENST00000534356 RIC3Q7Z5B4 369 aa13.64□□□□□ -0.23
CASP4-213ENST00000534356 SPNS2Q8IVW8 549 aa13.64□□□□□ -0.23
CASP4-213ENST00000534356 PCMTD1Q96MG8 357 aaPredicted RBP13.64□□□□□ -0.23
CASP4-213ENST00000534356 LIMD1Q9UGP4 676 aa13.64□□□□□ -0.23
CASP4-213ENST00000534356 CLK2P49760 499 aaKnown RBP13.63□□□□□ -0.23
CASP4-213ENST00000534356 HLA-CQ95604 372 aa13.63□□□□□ -0.23
CASP4-213ENST00000534356 SPTLC1O15269 473 aa13.62□□□□□ -0.23
CASP4-213ENST00000534356 RSBN1LQ6PCB5 846 aaPredicted RBP13.62□□□□□ -0.23
CASP4-213ENST00000534356 ATP6V1AP38606 617 aa13.6□□□□□ -0.23
CASP4-213ENST00000534356 PTPN5P54829 565 aa13.6□□□□□ -0.23
CASP4-213ENST00000534356 GUCA2AQ02747 115 aa13.6□□□□□ -0.23
CASP4-213ENST00000534356 PRR14Q9BWN1 585 aa13.6□□□□□ -0.23
CASP4-213ENST00000534356 ATP1B4Q9UN42 357 aaPredicted RBP13.6□□□□□ -0.23
CASP4-213ENST00000534356 GTF3C3Q9Y5Q9 886 aa13.6□□□□□ -0.23
CASP4-213ENST00000534356 PUS10Q3MIT2 529 aaKnown RBP13.59□□□□□ -0.23
CASP4-213ENST00000534356 GRIPAP1Q4V328 841 aa13.58□□□□□ -0.24
CASP4-213ENST00000534356 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.58□□□□□ -0.24
CASP4-213ENST00000534356 PCDHB15Q9Y5E8 787 aa13.58□□□□□ -0.24
CASP4-213ENST00000534356 FDX1P10109 184 aa13.57□□□□□ -0.24
CASP4-213ENST00000534356 GJA5P36382 358 aa13.57□□□□□ -0.24
CASP4-213ENST00000534356 CSPP1Q1MSJ5 1256 aa13.57□□□□□ -0.24
CASP4-213ENST00000534356 MORN1Q5T089 497 aa13.56□□□□□ -0.24
CASP4-213ENST00000534356 PCDHGC3Q9UN70 934 aa13.56□□□□□ -0.24
CASP4-213ENST00000534356 TUSC1Q2TAM9 212 aa13.55□□□□□ -0.24
CASP4-213ENST00000534356 RNF166Q96A37 237 aaPredicted RBP13.55□□□□□ -0.24
CASP4-213ENST00000534356 FBXO31Q5XUX0 539 aaPredicted RBP13.54□□□□□ -0.24
CASP4-213ENST00000534356 PCDHB3Q9Y5E6 796 aa13.54□□□□□ -0.24
CASP4-213ENST00000534356 MMRN1Q13201 1228 aa13.53□□□□□ -0.24
CASP4-213ENST00000534356 SLC27A5Q9Y2P5 690 aa13.53□□□□□ -0.24
CASP4-213ENST00000534356 QPCTQ16769 361 aa13.52□□□□□ -0.25
CASP4-213ENST00000534356 NYAP1Q6ZVC0 841 aa13.52□□□□□ -0.25
CASP4-213ENST00000534356 LILRB3O75022 631 aa13.5□□□□□ -0.25
CASP4-213ENST00000534356 BLOC1S3Q6QNY0 202 aa13.5□□□□□ -0.25
CASP4-213ENST00000534356 CABLES1Q8TDN4 633 aa13.5□□□□□ -0.25
CASP4-213ENST00000534356 HRCP23327 699 aa13.48□□□□□ -0.25
CASP4-213ENST00000534356 SCUBE3Q8IX30 993 aa13.48□□□□□ -0.25
CASP4-213ENST00000534356 SYMPKQ92797 1274 aaKnown RBP13.48□□□□□ -0.25
CASP4-213ENST00000534356 COPS2P61201 443 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms