RNA–Protein interactions for RNA: ENST00000529205.1

HIF3A-212, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-212ENST00000529205 NOS1P29475 1434 aa21.02■□□□□ 0.96
HIF3A-212ENST00000529205 ADGRB3O60242 1522 aa21.01■□□□□ 0.95
HIF3A-212ENST00000529205 PPP1R15AO75807 674 aaPredicted RBP21.01■□□□□ 0.95
HIF3A-212ENST00000529205 SLAIN2Q9P270 581 aa21.01■□□□□ 0.95
HIF3A-212ENST00000529205 NWD1Q149M9 1564 aa20.97■□□□□ 0.95
HIF3A-212ENST00000529205 JCADQ9P266 1359 aa20.97■□□□□ 0.95
HIF3A-212ENST00000529205 RPRD2Q5VT52 1461 aaKnown RBP20.96■□□□□ 0.95
HIF3A-212ENST00000529205 C14orf37Q86TY3 774 aa20.95■□□□□ 0.94
HIF3A-212ENST00000529205 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.95■□□□□ 0.94
HIF3A-212ENST00000529205 PLEKHG1Q9ULL1 1385 aa20.95■□□□□ 0.94
HIF3A-212ENST00000529205 FAM50AQ14320 339 aaKnown RBP20.94■□□□□ 0.94
HIF3A-212ENST00000529205 CHGAP10645 457 aaKnown RBP20.92■□□□□ 0.94
HIF3A-212ENST00000529205 TBX22Q9Y458 520 aa20.92■□□□□ 0.94
HIF3A-212ENST00000529205 ANKRD50Q9ULJ7 1429 aa20.92■□□□□ 0.94
HIF3A-212ENST00000529205 RIMS2Q9UQ26 1411 aa20.92■□□□□ 0.94
HIF3A-212ENST00000529205 ADGRL2O95490 1459 aa20.92■□□□□ 0.94
HIF3A-212ENST00000529205 PHLPP1O60346 1717 aa20.92■□□□□ 0.94
HIF3A-212ENST00000529205 NCOA3Q9Y6Q9 1424 aa20.91■□□□□ 0.94
HIF3A-212ENST00000529205 MEX3CQ5U5Q3 659 aaKnown RBP20.9■□□□□ 0.94
HIF3A-212ENST00000529205 ZFYVE9O95405 1425 aa20.89■□□□□ 0.94
HIF3A-212ENST00000529205 CADPS2Q86UW7 1296 aa20.89■□□□□ 0.93
HIF3A-212ENST00000529205 SPATA31A6Q5VVP1 1343 aa20.88■□□□□ 0.93
HIF3A-212ENST00000529205 ATF3P18847 181 aa20.88■□□□□ 0.93
HIF3A-212ENST00000529205 ZNF772Q68DY9 489 aaPredicted RBP20.87■□□□□ 0.93
HIF3A-212ENST00000529205 CHD2O14647 1828 aaKnown RBP20.86■□□□□ 0.93
HIF3A-212ENST00000529205 C19orf44Q9H6X5 657 aa20.86■□□□□ 0.93
HIF3A-212ENST00000529205 GCC2Q8IWJ2 1684 aa20.84■□□□□ 0.93
HIF3A-212ENST00000529205 PIK3R4Q99570 1358 aa20.84■□□□□ 0.93
HIF3A-212ENST00000529205 TMEM131LA2VDJ0 1609 aa20.83■□□□□ 0.93
HIF3A-212ENST00000529205 NUTM2DQ5VT03 806 aaPredicted RBP20.81■□□□□ 0.92
HIF3A-212ENST00000529205 COL16A1Q07092 1604 aaPredicted RBP20.8■□□□□ 0.92
HIF3A-212ENST00000529205 DIP2AQ14689 1571 aa20.8■□□□□ 0.92
HIF3A-212ENST00000529205 MYO5BQ9ULV0 1848 aa20.79■□□□□ 0.92
HIF3A-212ENST00000529205 AMOTL2Q9Y2J4 779 aa20.78■□□□□ 0.92
HIF3A-212ENST00000529205 ADAMTS13Q76LX8 1427 aa20.78■□□□□ 0.92
HIF3A-212ENST00000529205 TRIM52Q96A61 297 aa20.77■□□□□ 0.92
HIF3A-212ENST00000529205 SETD1AO15047 1707 aaKnown RBP20.76■□□□□ 0.91
HIF3A-212ENST00000529205 AHDC1Q5TGY3 1603 aaPredicted RBP20.75■□□□□ 0.91
HIF3A-212ENST00000529205 TRPM2O94759 1503 aa20.75■□□□□ 0.91
HIF3A-212ENST00000529205 RXRBP28702 533 aa20.75■□□□□ 0.91
HIF3A-212ENST00000529205 UNC13BO14795 1591 aa20.75■□□□□ 0.91
HIF3A-212ENST00000529205 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.75■□□□□ 0.91
HIF3A-212ENST00000529205 LRP6O75581 1613 aa20.75■□□□□ 0.91
HIF3A-212ENST00000529205 NUTM2BA6NNL0 878 aaPredicted RBP20.73■□□□□ 0.91
HIF3A-212ENST00000529205 NUTM2EB1AL46 878 aaPredicted RBP20.73■□□□□ 0.91
HIF3A-212ENST00000529205 BRINP3Q76B58 766 aa20.73■□□□□ 0.91
HIF3A-212ENST00000529205 NUTM2AQ8IVF1 878 aaPredicted RBP20.73■□□□□ 0.91
HIF3A-212ENST00000529205 UPF1Q92900 1129 aaKnown RBP eCLIP20.73■□□□□ 0.91
HIF3A-212ENST00000529205 NUP155O75694 1391 aa20.72■□□□□ 0.91
HIF3A-212ENST00000529205 ROCK1Q13464 1354 aa20.72■□□□□ 0.91
HIF3A-212ENST00000529205 E9PCH4 1651 aa20.71■□□□□ 0.91
HIF3A-212ENST00000529205 SHPRHQ149N8 1683 aa20.71■□□□□ 0.91
HIF3A-212ENST00000529205 DCCP43146 1447 aa20.7■□□□□ 0.9
HIF3A-212ENST00000529205 ZNF326Q5BKZ1 582 aaKnown RBP20.69■□□□□ 0.9
HIF3A-212ENST00000529205 LRRC59Q96AG4 307 aaKnown RBP20.69■□□□□ 0.9
HIF3A-212ENST00000529205 IQGAP3Q86VI3 1631 aa20.68■□□□□ 0.9
HIF3A-212ENST00000529205 PTPRUQ92729 1446 aa20.66■□□□□ 0.9
HIF3A-212ENST00000529205 AFF2P51816 1311 aa20.65■□□□□ 0.9
HIF3A-212ENST00000529205 CDK12Q9NYV4 1490 aaPredicted RBP20.64■□□□□ 0.89
HIF3A-212ENST00000529205 SETD5Q9C0A6 1442 aa20.64■□□□□ 0.89
HIF3A-212ENST00000529205 ITGAEP38570 1179 aa20.64■□□□□ 0.89
HIF3A-212ENST00000529205 ASXL1Q8IXJ9 1541 aa20.63■□□□□ 0.89
HIF3A-212ENST00000529205 MST1RQ04912 1400 aa20.61■□□□□ 0.89
HIF3A-212ENST00000529205 C8orf37Q96NL8 207 aa20.6■□□□□ 0.89
HIF3A-212ENST00000529205 SETBP1Q9Y6X0 1596 aa20.59■□□□□ 0.89
HIF3A-212ENST00000529205 RBM6P78332 1123 aaKnown RBP20.59■□□□□ 0.89
HIF3A-212ENST00000529205 QTRT2Q9H974 415 aaKnown RBP20.59■□□□□ 0.89
HIF3A-212ENST00000529205 XRN1Q8IZH2 1706 aaKnown RBP20.57■□□□□ 0.88
HIF3A-212ENST00000529205 METP08581 1390 aa20.57■□□□□ 0.88
HIF3A-212ENST00000529205 NGLY1Q96IV0 654 aa20.56■□□□□ 0.88
HIF3A-212ENST00000529205 ADGRL3Q9HAR2 1447 aa20.55■□□□□ 0.88
HIF3A-212ENST00000529205 NHSL1Q5SYE7 1610 aa20.55■□□□□ 0.88
HIF3A-212ENST00000529205 NRXN3Q9Y4C0 1643 aa20.55■□□□□ 0.88
HIF3A-212ENST00000529205 PNPLA6Q8IY17 1366 aa20.54■□□□□ 0.88
HIF3A-212ENST00000529205 SPHKAPQ2M3C7 1700 aa20.53■□□□□ 0.88
HIF3A-212ENST00000529205 DDX17Q92841 729 aaKnown RBP20.53■□□□□ 0.88
HIF3A-212ENST00000529205 FOXD1Q16676 465 aa20.52■□□□□ 0.88
HIF3A-212ENST00000529205 ADAMTS2O95450 1211 aa20.51■□□□□ 0.87
HIF3A-212ENST00000529205 VGFO15240 615 aaPredicted RBP20.5■□□□□ 0.87
HIF3A-212ENST00000529205 RGS12O14924 1447 aa20.49■□□□□ 0.87
HIF3A-212ENST00000529205 C1orf167Q5SNV9 1468 aa20.48■□□□□ 0.87
HIF3A-212ENST00000529205 USP21Q9UK80 565 aa20.47■□□□□ 0.87
HIF3A-212ENST00000529205 NEXMIFQ5QGS0 1516 aa20.47■□□□□ 0.87
HIF3A-212ENST00000529205 TRPC5Q9UL62 973 aaPredicted RBP20.46■□□□□ 0.87
HIF3A-212ENST00000529205 ATAD2Q6PL18 1390 aa20.46■□□□□ 0.87
HIF3A-212ENST00000529205 NALCNQ8IZF0 1738 aa20.45■□□□□ 0.86
HIF3A-212ENST00000529205 SOS2Q07890 1332 aaPredicted RBP20.45■□□□□ 0.86
HIF3A-212ENST00000529205 ORAI2Q96SN7 254 aa20.44■□□□□ 0.86
HIF3A-212ENST00000529205 PTCH1Q13635 1447 aa20.44■□□□□ 0.86
HIF3A-212ENST00000529205 CLTCL1P53675 1640 aa20.43■□□□□ 0.86
HIF3A-212ENST00000529205 KIF1BO60333 1816 aa20.42■□□□□ 0.86
HIF3A-212ENST00000529205 RPGRIP1LQ68CZ1 1315 aa20.42■□□□□ 0.86
HIF3A-212ENST00000529205 PPARGC1BQ86YN6 1023 aaKnown RBP20.41■□□□□ 0.86
HIF3A-212ENST00000529205 FNBP4Q8N3X1 1017 aaPredicted RBP20.4■□□□□ 0.86
HIF3A-212ENST00000529205 HFM1A2PYH4 1435 aa20.39■□□□□ 0.85
HIF3A-212ENST00000529205 ROBO2Q9HCK4 1378 aa20.39■□□□□ 0.85
HIF3A-212ENST00000529205 LAMC1P11047 1609 aa20.38■□□□□ 0.85
HIF3A-212ENST00000529205 NPHP3Q7Z494 1330 aa20.38■□□□□ 0.85
HIF3A-212ENST00000529205 ESCO1Q5FWF5 840 aa20.38■□□□□ 0.85
HIF3A-212ENST00000529205 ZRANB1Q9UGI0 708 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms