RNA–Protein interactions for RNA: ENST00000531405.5

SSSCA1-206, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 2 BASIC

Gene SSSCA1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-206ENST00000531405 TMEM131LA2VDJ0 1609 aa28.51■■■□□ 2.15
SSSCA1-206ENST00000531405 KCNA6P17658 529 aa28.5■■■□□ 2.15
SSSCA1-206ENST00000531405 RBM33Q96EV2 1170 aaKnown RBP28.5■■■□□ 2.15
SSSCA1-206ENST00000531405 ROBO1Q9Y6N7 1651 aa28.49■■■□□ 2.15
SSSCA1-206ENST00000531405 CHD2O14647 1828 aaKnown RBP28.49■■■□□ 2.15
SSSCA1-206ENST00000531405 ZFYVE9O95405 1425 aa28.47■■■□□ 2.15
SSSCA1-206ENST00000531405 BCANQ96GW7 911 aa28.47■■■□□ 2.15
SSSCA1-206ENST00000531405 PROSER2Q86WR7 435 aaPredicted RBP28.46■■■□□ 2.15
SSSCA1-206ENST00000531405 IQGAP3Q86VI3 1631 aa28.45■■■□□ 2.14
SSSCA1-206ENST00000531405 NKTRP30414 1462 aaKnown RBP28.45■■■□□ 2.14
SSSCA1-206ENST00000531405 FAM135BQ49AJ0 1406 aa28.43■■■□□ 2.14
SSSCA1-206ENST00000531405 RIMS2Q9UQ26 1411 aa28.43■■■□□ 2.14
SSSCA1-206ENST00000531405 PLEKHG1Q9ULL1 1385 aa28.4■■■□□ 2.14
SSSCA1-206ENST00000531405 PPP1R15AO75807 674 aaPredicted RBP28.39■■■□□ 2.14
SSSCA1-206ENST00000531405 ROCK1Q13464 1354 aa28.38■■■□□ 2.13
SSSCA1-206ENST00000531405 CHGAP10645 457 aaKnown RBP28.37■■■□□ 2.13
SSSCA1-206ENST00000531405 ITGAEP38570 1179 aa28.34■■■□□ 2.13
SSSCA1-206ENST00000531405 PHLPP1O60346 1717 aa28.34■■■□□ 2.13
SSSCA1-206ENST00000531405 MSH6P52701 1360 aa28.34■■■□□ 2.13
SSSCA1-206ENST00000531405 NUTM2DQ5VT03 806 aaPredicted RBP28.33■■■□□ 2.13
SSSCA1-206ENST00000531405 PPARGC1BQ86YN6 1023 aaKnown RBP28.33■■■□□ 2.13
SSSCA1-206ENST00000531405 RGS17Q9UGC6 210 aaPredicted RBP28.33■■■□□ 2.13
SSSCA1-206ENST00000531405 HDGFP51858 240 aaKnown RBP28.31■■■□□ 2.12
SSSCA1-206ENST00000531405 NUP155O75694 1391 aa28.29■■■□□ 2.12
SSSCA1-206ENST00000531405 SPHKAPQ2M3C7 1700 aa28.29■■■□□ 2.12
SSSCA1-206ENST00000531405 ADAMTS13Q76LX8 1427 aa28.28■■■□□ 2.12
SSSCA1-206ENST00000531405 DIP2AQ14689 1571 aa28.28■■■□□ 2.12
SSSCA1-206ENST00000531405 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.27■■■□□ 2.12
SSSCA1-206ENST00000531405 SLAIN2Q9P270 581 aa28.26■■■□□ 2.11
SSSCA1-206ENST00000531405 TBX22Q9Y458 520 aa28.26■■■□□ 2.11
SSSCA1-206ENST00000531405 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.26■■■□□ 2.11
SSSCA1-206ENST00000531405 COL16A1Q07092 1604 aaPredicted RBP28.21■■■□□ 2.11
SSSCA1-206ENST00000531405 TRPM2O94759 1503 aa28.2■■■□□ 2.1
SSSCA1-206ENST00000531405 NRXN3Q9Y4C0 1643 aa28.19■■■□□ 2.1
SSSCA1-206ENST00000531405 C14orf37Q86TY3 774 aa28.19■■■□□ 2.1
SSSCA1-206ENST00000531405 NCOA3Q9Y6Q9 1424 aa28.17■■■□□ 2.1
SSSCA1-206ENST00000531405 PIK3R4Q99570 1358 aa28.16■■■□□ 2.1
SSSCA1-206ENST00000531405 POTEAQ6S8J7 498 aa28.16■■■□□ 2.1
SSSCA1-206ENST00000531405 PTPRUQ92729 1446 aa28.16■■■□□ 2.1
SSSCA1-206ENST00000531405 XRN1Q8IZH2 1706 aaKnown RBP28.13■■■□□ 2.09
SSSCA1-206ENST00000531405 CLTCL1P53675 1640 aa28.13■■■□□ 2.09
SSSCA1-206ENST00000531405 JCADQ9P266 1359 aa28.12■■■□□ 2.09
SSSCA1-206ENST00000531405 SETBP1Q9Y6X0 1596 aa28.11■■■□□ 2.09
SSSCA1-206ENST00000531405 AMOTL2Q9Y2J4 779 aa28.11■■■□□ 2.09
SSSCA1-206ENST00000531405 KIF1BO60333 1816 aa28.11■■■□□ 2.09
SSSCA1-206ENST00000531405 SETD1AO15047 1707 aaKnown RBP28.1■■■□□ 2.09
SSSCA1-206ENST00000531405 C19orf44Q9H6X5 657 aa28.09■■■□□ 2.09
SSSCA1-206ENST00000531405 AHDC1Q5TGY3 1603 aaPredicted RBP28.09■■■□□ 2.09
SSSCA1-206ENST00000531405 ATF3P18847 181 aa28.08■■■□□ 2.09
SSSCA1-206ENST00000531405 CADPS2Q86UW7 1296 aa28.08■■■□□ 2.09
SSSCA1-206ENST00000531405 ZNF326Q5BKZ1 582 aaKnown RBP28.07■■■□□ 2.08
SSSCA1-206ENST00000531405 SHPRHQ149N8 1683 aa28.07■■■□□ 2.08
SSSCA1-206ENST00000531405 LRP6O75581 1613 aa28.05■■■□□ 2.08
SSSCA1-206ENST00000531405 NEXMIFQ5QGS0 1516 aa28.05■■■□□ 2.08
SSSCA1-206ENST00000531405 RRBP1Q9P2E9 1410 aaKnown RBP28.04■■■□□ 2.08
SSSCA1-206ENST00000531405 NAIPQ13075 1403 aa28.01■■■□□ 2.08
SSSCA1-206ENST00000531405 METP08581 1390 aa28.01■■■□□ 2.07
SSSCA1-206ENST00000531405 NALCNQ8IZF0 1738 aa28■■■□□ 2.07
SSSCA1-206ENST00000531405 BRINP3Q76B58 766 aa27.98■■■□□ 2.07
SSSCA1-206ENST00000531405 DCCP43146 1447 aa27.98■■■□□ 2.07
SSSCA1-206ENST00000531405 NHSL1Q5SYE7 1610 aa27.97■■■□□ 2.07
SSSCA1-206ENST00000531405 ASXL1Q8IXJ9 1541 aa27.97■■■□□ 2.07
SSSCA1-206ENST00000531405 SPATA31A6Q5VVP1 1343 aa27.96■■■□□ 2.07
SSSCA1-206ENST00000531405 MST1RQ04912 1400 aa27.94■■■□□ 2.06
SSSCA1-206ENST00000531405 MEX3CQ5U5Q3 659 aaKnown RBP27.93■■■□□ 2.06
SSSCA1-206ENST00000531405 ADGRL3Q9HAR2 1447 aa27.9■■■□□ 2.06
SSSCA1-206ENST00000531405 PPLO60437 1756 aa27.89■■■□□ 2.06
SSSCA1-206ENST00000531405 TRIM52Q96A61 297 aa27.88■■■□□ 2.05
SSSCA1-206ENST00000531405 HFM1A2PYH4 1435 aa27.86■■■□□ 2.05
SSSCA1-206ENST00000531405 NUTM2BA6NNL0 878 aaPredicted RBP27.86■■■□□ 2.05
SSSCA1-206ENST00000531405 NUTM2EB1AL46 878 aaPredicted RBP27.86■■■□□ 2.05
SSSCA1-206ENST00000531405 NUTM2AQ8IVF1 878 aaPredicted RBP27.86■■■□□ 2.05
SSSCA1-206ENST00000531405 SETD5Q9C0A6 1442 aa27.84■■■□□ 2.05
SSSCA1-206ENST00000531405 DDX17Q92841 729 aaKnown RBP27.83■■■□□ 2.05
SSSCA1-206ENST00000531405 ZNF772Q68DY9 489 aaPredicted RBP27.82■■■□□ 2.04
SSSCA1-206ENST00000531405 SLC4A1APQ9BWU0 796 aaKnown RBP27.8■■■□□ 2.04
SSSCA1-206ENST00000531405 PTCH1Q13635 1447 aa27.79■■■□□ 2.04
SSSCA1-206ENST00000531405 ROBO2Q9HCK4 1378 aa27.78■■■□□ 2.04
SSSCA1-206ENST00000531405 VGFO15240 615 aaPredicted RBP27.78■■■□□ 2.04
SSSCA1-206ENST00000531405 C1orf167Q5SNV9 1468 aa27.76■■■□□ 2.04
SSSCA1-206ENST00000531405 LAMC1P11047 1609 aa27.76■■■□□ 2.03
SSSCA1-206ENST00000531405 LRRC59Q96AG4 307 aaKnown RBP27.75■■■□□ 2.03
SSSCA1-206ENST00000531405 PNPLA6Q8IY17 1366 aa27.74■■■□□ 2.03
SSSCA1-206ENST00000531405 FOXD1Q16676 465 aa27.74■■■□□ 2.03
SSSCA1-206ENST00000531405 AFF2P51816 1311 aa27.73■■■□□ 2.03
SSSCA1-206ENST00000531405 RPGRIP1LQ68CZ1 1315 aa27.72■■■□□ 2.03
SSSCA1-206ENST00000531405 IFT172Q9UG01 1749 aa27.72■■■□□ 2.03
SSSCA1-206ENST00000531405 PRAG1Q86YV5 1406 aa27.7■■■□□ 2.03
SSSCA1-206ENST00000531405 RXRBP28702 533 aa27.7■■■□□ 2.02
SSSCA1-206ENST00000531405 C8orf37Q96NL8 207 aa27.68■■■□□ 2.02
SSSCA1-206ENST00000531405 ORAI2Q96SN7 254 aa27.68■■■□□ 2.02
SSSCA1-206ENST00000531405 UPF1Q92900 1129 aaKnown RBP eCLIP27.66■■■□□ 2.02
SSSCA1-206ENST00000531405 CDK12Q9NYV4 1490 aaPredicted RBP27.64■■■□□ 2.02
SSSCA1-206ENST00000531405 CCDC144AA2RUR9 1427 aa27.63■■■□□ 2.01
SSSCA1-206ENST00000531405 CDC42BPGQ6DT37 1551 aa27.63■■■□□ 2.01
SSSCA1-206ENST00000531405 ADGRF5Q8IZF2 1346 aa27.63■■■□□ 2.01
SSSCA1-206ENST00000531405 ADAMTS2O95450 1211 aa27.61■■■□□ 2.01
SSSCA1-206ENST00000531405 SOS2Q07890 1332 aaPredicted RBP27.61■■■□□ 2.01
SSSCA1-206ENST00000531405 SPATA31E1Q6ZUB1 1445 aa27.6■■■□□ 2.01
SSSCA1-206ENST00000531405 RGL3Q3MIN7 710 aa27.6■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms