RNA–Protein interactions for RNA: ENST00000525854.5

HIF3A-209, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-209ENST00000525854 ZFYVE9O95405 1425 aa17.58■□□□□ 0.41
HIF3A-209ENST00000525854 RIMS2Q9UQ26 1411 aa17.58■□□□□ 0.41
HIF3A-209ENST00000525854 DISP3Q9P2K9 1392 aa17.58■□□□□ 0.4
HIF3A-209ENST00000525854 PLEKHG1Q9ULL1 1385 aa17.57■□□□□ 0.4
HIF3A-209ENST00000525854 TMEM131LA2VDJ0 1609 aa17.57■□□□□ 0.4
HIF3A-209ENST00000525854 NAIPQ13075 1403 aa17.56■□□□□ 0.4
HIF3A-209ENST00000525854 HSPA1LP34931 641 aa17.55■□□□□ 0.4
HIF3A-209ENST00000525854 HFM1A2PYH4 1435 aa17.53■□□□□ 0.4
HIF3A-209ENST00000525854 PROSER2Q86WR7 435 aaPredicted RBP17.52■□□□□ 0.4
HIF3A-209ENST00000525854 TMEM94Q12767 1356 aa17.52■□□□□ 0.39
HIF3A-209ENST00000525854 ALKQ9UM73 1620 aa17.51■□□□□ 0.39
HIF3A-209ENST00000525854 TBX22Q9Y458 520 aa17.51■□□□□ 0.39
HIF3A-209ENST00000525854 NKTRP30414 1462 aaKnown RBP17.5■□□□□ 0.39
HIF3A-209ENST00000525854 TRIM52Q96A61 297 aa17.5■□□□□ 0.39
HIF3A-209ENST00000525854 SENP3Q9H4L4 574 aaPredicted RBP17.5■□□□□ 0.39
HIF3A-209ENST00000525854 MYO5BQ9ULV0 1848 aa17.49■□□□□ 0.39
HIF3A-209ENST00000525854 NUTM2DQ5VT03 806 aaPredicted RBP17.49■□□□□ 0.39
HIF3A-209ENST00000525854 NWD1Q149M9 1564 aa17.48■□□□□ 0.39
HIF3A-209ENST00000525854 PIK3R4Q99570 1358 aa17.46■□□□□ 0.39
HIF3A-209ENST00000525854 ZNF326Q5BKZ1 582 aaKnown RBP17.46■□□□□ 0.39
HIF3A-209ENST00000525854 SPHKAPQ2M3C7 1700 aa17.46■□□□□ 0.39
HIF3A-209ENST00000525854 SLC4A1APQ9BWU0 796 aaKnown RBP17.45■□□□□ 0.38
HIF3A-209ENST00000525854 ADAMTS13Q76LX8 1427 aa17.45■□□□□ 0.38
HIF3A-209ENST00000525854 DIP2AQ14689 1571 aa17.45■□□□□ 0.38
HIF3A-209ENST00000525854 MSH6P52701 1360 aa17.44■□□□□ 0.38
HIF3A-209ENST00000525854 RBM33Q96EV2 1170 aaKnown RBP17.44■□□□□ 0.38
HIF3A-209ENST00000525854 TRPM2O94759 1503 aa17.43■□□□□ 0.38
HIF3A-209ENST00000525854 XIRP1Q702N8 1843 aaKnown RBP17.43■□□□□ 0.38
HIF3A-209ENST00000525854 FAM135BQ49AJ0 1406 aa17.43■□□□□ 0.38
HIF3A-209ENST00000525854 NCOA3Q9Y6Q9 1424 aa17.41■□□□□ 0.38
HIF3A-209ENST00000525854 CHD2O14647 1828 aaKnown RBP17.4■□□□□ 0.38
HIF3A-209ENST00000525854 ILDR2Q71H61 639 aa17.4■□□□□ 0.38
HIF3A-209ENST00000525854 C14orf37Q86TY3 774 aa17.39■□□□□ 0.37
HIF3A-209ENST00000525854 ACIN1Q9UKV3 1341 aaKnown RBP17.39■□□□□ 0.37
HIF3A-209ENST00000525854 CLTCL1P53675 1640 aa17.39■□□□□ 0.37
HIF3A-209ENST00000525854 AMOTL2Q9Y2J4 779 aa17.38■□□□□ 0.37
HIF3A-209ENST00000525854 SETBP1Q9Y6X0 1596 aa17.37■□□□□ 0.37
HIF3A-209ENST00000525854 SLAIN2Q9P270 581 aa17.37■□□□□ 0.37
HIF3A-209ENST00000525854 MED1Q15648 1581 aaPredicted RBP17.36■□□□□ 0.37
HIF3A-209ENST00000525854 VGFO15240 615 aaPredicted RBP17.35■□□□□ 0.37
HIF3A-209ENST00000525854 C19orf44Q9H6X5 657 aa17.35■□□□□ 0.37
HIF3A-209ENST00000525854 RPGRIP1LQ68CZ1 1315 aa17.35■□□□□ 0.37
HIF3A-209ENST00000525854 NEXMIFQ5QGS0 1516 aa17.34■□□□□ 0.37
HIF3A-209ENST00000525854 CADPS2Q86UW7 1296 aa17.34■□□□□ 0.37
HIF3A-209ENST00000525854 PTPRUQ92729 1446 aa17.33■□□□□ 0.36
HIF3A-209ENST00000525854 ATF3P18847 181 aa17.33■□□□□ 0.36
HIF3A-209ENST00000525854 MPHOSPH9Q99550 1183 aa17.33■□□□□ 0.36
HIF3A-209ENST00000525854 PHF23Q9BUL5 403 aaPredicted RBP17.33■□□□□ 0.36
HIF3A-209ENST00000525854 KIF1BO60333 1816 aa17.33■□□□□ 0.36
HIF3A-209ENST00000525854 SOCS7O14512 581 aa17.32■□□□□ 0.36
HIF3A-209ENST00000525854 NRXN3Q9Y4C0 1643 aa17.32■□□□□ 0.36
HIF3A-209ENST00000525854 METP08581 1390 aa17.31■□□□□ 0.36
HIF3A-209ENST00000525854 FOXD1Q16676 465 aa17.31■□□□□ 0.36
HIF3A-209ENST00000525854 ROBO1Q9Y6N7 1651 aa17.31■□□□□ 0.36
HIF3A-209ENST00000525854 CCDC144AA2RUR9 1427 aa17.3■□□□□ 0.36
HIF3A-209ENST00000525854 SETD5Q9C0A6 1442 aa17.29■□□□□ 0.36
HIF3A-209ENST00000525854 XRN1Q8IZH2 1706 aaKnown RBP17.27■□□□□ 0.36
HIF3A-209ENST00000525854 DCCP43146 1447 aa17.27■□□□□ 0.35
HIF3A-209ENST00000525854 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.24■□□□□ 0.35
HIF3A-209ENST00000525854 JCADQ9P266 1359 aa17.23■□□□□ 0.35
HIF3A-209ENST00000525854 RGL3Q3MIN7 710 aa17.22■□□□□ 0.35
HIF3A-209ENST00000525854 ANKRD30BQ9BXX2 1392 aa17.22■□□□□ 0.35
HIF3A-209ENST00000525854 PTCH1Q13635 1447 aa17.21■□□□□ 0.35
HIF3A-209ENST00000525854 SPATA31E1Q6ZUB1 1445 aa17.21■□□□□ 0.35
HIF3A-209ENST00000525854 ADGRL3Q9HAR2 1447 aa17.21■□□□□ 0.35
HIF3A-209ENST00000525854 RAB3GAP2Q9H2M9 1393 aa17.21■□□□□ 0.35
HIF3A-209ENST00000525854 PHLPP1O60346 1717 aa17.21■□□□□ 0.35
HIF3A-209ENST00000525854 BRINP3Q76B58 766 aa17.2■□□□□ 0.34
HIF3A-209ENST00000525854 PPLO60437 1756 aa17.2■□□□□ 0.34
HIF3A-209ENST00000525854 PRAG1Q86YV5 1406 aa17.19■□□□□ 0.34
HIF3A-209ENST00000525854 ADGRF5Q8IZF2 1346 aa17.19■□□□□ 0.34
HIF3A-209ENST00000525854 MST1RQ04912 1400 aa17.18■□□□□ 0.34
HIF3A-209ENST00000525854 ROBO2Q9HCK4 1378 aa17.17■□□□□ 0.34
HIF3A-209ENST00000525854 AHDC1Q5TGY3 1603 aaPredicted RBP17.17■□□□□ 0.34
HIF3A-209ENST00000525854 COL16A1Q07092 1604 aaPredicted RBP17.16■□□□□ 0.34
HIF3A-209ENST00000525854 SPATA31A6Q5VVP1 1343 aa17.16■□□□□ 0.34
HIF3A-209ENST00000525854 SETD1AO15047 1707 aaKnown RBP17.16■□□□□ 0.34
HIF3A-209ENST00000525854 HRCP23327 699 aa17.15■□□□□ 0.34
HIF3A-209ENST00000525854 ASXL1Q8IXJ9 1541 aa17.15■□□□□ 0.34
HIF3A-209ENST00000525854 RGS17Q9UGC6 210 aaPredicted RBP17.14■□□□□ 0.33
HIF3A-209ENST00000525854 PIK3C2GO75747 1445 aa17.12■□□□□ 0.33
HIF3A-209ENST00000525854 NALCNQ8IZF0 1738 aa17.11■□□□□ 0.33
HIF3A-209ENST00000525854 STK26Q9P289 416 aa17.11■□□□□ 0.33
HIF3A-209ENST00000525854 LRPPRCP42704 1394 aaKnown RBP17.11■□□□□ 0.33
HIF3A-209ENST00000525854 C1orf167Q5SNV9 1468 aa17.11■□□□□ 0.33
HIF3A-209ENST00000525854 MEX3CQ5U5Q3 659 aaKnown RBP17.1■□□□□ 0.33
HIF3A-209ENST00000525854 LRRC59Q96AG4 307 aaKnown RBP17.1■□□□□ 0.33
HIF3A-209ENST00000525854 ABCC11Q96J66 1382 aa17.1■□□□□ 0.33
HIF3A-209ENST00000525854 TMEM132EQ6IEE7 984 aa17.09■□□□□ 0.33
HIF3A-209ENST00000525854 C14orf93Q9H972 538 aaKnown RBP17.09■□□□□ 0.33
HIF3A-209ENST00000525854 TECPR2O15040 1411 aa17.09■□□□□ 0.33
HIF3A-209ENST00000525854 IFT172Q9UG01 1749 aa17.09■□□□□ 0.33
HIF3A-209ENST00000525854 MYOM2P54296 1465 aa17.07■□□□□ 0.32
HIF3A-209ENST00000525854 POTEAQ6S8J7 498 aa17.07■□□□□ 0.32
HIF3A-209ENST00000525854 SHPRHQ149N8 1683 aa17.07■□□□□ 0.32
HIF3A-209ENST00000525854 NRXN1Q9ULB1 1477 aa17.06■□□□□ 0.32
HIF3A-209ENST00000525854 SIRT1Q96EB6 747 aa17.06■□□□□ 0.32
HIF3A-209ENST00000525854 YTHDC2Q9H6S0 1430 aaKnown RBP17.05■□□□□ 0.32
HIF3A-209ENST00000525854 WAPLQ7Z5K2 1190 aa17.05■□□□□ 0.32
HIF3A-209ENST00000525854 DDX17Q92841 729 aaKnown RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms