RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 RBM33Q96EV2 1170 aaKnown RBP36.53■■■■□ 3.44
CPSF1-202ENST00000527827 ZFYVE9O95405 1425 aa36.52■■■■□ 3.44
CPSF1-202ENST00000527827 NKTRP30414 1462 aaKnown RBP36.52■■■■□ 3.44
CPSF1-202ENST00000527827 GCC2Q8IWJ2 1684 aa36.51■■■■□ 3.44
CPSF1-202ENST00000527827 UNC13BO14795 1591 aa36.5■■■■□ 3.43
CPSF1-202ENST00000527827 TMEM131LA2VDJ0 1609 aa36.48■■■■□ 3.43
CPSF1-202ENST00000527827 ROBO1Q9Y6N7 1651 aa36.48■■■■□ 3.43
CPSF1-202ENST00000527827 BCANQ96GW7 911 aa36.47■■■■□ 3.43
CPSF1-202ENST00000527827 PLEKHG1Q9ULL1 1385 aa36.46■■■■□ 3.43
CPSF1-202ENST00000527827 RGS17Q9UGC6 210 aaPredicted RBP36.46■■■■□ 3.43
CPSF1-202ENST00000527827 RIMS2Q9UQ26 1411 aa36.45■■■■□ 3.43
CPSF1-202ENST00000527827 CHD2O14647 1828 aaKnown RBP36.45■■■■□ 3.43
CPSF1-202ENST00000527827 E9PCH4 1651 aa36.42■■■■□ 3.42
CPSF1-202ENST00000527827 MSH6P52701 1360 aa36.38■■■■□ 3.41
CPSF1-202ENST00000527827 ROCK1Q13464 1354 aa36.38■■■■□ 3.41
CPSF1-202ENST00000527827 PPP1R15AO75807 674 aaPredicted RBP36.37■■■■□ 3.41
CPSF1-202ENST00000527827 HDGFP51858 240 aaKnown RBP36.37■■■■□ 3.41
CPSF1-202ENST00000527827 IQGAP3Q86VI3 1631 aa36.35■■■■□ 3.41
CPSF1-202ENST00000527827 TBX22Q9Y458 520 aa36.33■■■■□ 3.41
CPSF1-202ENST00000527827 CHGAP10645 457 aaKnown RBP36.32■■■■□ 3.4
CPSF1-202ENST00000527827 SLAIN2Q9P270 581 aa36.31■■■■□ 3.4
CPSF1-202ENST00000527827 ABCF1Q8NE71 845 aaKnown RBP eCLIP36.3■■■■□ 3.4
CPSF1-202ENST00000527827 ADAMTS13Q76LX8 1427 aa36.29■■■■□ 3.4
CPSF1-202ENST00000527827 PHLPP1O60346 1717 aa36.26■■■■□ 3.4
CPSF1-202ENST00000527827 NUTM2DQ5VT03 806 aaPredicted RBP36.26■■■■□ 3.4
CPSF1-202ENST00000527827 DIP2AQ14689 1571 aa36.24■■■■□ 3.39
CPSF1-202ENST00000527827 NUP155O75694 1391 aa36.24■■■■□ 3.39
CPSF1-202ENST00000527827 NCOA3Q9Y6Q9 1424 aa36.23■■■■□ 3.39
CPSF1-202ENST00000527827 POTEAQ6S8J7 498 aa36.22■■■■□ 3.39
CPSF1-202ENST00000527827 PIK3R4Q99570 1358 aa36.18■■■■□ 3.38
CPSF1-202ENST00000527827 ITGAEP38570 1179 aa36.18■■■■□ 3.38
CPSF1-202ENST00000527827 COL16A1Q07092 1604 aaPredicted RBP36.16■■■■□ 3.38
CPSF1-202ENST00000527827 SIPA1L2Q9P2F8 1722 aaPredicted RBP36.16■■■■□ 3.38
CPSF1-202ENST00000527827 JCADQ9P266 1359 aa36.15■■■■□ 3.38
CPSF1-202ENST00000527827 TRPM2O94759 1503 aa36.13■■■■□ 3.37
CPSF1-202ENST00000527827 C14orf37Q86TY3 774 aa36.12■■■■□ 3.37
CPSF1-202ENST00000527827 PTPRUQ92729 1446 aa36.11■■■■□ 3.37
CPSF1-202ENST00000527827 PPARGC1BQ86YN6 1023 aaKnown RBP36.1■■■■□ 3.37
CPSF1-202ENST00000527827 SPHKAPQ2M3C7 1700 aa36.09■■■■□ 3.37
CPSF1-202ENST00000527827 C19orf44Q9H6X5 657 aa36.09■■■■□ 3.37
CPSF1-202ENST00000527827 CADPS2Q86UW7 1296 aa36.08■■■■□ 3.37
CPSF1-202ENST00000527827 AMOTL2Q9Y2J4 779 aa36.07■■■■□ 3.36
CPSF1-202ENST00000527827 NRXN3Q9Y4C0 1643 aa36.07■■■■□ 3.36
CPSF1-202ENST00000527827 AHDC1Q5TGY3 1603 aaPredicted RBP36.05■■■■□ 3.36
CPSF1-202ENST00000527827 ATF3P18847 181 aa36.04■■■■□ 3.36
CPSF1-202ENST00000527827 XRN1Q8IZH2 1706 aaKnown RBP36.02■■■■□ 3.36
CPSF1-202ENST00000527827 SETBP1Q9Y6X0 1596 aa36.02■■■■□ 3.36
CPSF1-202ENST00000527827 LRP6O75581 1613 aa36■■■■□ 3.35
CPSF1-202ENST00000527827 SPATA31A6Q5VVP1 1343 aa35.97■■■■□ 3.35
CPSF1-202ENST00000527827 SHPRHQ149N8 1683 aa35.96■■■■□ 3.35
CPSF1-202ENST00000527827 SETD1AO15047 1707 aaKnown RBP35.94■■■■□ 3.34
CPSF1-202ENST00000527827 DCCP43146 1447 aa35.94■■■■□ 3.34
CPSF1-202ENST00000527827 ZNF326Q5BKZ1 582 aaKnown RBP35.93■■■■□ 3.34
CPSF1-202ENST00000527827 BRINP3Q76B58 766 aa35.93■■■■□ 3.34
CPSF1-202ENST00000527827 CLTCL1P53675 1640 aa35.93■■■■□ 3.34
CPSF1-202ENST00000527827 METP08581 1390 aa35.91■■■■□ 3.34
CPSF1-202ENST00000527827 NEXMIFQ5QGS0 1516 aa35.89■■■■□ 3.34
CPSF1-202ENST00000527827 MST1RQ04912 1400 aa35.86■■■■□ 3.33
CPSF1-202ENST00000527827 RRBP1Q9P2E9 1410 aaKnown RBP35.86■■■■□ 3.33
CPSF1-202ENST00000527827 ASXL1Q8IXJ9 1541 aa35.86■■■■□ 3.33
CPSF1-202ENST00000527827 MEX3CQ5U5Q3 659 aaKnown RBP35.85■■■■□ 3.33
CPSF1-202ENST00000527827 NAIPQ13075 1403 aa35.84■■■■□ 3.33
CPSF1-202ENST00000527827 KIF1BO60333 1816 aa35.83■■■■□ 3.33
CPSF1-202ENST00000527827 NHSL1Q5SYE7 1610 aa35.81■■■■□ 3.32
CPSF1-202ENST00000527827 ZNF772Q68DY9 489 aaPredicted RBP35.79■■■■□ 3.32
CPSF1-202ENST00000527827 ADGRL3Q9HAR2 1447 aa35.79■■■■□ 3.32
CPSF1-202ENST00000527827 NALCNQ8IZF0 1738 aa35.78■■■■□ 3.32
CPSF1-202ENST00000527827 SETD5Q9C0A6 1442 aa35.77■■■■□ 3.32
CPSF1-202ENST00000527827 NUTM2BA6NNL0 878 aaPredicted RBP35.73■■■■□ 3.31
CPSF1-202ENST00000527827 NUTM2EB1AL46 878 aaPredicted RBP35.73■■■■□ 3.31
CPSF1-202ENST00000527827 NUTM2AQ8IVF1 878 aaPredicted RBP35.73■■■■□ 3.31
CPSF1-202ENST00000527827 DDX17Q92841 729 aaKnown RBP35.68■■■■□ 3.3
CPSF1-202ENST00000527827 TRIM52Q96A61 297 aa35.68■■■■□ 3.3
CPSF1-202ENST00000527827 LRRC59Q96AG4 307 aaKnown RBP35.67■■■■□ 3.3
CPSF1-202ENST00000527827 HFM1A2PYH4 1435 aa35.66■■■■□ 3.3
CPSF1-202ENST00000527827 PTCH1Q13635 1447 aa35.65■■■■□ 3.3
CPSF1-202ENST00000527827 VGFO15240 615 aaPredicted RBP35.64■■■■□ 3.3
CPSF1-202ENST00000527827 PNPLA6Q8IY17 1366 aa35.63■■■■□ 3.29
CPSF1-202ENST00000527827 AFF2P51816 1311 aa35.62■■■■□ 3.29
CPSF1-202ENST00000527827 C1orf167Q5SNV9 1468 aa35.62■■■■□ 3.29
CPSF1-202ENST00000527827 RXRBP28702 533 aa35.62■■■■□ 3.29
CPSF1-202ENST00000527827 ROBO2Q9HCK4 1378 aa35.62■■■■□ 3.29
CPSF1-202ENST00000527827 UPF1Q92900 1129 aaKnown RBP eCLIP35.6■■■■□ 3.29
CPSF1-202ENST00000527827 PPLO60437 1756 aa35.6■■■■□ 3.29
CPSF1-202ENST00000527827 RPGRIP1LQ68CZ1 1315 aa35.59■■■■□ 3.29
CPSF1-202ENST00000527827 PRAG1Q86YV5 1406 aa35.59■■■■□ 3.29
CPSF1-202ENST00000527827 LAMC1P11047 1609 aa35.58■■■■□ 3.29
CPSF1-202ENST00000527827 SLC4A1APQ9BWU0 796 aaKnown RBP35.58■■■■□ 3.29
CPSF1-202ENST00000527827 CDK12Q9NYV4 1490 aaPredicted RBP35.57■■■■□ 3.28
CPSF1-202ENST00000527827 C8orf37Q96NL8 207 aa35.52■■■■□ 3.28
CPSF1-202ENST00000527827 ORAI2Q96SN7 254 aa35.52■■■■□ 3.28
CPSF1-202ENST00000527827 SOS2Q07890 1332 aaPredicted RBP35.49■■■■□ 3.27
CPSF1-202ENST00000527827 FOXD1Q16676 465 aa35.46■■■■□ 3.27
CPSF1-202ENST00000527827 QTRT2Q9H974 415 aaKnown RBP35.45■■■■□ 3.27
CPSF1-202ENST00000527827 RGS12O14924 1447 aa35.42■■■■□ 3.26
CPSF1-202ENST00000527827 ADAMTS2O95450 1211 aa35.42■■■■□ 3.26
CPSF1-202ENST00000527827 RBM6P78332 1123 aaKnown RBP35.41■■■■□ 3.26
CPSF1-202ENST00000527827 ADGRF5Q8IZF2 1346 aa35.39■■■■□ 3.26
CPSF1-202ENST00000527827 NGLY1Q96IV0 654 aa35.39■■■■□ 3.26
CPSF1-202ENST00000527827 CDC42BPGQ6DT37 1551 aa35.38■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms