RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 GPCPD1Q9NPB8 672 aa12.86□□□□□ -0.35
PCF11-202ENST00000528336 SAMD7Q7Z3H4 446 aa12.85□□□□□ -0.35
PCF11-202ENST00000528336 PCDH10Q9P2E7 1040 aa12.85□□□□□ -0.35
PCF11-202ENST00000528336 GIGYF2Q6Y7W6 1299 aaKnown RBP12.84□□□□□ -0.35
PCF11-202ENST00000528336 DAXXQ9UER7 740 aaPredicted RBP12.84□□□□□ -0.35
PCF11-202ENST00000528336 KDM4CQ9H3R0 1056 aa12.83□□□□□ -0.36
PCF11-202ENST00000528336 TMUB1Q9BVT8 246 aa12.82□□□□□ -0.36
PCF11-202ENST00000528336 RNF40O75150 1001 aa12.81□□□□□ -0.36
PCF11-202ENST00000528336 DDX11L8A8MPP1 907 aa12.8□□□□□ -0.36
PCF11-202ENST00000528336 ANKK1Q8NFD2 765 aa12.8□□□□□ -0.36
PCF11-202ENST00000528336 WNT2BQ93097 391 aa12.8□□□□□ -0.36
PCF11-202ENST00000528336 SSTR3P32745 418 aaPredicted RBP12.79□□□□□ -0.36
PCF11-202ENST00000528336 LRCH3Q96II8 777 aa12.79□□□□□ -0.36
PCF11-202ENST00000528336 FAM217BQ9NTX9 383 aaPredicted RBP12.78□□□□□ -0.36
PCF11-202ENST00000528336 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.78□□□□□ -0.36
PCF11-202ENST00000528336 SLC4A3P48751 1232 aa12.77□□□□□ -0.37
PCF11-202ENST00000528336 KCTD12Q96CX2 325 aaKnown RBP12.77□□□□□ -0.37
PCF11-202ENST00000528336 MS4A1P11836 297 aa12.76□□□□□ -0.37
PCF11-202ENST00000528336 BCAMP50895 628 aa12.76□□□□□ -0.37
PCF11-202ENST00000528336 SLF2Q8IX21 1173 aa12.76□□□□□ -0.37
PCF11-202ENST00000528336 RDH13Q8NBN7 331 aa12.76□□□□□ -0.37
PCF11-202ENST00000528336 SULF1Q8IWU6 871 aa12.75□□□□□ -0.37
PCF11-202ENST00000528336 MYT1LQ9UL68 1186 aa12.75□□□□□ -0.37
PCF11-202ENST00000528336 SPNS2Q8IVW8 549 aa12.74□□□□□ -0.37
PCF11-202ENST00000528336 SOWAHBA6NEL2 793 aa12.73□□□□□ -0.37
PCF11-202ENST00000528336 FAM117AQ9C073 453 aa12.73□□□□□ -0.37
PCF11-202ENST00000528336 SLC10A3P09131 477 aa12.72□□□□□ -0.37
PCF11-202ENST00000528336 RSPH4AQ5TD94 716 aa12.72□□□□□ -0.37
PCF11-202ENST00000528336 IL27Q8NEV9 243 aa12.72□□□□□ -0.37
PCF11-202ENST00000528336 BEGAINQ9BUH8 593 aa12.71□□□□□ -0.37
PCF11-202ENST00000528336 HPS5Q9UPZ3 1129 aa12.71□□□□□ -0.37
PCF11-202ENST00000528336 CD46P15529 392 aa12.69□□□□□ -0.38
PCF11-202ENST00000528336 PPP4CP60510 307 aa12.69□□□□□ -0.38
PCF11-202ENST00000528336 THSD4Q6ZMP0 1018 aa12.69□□□□□ -0.38
PCF11-202ENST00000528336 PTPN5P54829 565 aa12.67□□□□□ -0.38
PCF11-202ENST00000528336 TSR3Q9UJK0 312 aaKnown RBP12.67□□□□□ -0.38
PCF11-202ENST00000528336 CFHP08603 1231 aa12.65□□□□□ -0.38
PCF11-202ENST00000528336 DDRGK1Q96HY6 314 aa12.65□□□□□ -0.38
PCF11-202ENST00000528336 WBP1LQ9NX94 342 aa12.65□□□□□ -0.38
PCF11-202ENST00000528336 PLEKHG3A1L390 1219 aa12.64□□□□□ -0.39
PCF11-202ENST00000528336 GCGRP47871 477 aa12.64□□□□□ -0.39
PCF11-202ENST00000528336 NUTM1Q86Y26 1132 aa12.63□□□□□ -0.39
PCF11-202ENST00000528336 NECTIN2Q92692 538 aa12.63□□□□□ -0.39
PCF11-202ENST00000528336 RNF166Q96A37 237 aaPredicted RBP12.63□□□□□ -0.39
PCF11-202ENST00000528336 KMT5BQ4FZB7 885 aa12.6□□□□□ -0.39
PCF11-202ENST00000528336 SPIRE2Q8WWL2 714 aa12.6□□□□□ -0.39
PCF11-202ENST00000528336 KDM4AO75164 1064 aa12.59□□□□□ -0.39
PCF11-202ENST00000528336 APLP1P51693 650 aa12.59□□□□□ -0.39
PCF11-202ENST00000528336 TBC1D2Q9BYX2 928 aa12.59□□□□□ -0.39
PCF11-202ENST00000528336 MMRN1Q13201 1228 aa12.57□□□□□ -0.4
PCF11-202ENST00000528336 FUT2Q10981 343 aa12.56□□□□□ -0.4
PCF11-202ENST00000528336 ACTN4O43707 911 aaKnown RBP12.55□□□□□ -0.4
PCF11-202ENST00000528336 PRR14Q9BWN1 585 aa12.55□□□□□ -0.4
PCF11-202ENST00000528336 RSPH6AQ9H0K4 717 aa12.55□□□□□ -0.4
PCF11-202ENST00000528336 POLR3EQ9NVU0 708 aa12.54□□□□□ -0.4
PCF11-202ENST00000528336 ATP1B4Q9UN42 357 aaPredicted RBP12.54□□□□□ -0.4
PCF11-202ENST00000528336 DIXDC1Q155Q3 683 aa12.53□□□□□ -0.4
PCF11-202ENST00000528336 TMEM132AQ24JP5 1023 aa12.53□□□□□ -0.4
PCF11-202ENST00000528336 PUS10Q3MIT2 529 aaKnown RBP12.53□□□□□ -0.4
PCF11-202ENST00000528336 HCSTQ9UBK5 93 aa12.53□□□□□ -0.4
PCF11-202ENST00000528336 MOXD2PA6NHM9 499 aa12.52□□□□□ -0.41
PCF11-202ENST00000528336 NDUFV2P19404 249 aa12.52□□□□□ -0.41
PCF11-202ENST00000528336 USP46P62068 366 aa12.52□□□□□ -0.41
PCF11-202ENST00000528336 MYSM1Q5VVJ2 828 aa12.52□□□□□ -0.41
PCF11-202ENST00000528336 ATP6V1AP38606 617 aa12.51□□□□□ -0.41
PCF11-202ENST00000528336 HLA-CQ95604 372 aa12.51□□□□□ -0.41
PCF11-202ENST00000528336 PCDHB3Q9Y5E6 796 aa12.51□□□□□ -0.41
PCF11-202ENST00000528336 HOXA2O43364 376 aa12.5□□□□□ -0.41
PCF11-202ENST00000528336 GRIPAP1Q4V328 841 aa12.5□□□□□ -0.41
PCF11-202ENST00000528336 NYAP1Q6ZVC0 841 aa12.5□□□□□ -0.41
PCF11-202ENST00000528336 GUCA2AQ02747 115 aa12.49□□□□□ -0.41
PCF11-202ENST00000528336 SH3D19Q5HYK7 790 aa12.49□□□□□ -0.41
PCF11-202ENST00000528336 RIC3Q7Z5B4 369 aa12.49□□□□□ -0.41
PCF11-202ENST00000528336 SKIV2LQ15477 1246 aaKnown RBP12.48□□□□□ -0.41
PCF11-202ENST00000528336 COPS2P61201 443 aa12.47□□□□□ -0.41
PCF11-202ENST00000528336 BLOC1S3Q6QNY0 202 aa12.47□□□□□ -0.41
PCF11-202ENST00000528336 PROCA1Q8NCQ7 364 aaPredicted RBP12.47□□□□□ -0.41
PCF11-202ENST00000528336 FDX1P10109 184 aa12.46□□□□□ -0.41
PCF11-202ENST00000528336 CLK2P49760 499 aaKnown RBP12.46□□□□□ -0.41
PCF11-202ENST00000528336 CSPP1Q1MSJ5 1256 aa12.46□□□□□ -0.41
PCF11-202ENST00000528336 MORN1Q5T089 497 aa12.46□□□□□ -0.41
PCF11-202ENST00000528336 RSBN1LQ6PCB5 846 aaPredicted RBP12.46□□□□□ -0.41
PCF11-202ENST00000528336 PCMTD1Q96MG8 357 aaPredicted RBP12.46□□□□□ -0.41
PCF11-202ENST00000528336 LIMD1Q9UGP4 676 aa12.46□□□□□ -0.41
PCF11-202ENST00000528336 SPTLC1O15269 473 aa12.45□□□□□ -0.42
PCF11-202ENST00000528336 SLC27A5Q9Y2P5 690 aa12.45□□□□□ -0.42
PCF11-202ENST00000528336 PCDHB15Q9Y5E8 787 aa12.44□□□□□ -0.42
PCF11-202ENST00000528336 MTRQ99707 1265 aa12.43□□□□□ -0.42
PCF11-202ENST00000528336 GOPCQ9HD26 462 aa12.43□□□□□ -0.42
PCF11-202ENST00000528336 NR1I2O75469 434 aa12.42□□□□□ -0.42
PCF11-202ENST00000528336 SCUBE3Q8IX30 993 aa12.42□□□□□ -0.42
PCF11-202ENST00000528336 PCDHGC3Q9UN70 934 aa12.42□□□□□ -0.42
PCF11-202ENST00000528336 GJA5P36382 358 aa12.39□□□□□ -0.43
PCF11-202ENST00000528336 TJAP1Q5JTD0 557 aa12.39□□□□□ -0.43
PCF11-202ENST00000528336 SYMPKQ92797 1274 aaKnown RBP12.39□□□□□ -0.43
PCF11-202ENST00000528336 C6orf229H3BNL8 230 aa12.38□□□□□ -0.43
PCF11-202ENST00000528336 CABLES1Q8TDN4 633 aa12.38□□□□□ -0.43
PCF11-202ENST00000528336 ZNF516Q92618 1163 aa12.38□□□□□ -0.43
PCF11-202ENST00000528336 NUTM2BA6NNL0 878 aaPredicted RBP12.37□□□□□ -0.43
PCF11-202ENST00000528336 NUTM2EB1AL46 878 aaPredicted RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms