RNA–Protein interactions for RNA: ENST00000534356.1

CASP4-213, Transcript of caspase 4, humanhuman

TSL 1 (best)

Gene CASP4, Length 771 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-213ENST00000534356 AEBP2Q6ZN18 517 aaPredicted RBP32.38■■■□□ 2.77
CASP4-213ENST00000534356 CHIC1Q5VXU3 224 aa31.84■■■□□ 2.69
CASP4-213ENST00000534356 PHF23Q9BUL5 403 aaPredicted RBP28.08■■■□□ 2.09
CASP4-213ENST00000534356 SENP3Q9H4L4 574 aaPredicted RBP27.36■■□□□ 1.97
CASP4-213ENST00000534356 PLPPR3Q6T4P5 718 aa25.95■■□□□ 1.74
CASP4-213ENST00000534356 FOXD1Q16676 465 aa25.41■■□□□ 1.66
CASP4-213ENST00000534356 PPP6R1Q9UPN7 881 aa24.7■■□□□ 1.54
CASP4-213ENST00000534356 ADRA2BP18089 450 aa24.68■■□□□ 1.54
CASP4-213ENST00000534356 PIAS4Q8N2W9 510 aaPredicted RBP24■■□□□ 1.43
CASP4-213ENST00000534356 MSH5O43196 834 aa23.26■■□□□ 1.31
CASP4-213ENST00000534356 POTEDQ86YR6 584 aa23.16■■□□□ 1.3
CASP4-213ENST00000534356 PPP4R3CPQ6ZMV5 832 aa22.94■■□□□ 1.26
CASP4-213ENST00000534356 KCNA4P22459 653 aa22.73■■□□□ 1.23
CASP4-213ENST00000534356 SCAF1Q9H7N4 1312 aaKnown RBP22.49■■□□□ 1.19
CASP4-213ENST00000534356 NCBP3Q53F19 620 aaKnown RBP22.36■■□□□ 1.17
CASP4-213ENST00000534356 MAPK8IP2Q13387 824 aaPredicted RBP22.33■■□□□ 1.17
CASP4-213ENST00000534356 CNKSR2Q8WXI2 1034 aa22.2■■□□□ 1.14
CASP4-213ENST00000534356 NPM3O75607 178 aaKnown RBP22.09■■□□□ 1.13
CASP4-213ENST00000534356 DMRT2Q9Y5R5 561 aa21.9■■□□□ 1.1
CASP4-213ENST00000534356 RNF216Q9NWF9 866 aaPredicted RBP21.7■■□□□ 1.06
CASP4-213ENST00000534356 SLC4A1APQ9BWU0 796 aaKnown RBP21.67■■□□□ 1.06
CASP4-213ENST00000534356 HOXD11P31277 338 aaPredicted RBP21.55■■□□□ 1.04
CASP4-213ENST00000534356 EHMT2Q96KQ7 1210 aa21.39■■□□□ 1.01
CASP4-213ENST00000534356 DNAJC5BQ9UF47 199 aa21.36■■□□□ 1.01
CASP4-213ENST00000534356 CSRNP3Q8WYN3 585 aa21.03■□□□□ 0.96
CASP4-213ENST00000534356 DCAF8L1A6NGE4 600 aa20.95■□□□□ 0.94
CASP4-213ENST00000534356 ZBTB22O15209 634 aa20.95■□□□□ 0.94
CASP4-213ENST00000534356 SLC4A2P04920 1241 aa20.81■□□□□ 0.92
CASP4-213ENST00000534356 FOXD4L1Q9NU39 408 aa20.8■□□□□ 0.92
CASP4-213ENST00000534356 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.54■□□□□ 0.88
CASP4-213ENST00000534356 MYCNP04198 464 aaPredicted RBP20.37■□□□□ 0.85
CASP4-213ENST00000534356 U3KPZ7 1027 aaPredicted RBP20.26■□□□□ 0.83
CASP4-213ENST00000534356 ATXN8OSP0DMR3 200 aa20.03■□□□□ 0.8
CASP4-213ENST00000534356 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.02■□□□□ 0.8
CASP4-213ENST00000534356 HNRNPUL2Q1KMD3 747 aaKnown RBP20.02■□□□□ 0.8
CASP4-213ENST00000534356 RNF39Q9H2S5 420 aa20■□□□□ 0.79
CASP4-213ENST00000534356 SAMD1Q6SPF0 538 aaPredicted RBP19.99■□□□□ 0.79
CASP4-213ENST00000534356 ATF5Q9Y2D1 282 aaPredicted RBP19.88■□□□□ 0.77
CASP4-213ENST00000534356 C1QBPQ07021 282 aaKnown RBP19.74■□□□□ 0.75
CASP4-213ENST00000534356 APLP2Q06481 763 aa19.73■□□□□ 0.75
CASP4-213ENST00000534356 SPINK5Q9NQ38 1064 aaPredicted RBP19.64■□□□□ 0.73
CASP4-213ENST00000534356 CACNB1Q02641 598 aaPredicted RBP19.57■□□□□ 0.72
CASP4-213ENST00000534356 CAPN15O75808 1086 aa19.51■□□□□ 0.71
CASP4-213ENST00000534356 ZNF219Q9P2Y4 722 aaPredicted RBP19.51■□□□□ 0.71
CASP4-213ENST00000534356 TRHP20396 242 aaPredicted RBP19.5■□□□□ 0.71
CASP4-213ENST00000534356 POLA2Q14181 598 aa19.24■□□□□ 0.67
CASP4-213ENST00000534356 ABCB7O75027 752 aa19.19■□□□□ 0.66
CASP4-213ENST00000534356 DSG3P32926 999 aa19.13■□□□□ 0.65
CASP4-213ENST00000534356 MKRN4PQ13434 485 aaPredicted RBP19.02■□□□□ 0.64
CASP4-213ENST00000534356 FKBP8Q14318 412 aa18.97■□□□□ 0.63
CASP4-213ENST00000534356 FBLN2P98095 1184 aa18.94■□□□□ 0.62
CASP4-213ENST00000534356 ZBTB12Q9Y330 459 aaPredicted RBP18.87■□□□□ 0.61
CASP4-213ENST00000534356 SPDYE4A6NLX3 237 aa18.68■□□□□ 0.58
CASP4-213ENST00000534356 OSCARQ8IYS5 282 aa18.58■□□□□ 0.56
CASP4-213ENST00000534356 SPDYE2BA6NHP3 402 aa18.42■□□□□ 0.54
CASP4-213ENST00000534356 SPDYE6P0CI01 402 aa18.42■□□□□ 0.54
CASP4-213ENST00000534356 SPDYE2Q495Y8 402 aa18.42■□□□□ 0.54
CASP4-213ENST00000534356 PROM2Q8N271 834 aa18.42■□□□□ 0.54
CASP4-213ENST00000534356 ZNF692Q9BU19 519 aaPredicted RBP18.41■□□□□ 0.54
CASP4-213ENST00000534356 SSUH2Q9Y2M2 353 aa18.33■□□□□ 0.52
CASP4-213ENST00000534356 PABPN1Q86U42 306 aaKnown RBP eCLIP18.19■□□□□ 0.5
CASP4-213ENST00000534356 FBXO3Q9UK99 471 aa18.17■□□□□ 0.5
CASP4-213ENST00000534356 RBM42Q9BTD8 480 aaKnown RBP18.16■□□□□ 0.5
CASP4-213ENST00000534356 AKT1S1Q96B36 256 aa18.03■□□□□ 0.48
CASP4-213ENST00000534356 POTEHQ6S545 545 aa17.97■□□□□ 0.47
CASP4-213ENST00000534356 VASPP50552 380 aaPredicted RBP17.96■□□□□ 0.47
CASP4-213ENST00000534356 STAG3Q9UJ98 1225 aa17.89■□□□□ 0.45
CASP4-213ENST00000534356 REM2Q8IYK8 340 aaPredicted RBP17.88■□□□□ 0.45
CASP4-213ENST00000534356 SPDYE1Q8NFV5 336 aaPredicted RBP17.81■□□□□ 0.44
CASP4-213ENST00000534356 IFNLR1Q8IU57 520 aaPredicted RBP17.76■□□□□ 0.43
CASP4-213ENST00000534356 RTN4Q9NQC3 1192 aaKnown RBP17.75■□□□□ 0.43
CASP4-213ENST00000534356 CLEC11AQ9Y240 323 aa17.75■□□□□ 0.43
CASP4-213ENST00000534356 AMER1Q5JTC6 1135 aaPredicted RBP17.72■□□□□ 0.43
CASP4-213ENST00000534356 MIER1Q8N108 512 aa17.69■□□□□ 0.42
CASP4-213ENST00000534356 PITPNM1O00562 1244 aa17.68■□□□□ 0.42
CASP4-213ENST00000534356 PLCD3Q8N3E9 789 aa17.68■□□□□ 0.42
CASP4-213ENST00000534356 PRR29P0C7W0 189 aa17.61■□□□□ 0.41
CASP4-213ENST00000534356 KLHL34Q8N239 644 aa17.59■□□□□ 0.41
CASP4-213ENST00000534356 PLEKHG5O94827 1062 aa17.52■□□□□ 0.4
CASP4-213ENST00000534356 CREBZFQ9NS37 354 aa17.48■□□□□ 0.39
CASP4-213ENST00000534356 SPOCK2Q92563 424 aa17.47■□□□□ 0.39
CASP4-213ENST00000534356 ZBTB47Q9UFB7 747 aaPredicted RBP17.42■□□□□ 0.38
CASP4-213ENST00000534356 MNX1P50219 401 aaPredicted RBP17.34■□□□□ 0.37
CASP4-213ENST00000534356 CHRDL2Q6WN34 429 aa17.34■□□□□ 0.37
CASP4-213ENST00000534356 CHADLQ6NUI6 762 aa17.31■□□□□ 0.36
CASP4-213ENST00000534356 FXR2P51116 673 aaKnown RBP eCLIP17.28■□□□□ 0.36
CASP4-213ENST00000534356 PKD2Q13563 968 aa17.27■□□□□ 0.36
CASP4-213ENST00000534356 PRKAR2AP13861 404 aaKnown RBP17.23■□□□□ 0.35
CASP4-213ENST00000534356 NUBP1P53384 320 aa17.23■□□□□ 0.35
CASP4-213ENST00000534356 PIP4P2Q8N4L2 257 aa17.2■□□□□ 0.34
CASP4-213ENST00000534356 CIZ1Q9ULV3 898 aaPredicted RBP17.17■□□□□ 0.34
CASP4-213ENST00000534356 NPM1P06748 294 aaKnown RBP eCLIP17.15■□□□□ 0.34
CASP4-213ENST00000534356 FARP1Q9Y4F1 1045 aaPredicted RBP17.15■□□□□ 0.34
CASP4-213ENST00000534356 RASEFQ8IZ41 740 aa17.1■□□□□ 0.33
CASP4-213ENST00000534356 ECM2O94769 699 aaPredicted RBP17.09■□□□□ 0.33
CASP4-213ENST00000534356 DCAF8Q5TAQ9 597 aa17.07■□□□□ 0.32
CASP4-213ENST00000534356 GSE1Q14687 1217 aa17.06■□□□□ 0.32
CASP4-213ENST00000534356 FAM212AQ96EL1 285 aa17.04■□□□□ 0.32
CASP4-213ENST00000534356 RGL2O15211 777 aa16.95■□□□□ 0.3
CASP4-213ENST00000534356 TRIM41Q8WV44 630 aa16.95■□□□□ 0.3
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