RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 KCNA6P17658 529 aa23.34■■□□□ 1.33
CPSF1-211ENST00000533492 RIMS2Q9UQ26 1411 aa23.33■■□□□ 1.33
CPSF1-211ENST00000533492 HSPA1LP34931 641 aa23.33■■□□□ 1.33
CPSF1-211ENST00000533492 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.33■■□□□ 1.33
CPSF1-211ENST00000533492 MYO5BQ9ULV0 1848 aa23.33■■□□□ 1.32
CPSF1-211ENST00000533492 TMEM131LA2VDJ0 1609 aa23.33■■□□□ 1.32
CPSF1-211ENST00000533492 ZFYVE9O95405 1425 aa23.31■■□□□ 1.32
CPSF1-211ENST00000533492 PROSER2Q86WR7 435 aaPredicted RBP23.3■■□□□ 1.32
CPSF1-211ENST00000533492 NAIPQ13075 1403 aa23.3■■□□□ 1.32
CPSF1-211ENST00000533492 PLEKHG1Q9ULL1 1385 aa23.29■■□□□ 1.32
CPSF1-211ENST00000533492 NUTM2DQ5VT03 806 aaPredicted RBP23.28■■□□□ 1.32
CPSF1-211ENST00000533492 TRIM52Q96A61 297 aa23.27■■□□□ 1.32
CPSF1-211ENST00000533492 TMEM94Q12767 1356 aa23.26■■□□□ 1.31
CPSF1-211ENST00000533492 ALKQ9UM73 1620 aa23.26■■□□□ 1.31
CPSF1-211ENST00000533492 TBX22Q9Y458 520 aa23.24■■□□□ 1.31
CPSF1-211ENST00000533492 RBM33Q96EV2 1170 aaKnown RBP23.23■■□□□ 1.31
CPSF1-211ENST00000533492 ZNF326Q5BKZ1 582 aaKnown RBP23.22■■□□□ 1.31
CPSF1-211ENST00000533492 HFM1A2PYH4 1435 aa23.22■■□□□ 1.31
CPSF1-211ENST00000533492 XIRP1Q702N8 1843 aaKnown RBP23.22■■□□□ 1.31
CPSF1-211ENST00000533492 SPHKAPQ2M3C7 1700 aa23.21■■□□□ 1.31
CPSF1-211ENST00000533492 NKTRP30414 1462 aaKnown RBP23.19■■□□□ 1.3
CPSF1-211ENST00000533492 NWD1Q149M9 1564 aa23.18■■□□□ 1.3
CPSF1-211ENST00000533492 ILDR2Q71H61 639 aa23.17■■□□□ 1.3
CPSF1-211ENST00000533492 SLC4A1APQ9BWU0 796 aaKnown RBP23.17■■□□□ 1.3
CPSF1-211ENST00000533492 CHD2O14647 1828 aaKnown RBP23.16■■□□□ 1.3
CPSF1-211ENST00000533492 ADAMTS13Q76LX8 1427 aa23.15■■□□□ 1.3
CPSF1-211ENST00000533492 MSH6P52701 1360 aa23.14■■□□□ 1.3
CPSF1-211ENST00000533492 PIK3R4Q99570 1358 aa23.13■■□□□ 1.29
CPSF1-211ENST00000533492 C14orf37Q86TY3 774 aa23.12■■□□□ 1.29
CPSF1-211ENST00000533492 DIP2AQ14689 1571 aa23.11■■□□□ 1.29
CPSF1-211ENST00000533492 FAM135BQ49AJ0 1406 aa23.11■■□□□ 1.29
CPSF1-211ENST00000533492 TRPM2O94759 1503 aa23.11■■□□□ 1.29
CPSF1-211ENST00000533492 CLTCL1P53675 1640 aa23.1■■□□□ 1.29
CPSF1-211ENST00000533492 AMOTL2Q9Y2J4 779 aa23.09■■□□□ 1.29
CPSF1-211ENST00000533492 KIF1BO60333 1816 aa23.08■■□□□ 1.28
CPSF1-211ENST00000533492 SLAIN2Q9P270 581 aa23.07■■□□□ 1.28
CPSF1-211ENST00000533492 NCOA3Q9Y6Q9 1424 aa23.07■■□□□ 1.28
CPSF1-211ENST00000533492 MED1Q15648 1581 aaPredicted RBP23.06■■□□□ 1.28
CPSF1-211ENST00000533492 PHF23Q9BUL5 403 aaPredicted RBP23.04■■□□□ 1.28
CPSF1-211ENST00000533492 FOXD1Q16676 465 aa23.03■■□□□ 1.28
CPSF1-211ENST00000533492 C19orf44Q9H6X5 657 aa23.03■■□□□ 1.28
CPSF1-211ENST00000533492 SETBP1Q9Y6X0 1596 aa23.02■■□□□ 1.28
CPSF1-211ENST00000533492 VGFO15240 615 aaPredicted RBP23.02■■□□□ 1.28
CPSF1-211ENST00000533492 ATF3P18847 181 aa23.02■■□□□ 1.28
CPSF1-211ENST00000533492 ROBO1Q9Y6N7 1651 aa23.02■■□□□ 1.28
CPSF1-211ENST00000533492 PTPRUQ92729 1446 aa23.01■■□□□ 1.27
CPSF1-211ENST00000533492 SOCS7O14512 581 aa23.01■■□□□ 1.27
CPSF1-211ENST00000533492 CADPS2Q86UW7 1296 aa23.01■■□□□ 1.27
CPSF1-211ENST00000533492 NEXMIFQ5QGS0 1516 aa23.01■■□□□ 1.27
CPSF1-211ENST00000533492 MPHOSPH9Q99550 1183 aa23■■□□□ 1.27
CPSF1-211ENST00000533492 RPGRIP1LQ68CZ1 1315 aa23■■□□□ 1.27
CPSF1-211ENST00000533492 NRXN3Q9Y4C0 1643 aa23■■□□□ 1.27
CPSF1-211ENST00000533492 ACIN1Q9UKV3 1341 aaKnown RBP22.99■■□□□ 1.27
CPSF1-211ENST00000533492 METP08581 1390 aa22.99■■□□□ 1.27
CPSF1-211ENST00000533492 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.94■■□□□ 1.26
CPSF1-211ENST00000533492 CCDC144AA2RUR9 1427 aa22.94■■□□□ 1.26
CPSF1-211ENST00000533492 SETD5Q9C0A6 1442 aa22.94■■□□□ 1.26
CPSF1-211ENST00000533492 RGL3Q3MIN7 710 aa22.92■■□□□ 1.26
CPSF1-211ENST00000533492 XRN1Q8IZH2 1706 aaKnown RBP22.91■■□□□ 1.26
CPSF1-211ENST00000533492 PHLPP1O60346 1717 aa22.89■■□□□ 1.26
CPSF1-211ENST00000533492 DCCP43146 1447 aa22.87■■□□□ 1.25
CPSF1-211ENST00000533492 PPLO60437 1756 aa22.86■■□□□ 1.25
CPSF1-211ENST00000533492 JCADQ9P266 1359 aa22.86■■□□□ 1.25
CPSF1-211ENST00000533492 BRINP3Q76B58 766 aa22.84■■□□□ 1.25
CPSF1-211ENST00000533492 RAB3GAP2Q9H2M9 1393 aa22.84■■□□□ 1.25
CPSF1-211ENST00000533492 ADGRF5Q8IZF2 1346 aa22.82■■□□□ 1.24
CPSF1-211ENST00000533492 SPATA31E1Q6ZUB1 1445 aa22.82■■□□□ 1.24
CPSF1-211ENST00000533492 ADGRL3Q9HAR2 1447 aa22.82■■□□□ 1.24
CPSF1-211ENST00000533492 ANKRD30BQ9BXX2 1392 aa22.82■■□□□ 1.24
CPSF1-211ENST00000533492 SETD1AO15047 1707 aaKnown RBP22.79■■□□□ 1.24
CPSF1-211ENST00000533492 ROBO2Q9HCK4 1378 aa22.79■■□□□ 1.24
CPSF1-211ENST00000533492 RGS17Q9UGC6 210 aaPredicted RBP22.79■■□□□ 1.24
CPSF1-211ENST00000533492 MST1RQ04912 1400 aa22.79■■□□□ 1.24
CPSF1-211ENST00000533492 PTCH1Q13635 1447 aa22.79■■□□□ 1.24
CPSF1-211ENST00000533492 COL16A1Q07092 1604 aaPredicted RBP22.79■■□□□ 1.24
CPSF1-211ENST00000533492 AHDC1Q5TGY3 1603 aaPredicted RBP22.78■■□□□ 1.24
CPSF1-211ENST00000533492 NALCNQ8IZF0 1738 aa22.75■■□□□ 1.23
CPSF1-211ENST00000533492 STK26Q9P289 416 aa22.75■■□□□ 1.23
CPSF1-211ENST00000533492 SPATA31A6Q5VVP1 1343 aa22.75■■□□□ 1.23
CPSF1-211ENST00000533492 ASXL1Q8IXJ9 1541 aa22.74■■□□□ 1.23
CPSF1-211ENST00000533492 MEX3CQ5U5Q3 659 aaKnown RBP22.73■■□□□ 1.23
CPSF1-211ENST00000533492 PRAG1Q86YV5 1406 aa22.73■■□□□ 1.23
CPSF1-211ENST00000533492 TMEM132EQ6IEE7 984 aa22.72■■□□□ 1.23
CPSF1-211ENST00000533492 IFT172Q9UG01 1749 aa22.71■■□□□ 1.23
CPSF1-211ENST00000533492 HRCP23327 699 aa22.71■■□□□ 1.23
CPSF1-211ENST00000533492 LRRC59Q96AG4 307 aaKnown RBP22.71■■□□□ 1.23
CPSF1-211ENST00000533492 C1orf167Q5SNV9 1468 aa22.71■■□□□ 1.23
CPSF1-211ENST00000533492 POTEAQ6S8J7 498 aa22.7■■□□□ 1.22
CPSF1-211ENST00000533492 PIK3C2GO75747 1445 aa22.69■■□□□ 1.22
CPSF1-211ENST00000533492 LRPPRCP42704 1394 aaKnown RBP22.69■■□□□ 1.22
CPSF1-211ENST00000533492 DDX17Q92841 729 aaKnown RBP22.69■■□□□ 1.22
CPSF1-211ENST00000533492 NUTM2BA6NNL0 878 aaPredicted RBP22.68■■□□□ 1.22
CPSF1-211ENST00000533492 NUTM2EB1AL46 878 aaPredicted RBP22.68■■□□□ 1.22
CPSF1-211ENST00000533492 WAPLQ7Z5K2 1190 aa22.68■■□□□ 1.22
CPSF1-211ENST00000533492 NUTM2AQ8IVF1 878 aaPredicted RBP22.68■■□□□ 1.22
CPSF1-211ENST00000533492 ORAI2Q96SN7 254 aa22.67■■□□□ 1.22
CPSF1-211ENST00000533492 C14orf93Q9H972 538 aaKnown RBP22.67■■□□□ 1.22
CPSF1-211ENST00000533492 SHPRHQ149N8 1683 aa22.67■■□□□ 1.22
CPSF1-211ENST00000533492 ABCC11Q96J66 1382 aa22.66■■□□□ 1.22
CPSF1-211ENST00000533492 NHSL1Q5SYE7 1610 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms