RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 ZNF335Q9H4Z2 1342 aaPredicted RBP6.72□□□□□ -1.33
CHMP4A-202ENST00000524955 ZFYVE9O95405 1425 aa6.71□□□□□ -1.34
CHMP4A-202ENST00000524955 CCER1Q8TC90 406 aaPredicted RBP6.71□□□□□ -1.34
CHMP4A-202ENST00000524955 DCAF11Q8TEB1 546 aa6.71□□□□□ -1.34
CHMP4A-202ENST00000524955 STRCQ7RTU9 1775 aa6.71□□□□□ -1.34
CHMP4A-202ENST00000524955 SCAF11Q99590 1463 aaKnown RBP6.71□□□□□ -1.34
CHMP4A-202ENST00000524955 ARHGAP23Q9P227 1491 aa6.71□□□□□ -1.34
CHMP4A-202ENST00000524955 ADGRF5Q8IZF2 1346 aa6.71□□□□□ -1.34
CHMP4A-202ENST00000524955 NEURL4Q96JN8 1562 aa6.7□□□□□ -1.34
CHMP4A-202ENST00000524955 MYO5BQ9ULV0 1848 aa6.7□□□□□ -1.34
CHMP4A-202ENST00000524955 ACIN1Q9UKV3 1341 aaKnown RBP6.7□□□□□ -1.34
CHMP4A-202ENST00000524955 SLIT1O75093 1534 aa6.7□□□□□ -1.34
CHMP4A-202ENST00000524955 SPATA31E1Q6ZUB1 1445 aa6.69□□□□□ -1.34
CHMP4A-202ENST00000524955 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.69□□□□□ -1.34
CHMP4A-202ENST00000524955 SETD1BQ9UPS6 1966 aaKnown RBP6.68□□□□□ -1.34
CHMP4A-202ENST00000524955 NEXMIFQ5QGS0 1516 aa6.68□□□□□ -1.34
CHMP4A-202ENST00000524955 TMEM132EQ6IEE7 984 aa6.68□□□□□ -1.34
CHMP4A-202ENST00000524955 DMRT2Q9Y5R5 561 aa6.68□□□□□ -1.34
CHMP4A-202ENST00000524955 PLEKHG1Q9ULL1 1385 aa6.68□□□□□ -1.34
CHMP4A-202ENST00000524955 VGFO15240 615 aaPredicted RBP6.67□□□□□ -1.34
CHMP4A-202ENST00000524955 HDGFP51858 240 aaKnown RBP6.67□□□□□ -1.34
CHMP4A-202ENST00000524955 CFAP70Q5T0N1 1121 aa6.67□□□□□ -1.34
CHMP4A-202ENST00000524955 L3MBTL2Q969R5 705 aa6.67□□□□□ -1.34
CHMP4A-202ENST00000524955 STK26Q9P289 416 aa6.67□□□□□ -1.34
CHMP4A-202ENST00000524955 METP08581 1390 aa6.67□□□□□ -1.34
CHMP4A-202ENST00000524955 ADAMTS13Q76LX8 1427 aa6.67□□□□□ -1.34
CHMP4A-202ENST00000524955 MED14O60244 1454 aa6.66□□□□□ -1.34
CHMP4A-202ENST00000524955 POLR1AO95602 1720 aaPredicted RBP6.66□□□□□ -1.34
CHMP4A-202ENST00000524955 RPGRIP1LQ68CZ1 1315 aa6.66□□□□□ -1.34
CHMP4A-202ENST00000524955 IQGAP1P46940 1657 aa6.65□□□□□ -1.34
CHMP4A-202ENST00000524955 KIF1BO60333 1816 aa6.65□□□□□ -1.34
CHMP4A-202ENST00000524955 KCNA6P17658 529 aa6.65□□□□□ -1.34
CHMP4A-202ENST00000524955 AMOTL2Q9Y2J4 779 aa6.65□□□□□ -1.34
CHMP4A-202ENST00000524955 PTPRUQ92729 1446 aa6.65□□□□□ -1.35
CHMP4A-202ENST00000524955 NBPF1Q3BBV0 1214 aa6.64□□□□□ -1.35
CHMP4A-202ENST00000524955 NBPF8Q3BBV2 869 aa6.64□□□□□ -1.35
CHMP4A-202ENST00000524955 PROSER2Q86WR7 435 aaPredicted RBP6.64□□□□□ -1.35
CHMP4A-202ENST00000524955 CERKQ8TCT0 537 aa6.64□□□□□ -1.35
CHMP4A-202ENST00000524955 TBX22Q9Y458 520 aa6.64□□□□□ -1.35
CHMP4A-202ENST00000524955 TONSLQ96HA7 1378 aa6.64□□□□□ -1.35
CHMP4A-202ENST00000524955 KDM5AP29375 1690 aaKnown RBP6.64□□□□□ -1.35
CHMP4A-202ENST00000524955 SAFB2Q14151 953 aaKnown RBP eCLIP6.63□□□□□ -1.35
CHMP4A-202ENST00000524955 NRXN3Q9Y4C0 1643 aa6.63□□□□□ -1.35
CHMP4A-202ENST00000524955 PPLO60437 1756 aa6.62□□□□□ -1.35
CHMP4A-202ENST00000524955 LTBP4Q8N2S1 1624 aa6.62□□□□□ -1.35
CHMP4A-202ENST00000524955 ALKQ9UM73 1620 aa6.62□□□□□ -1.35
CHMP4A-202ENST00000524955 PIK3C2GO75747 1445 aa6.62□□□□□ -1.35
CHMP4A-202ENST00000524955 WAPLQ7Z5K2 1190 aa6.62□□□□□ -1.35
CHMP4A-202ENST00000524955 C14orf37Q86TY3 774 aa6.62□□□□□ -1.35
CHMP4A-202ENST00000524955 C14orf93Q9H972 538 aaKnown RBP6.62□□□□□ -1.35
CHMP4A-202ENST00000524955 TRAK1Q9UPV9 953 aa6.62□□□□□ -1.35
CHMP4A-202ENST00000524955 STRCP1A6NGW2 1772 aa6.62□□□□□ -1.35
CHMP4A-202ENST00000524955 SETBP1Q9Y6X0 1596 aa6.61□□□□□ -1.35
CHMP4A-202ENST00000524955 ASXL1Q8IXJ9 1541 aa6.61□□□□□ -1.35
CHMP4A-202ENST00000524955 MYOM2P54296 1465 aa6.61□□□□□ -1.35
CHMP4A-202ENST00000524955 TMEM94Q12767 1356 aa6.61□□□□□ -1.35
CHMP4A-202ENST00000524955 SCAF1Q9H7N4 1312 aaKnown RBP6.61□□□□□ -1.35
CHMP4A-202ENST00000524955 PIP4K2BP78356 416 aa6.61□□□□□ -1.35
CHMP4A-202ENST00000524955 IFT172Q9UG01 1749 aa6.61□□□□□ -1.35
CHMP4A-202ENST00000524955 LRRC7Q96NW7 1537 aa6.6□□□□□ -1.35
CHMP4A-202ENST00000524955 PRAG1Q86YV5 1406 aa6.6□□□□□ -1.35
CHMP4A-202ENST00000524955 ROBO2Q9HCK4 1378 aa6.6□□□□□ -1.35
CHMP4A-202ENST00000524955 PLEKHH1Q9ULM0 1364 aa6.6□□□□□ -1.35
CHMP4A-202ENST00000524955 NUTM2FA1L443 756 aa6.6□□□□□ -1.35
CHMP4A-202ENST00000524955 UBAP1LF5GYI3 381 aa6.6□□□□□ -1.35
CHMP4A-202ENST00000524955 NRXN1Q9ULB1 1477 aa6.6□□□□□ -1.35
CHMP4A-202ENST00000524955 PRAM1Q96QH2 718 aa6.59□□□□□ -1.35
CHMP4A-202ENST00000524955 HIRIP3Q9BW71 556 aaPredicted RBP6.59□□□□□ -1.35
CHMP4A-202ENST00000524955 YTHDC2Q9H6S0 1430 aaKnown RBP6.59□□□□□ -1.36
CHMP4A-202ENST00000524955 LRPPRCP42704 1394 aaKnown RBP6.58□□□□□ -1.36
CHMP4A-202ENST00000524955 MINK1Q8N4C8 1332 aaPredicted RBP6.58□□□□□ -1.36
CHMP4A-202ENST00000524955 DIP2AQ14689 1571 aa6.58□□□□□ -1.36
CHMP4A-202ENST00000524955 POGKQ9P215 609 aa6.58□□□□□ -1.36
CHMP4A-202ENST00000524955 ROCK2O75116 1388 aaKnown RBP6.57□□□□□ -1.36
CHMP4A-202ENST00000524955 PIK3R4Q99570 1358 aa6.57□□□□□ -1.36
CHMP4A-202ENST00000524955 CPS1P31327 1500 aa6.57□□□□□ -1.36
CHMP4A-202ENST00000524955 SETD1AO15047 1707 aaKnown RBP6.57□□□□□ -1.36
CHMP4A-202ENST00000524955 CARD11Q9BXL7 1154 aa6.57□□□□□ -1.36
CHMP4A-202ENST00000524955 ADGRB1O14514 1584 aa6.57□□□□□ -1.36
CHMP4A-202ENST00000524955 NWD1Q149M9 1564 aa6.57□□□□□ -1.36
CHMP4A-202ENST00000524955 CLSPNQ9HAW4 1339 aa6.56□□□□□ -1.36
CHMP4A-202ENST00000524955 ILDR1Q86SU0 546 aaPredicted RBP6.56□□□□□ -1.36
CHMP4A-202ENST00000524955 DDX17Q92841 729 aaKnown RBP6.56□□□□□ -1.36
CHMP4A-202ENST00000524955 STAC3Q96MF2 364 aa6.56□□□□□ -1.36
CHMP4A-202ENST00000524955 XRN1Q8IZH2 1706 aaKnown RBP6.56□□□□□ -1.36
CHMP4A-202ENST00000524955 MSH6P52701 1360 aa6.56□□□□□ -1.36
CHMP4A-202ENST00000524955 ABCC11Q96J66 1382 aa6.56□□□□□ -1.36
CHMP4A-202ENST00000524955 CHD2O14647 1828 aaKnown RBP6.55□□□□□ -1.36
CHMP4A-202ENST00000524955 NKTRP30414 1462 aaKnown RBP6.55□□□□□ -1.36
CHMP4A-202ENST00000524955 TOM1O60784 492 aa6.54□□□□□ -1.36
CHMP4A-202ENST00000524955 ATF3P18847 181 aa6.54□□□□□ -1.36
CHMP4A-202ENST00000524955 ORAI2Q96SN7 254 aa6.54□□□□□ -1.36
CHMP4A-202ENST00000524955 C19orf44Q9H6X5 657 aa6.54□□□□□ -1.36
CHMP4A-202ENST00000524955 SLAIN2Q9P270 581 aa6.54□□□□□ -1.36
CHMP4A-202ENST00000524955 TRPM1Q7Z4N2 1603 aa6.54□□□□□ -1.36
CHMP4A-202ENST00000524955 XIRP1Q702N8 1843 aaKnown RBP6.53□□□□□ -1.36
CHMP4A-202ENST00000524955 PTCH1Q13635 1447 aa6.53□□□□□ -1.36
CHMP4A-202ENST00000524955 PLEKHG5O94827 1062 aa6.53□□□□□ -1.36
CHMP4A-202ENST00000524955 XPCQ01831 940 aaPredicted RBP6.53□□□□□ -1.36
CHMP4A-202ENST00000524955 FBXO41Q8TF61 875 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms