RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 DAXXQ9UER7 740 aaPredicted RBP10.48□□□□□ -0.73
CD44-230ENST00000528922 ZFRQ96KR1 1074 aaKnown RBP10.47□□□□□ -0.73
CD44-230ENST00000528922 MS4A1P11836 297 aa10.46□□□□□ -0.73
CD44-230ENST00000528922 SWT1Q5T5J6 900 aaKnown RBP10.46□□□□□ -0.73
CD44-230ENST00000528922 FAM217BQ9NTX9 383 aaPredicted RBP10.46□□□□□ -0.73
CD44-230ENST00000528922 SSTR3P32745 418 aaPredicted RBP10.45□□□□□ -0.74
CD44-230ENST00000528922 SAMD7Q7Z3H4 446 aa10.44□□□□□ -0.74
CD44-230ENST00000528922 STAC3Q96MF2 364 aa10.44□□□□□ -0.74
CD44-230ENST00000528922 FAM117AQ9C073 453 aa10.44□□□□□ -0.74
CD44-230ENST00000528922 DDX11L8A8MPP1 907 aa10.4□□□□□ -0.74
CD44-230ENST00000528922 HDGFP51858 240 aaKnown RBP10.4□□□□□ -0.74
CD44-230ENST00000528922 IL27Q8NEV9 243 aa10.4□□□□□ -0.74
CD44-230ENST00000528922 PLEKHG3A1L390 1219 aa10.39□□□□□ -0.75
CD44-230ENST00000528922 GOLGA8CPA6NN73 597 aa10.39□□□□□ -0.75
CD44-230ENST00000528922 SLC10A3P09131 477 aa10.39□□□□□ -0.75
CD44-230ENST00000528922 PCDH10Q9P2E7 1040 aa10.39□□□□□ -0.75
CD44-230ENST00000528922 CD46P15529 392 aa10.38□□□□□ -0.75
CD44-230ENST00000528922 SULF1Q8IWU6 871 aa10.37□□□□□ -0.75
CD44-230ENST00000528922 ANKK1Q8NFD2 765 aa10.37□□□□□ -0.75
CD44-230ENST00000528922 LRCH3Q96II8 777 aa10.37□□□□□ -0.75
CD44-230ENST00000528922 BEGAINQ9BUH8 593 aa10.37□□□□□ -0.75
CD44-230ENST00000528922 SLF2Q8IX21 1173 aa10.36□□□□□ -0.75
CD44-230ENST00000528922 WNT2BQ93097 391 aa10.36□□□□□ -0.75
CD44-230ENST00000528922 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.36□□□□□ -0.75
CD44-230ENST00000528922 SOWAHBA6NEL2 793 aa10.35□□□□□ -0.75
CD44-230ENST00000528922 BCAMP50895 628 aa10.35□□□□□ -0.75
CD44-230ENST00000528922 RDH13Q8NBN7 331 aa10.35□□□□□ -0.75
CD44-230ENST00000528922 DDRGK1Q96HY6 314 aa10.35□□□□□ -0.75
CD44-230ENST00000528922 RNF40O75150 1001 aa10.34□□□□□ -0.75
CD44-230ENST00000528922 KCTD12Q96CX2 325 aaKnown RBP10.33□□□□□ -0.76
CD44-230ENST00000528922 TMEM132AQ24JP5 1023 aa10.33□□□□□ -0.76
CD44-230ENST00000528922 GCGRP47871 477 aa10.32□□□□□ -0.76
CD44-230ENST00000528922 SLC4A3P48751 1232 aa10.32□□□□□ -0.76
CD44-230ENST00000528922 SPNS2Q8IVW8 549 aa10.32□□□□□ -0.76
CD44-230ENST00000528922 RSPH4AQ5TD94 716 aa10.31□□□□□ -0.76
CD44-230ENST00000528922 THSD4Q6ZMP0 1018 aa10.31□□□□□ -0.76
CD44-230ENST00000528922 MYT1LQ9UL68 1186 aa10.31□□□□□ -0.76
CD44-230ENST00000528922 HPS5Q9UPZ3 1129 aa10.31□□□□□ -0.76
CD44-230ENST00000528922 CFHP08603 1231 aa10.29□□□□□ -0.76
CD44-230ENST00000528922 PPP4CP60510 307 aa10.29□□□□□ -0.76
CD44-230ENST00000528922 SPIRE2Q8WWL2 714 aa10.29□□□□□ -0.76
CD44-230ENST00000528922 TBC1D2Q9BYX2 928 aa10.29□□□□□ -0.76
CD44-230ENST00000528922 TSR3Q9UJK0 312 aaKnown RBP10.29□□□□□ -0.76
CD44-230ENST00000528922 WBP1LQ9NX94 342 aa10.28□□□□□ -0.76
CD44-230ENST00000528922 KDM4AO75164 1064 aa10.27□□□□□ -0.77
CD44-230ENST00000528922 MYSM1Q5VVJ2 828 aa10.26□□□□□ -0.77
CD44-230ENST00000528922 NUTM1Q86Y26 1132 aa10.26□□□□□ -0.77
CD44-230ENST00000528922 APLP1P51693 650 aa10.25□□□□□ -0.77
CD44-230ENST00000528922 RSPH6AQ9H0K4 717 aa10.25□□□□□ -0.77
CD44-230ENST00000528922 FUT2Q10981 343 aa10.24□□□□□ -0.77
CD44-230ENST00000528922 SH3D19Q5HYK7 790 aa10.24□□□□□ -0.77
CD44-230ENST00000528922 NECTIN2Q92692 538 aa10.24□□□□□ -0.77
CD44-230ENST00000528922 POLR3EQ9NVU0 708 aa10.24□□□□□ -0.77
CD44-230ENST00000528922 MOXD2PA6NHM9 499 aa10.23□□□□□ -0.77
CD44-230ENST00000528922 PTPN5P54829 565 aa10.23□□□□□ -0.77
CD44-230ENST00000528922 KMT5BQ4FZB7 885 aa10.23□□□□□ -0.77
CD44-230ENST00000528922 GOPCQ9HD26 462 aa10.23□□□□□ -0.77
CD44-230ENST00000528922 ACTN4O43707 911 aaKnown RBP10.22□□□□□ -0.77
CD44-230ENST00000528922 NDUFV2P19404 249 aa10.22□□□□□ -0.77
CD44-230ENST00000528922 SKIV2LQ15477 1246 aaKnown RBP10.22□□□□□ -0.77
CD44-230ENST00000528922 DIXDC1Q155Q3 683 aa10.22□□□□□ -0.77
CD44-230ENST00000528922 HOXA2O43364 376 aa10.21□□□□□ -0.78
CD44-230ENST00000528922 USP46P62068 366 aa10.21□□□□□ -0.78
CD44-230ENST00000528922 PROCA1Q8NCQ7 364 aaPredicted RBP10.21□□□□□ -0.78
CD44-230ENST00000528922 HLA-CQ95604 372 aa10.21□□□□□ -0.78
CD44-230ENST00000528922 RNF166Q96A37 237 aaPredicted RBP10.21□□□□□ -0.78
CD44-230ENST00000528922 LIMD1Q9UGP4 676 aa10.2□□□□□ -0.78
CD44-230ENST00000528922 SPTLC1O15269 473 aa10.19□□□□□ -0.78
CD44-230ENST00000528922 ATP6V1AP38606 617 aa10.19□□□□□ -0.78
CD44-230ENST00000528922 PUS10Q3MIT2 529 aaKnown RBP10.19□□□□□ -0.78
CD44-230ENST00000528922 RSBN1LQ6PCB5 846 aaPredicted RBP10.19□□□□□ -0.78
CD44-230ENST00000528922 RIC3Q7Z5B4 369 aa10.19□□□□□ -0.78
CD44-230ENST00000528922 GUCA2AQ02747 115 aa10.18□□□□□ -0.78
CD44-230ENST00000528922 PRR14Q9BWN1 585 aa10.18□□□□□ -0.78
CD44-230ENST00000528922 CLK2P49760 499 aaKnown RBP10.17□□□□□ -0.78
CD44-230ENST00000528922 MMRN1Q13201 1228 aa10.17□□□□□ -0.78
CD44-230ENST00000528922 MORN1Q5T089 497 aa10.17□□□□□ -0.78
CD44-230ENST00000528922 PCDHGC3Q9UN70 934 aa10.17□□□□□ -0.78
CD44-230ENST00000528922 PCDHB15Q9Y5E8 787 aa10.17□□□□□ -0.78
CD44-230ENST00000528922 PCMTD1Q96MG8 357 aaPredicted RBP10.16□□□□□ -0.78
CD44-230ENST00000528922 FDX1P10109 184 aa10.15□□□□□ -0.78
CD44-230ENST00000528922 GJA5P36382 358 aa10.15□□□□□ -0.78
CD44-230ENST00000528922 GRIPAP1Q4V328 841 aa10.15□□□□□ -0.78
CD44-230ENST00000528922 NYAP1Q6ZVC0 841 aa10.15□□□□□ -0.78
CD44-230ENST00000528922 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.15□□□□□ -0.78
CD44-230ENST00000528922 PCDHB3Q9Y5E6 796 aa10.15□□□□□ -0.78
CD44-230ENST00000528922 FBXO31Q5XUX0 539 aaPredicted RBP10.14□□□□□ -0.79
CD44-230ENST00000528922 SLC27A5Q9Y2P5 690 aa10.14□□□□□ -0.79
CD44-230ENST00000528922 CSPP1Q1MSJ5 1256 aa10.13□□□□□ -0.79
CD44-230ENST00000528922 TUSC1Q2TAM9 212 aa10.13□□□□□ -0.79
CD44-230ENST00000528922 BLOC1S3Q6QNY0 202 aa10.13□□□□□ -0.79
CD44-230ENST00000528922 HCSTQ9UBK5 93 aa10.13□□□□□ -0.79
CD44-230ENST00000528922 QPCTQ16769 361 aa10.11□□□□□ -0.79
CD44-230ENST00000528922 SCUBE3Q8IX30 993 aa10.11□□□□□ -0.79
CD44-230ENST00000528922 ATP1B4Q9UN42 357 aaPredicted RBP10.11□□□□□ -0.79
CD44-230ENST00000528922 COPS2P61201 443 aa10.1□□□□□ -0.79
CD44-230ENST00000528922 SYMPKQ92797 1274 aaKnown RBP10.1□□□□□ -0.79
CD44-230ENST00000528922 LILRB3O75022 631 aa10.09□□□□□ -0.79
CD44-230ENST00000528922 TJAP1Q5JTD0 557 aa10.09□□□□□ -0.79
CD44-230ENST00000528922 CABLES1Q8TDN4 633 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms