RNA–Protein interactions for RNA: ENST00000523469.5

CPNE3-206, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 656 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-206ENST00000523469 REPIN1Q9BWE0 567 aaKnown RBP13.11□□□□□ -0.31
CPNE3-206ENST00000523469 GPBP1L1Q9HC44 474 aaPredicted RBP13.11□□□□□ -0.31
CPNE3-206ENST00000523469 GOLGA8CPA6NN73 597 aa13.1□□□□□ -0.31
CPNE3-206ENST00000523469 GIGYF2Q6Y7W6 1299 aaKnown RBP13.1□□□□□ -0.31
CPNE3-206ENST00000523469 KDM4CQ9H3R0 1056 aa13.1□□□□□ -0.31
CPNE3-206ENST00000523469 SWT1Q5T5J6 900 aaKnown RBP13.08□□□□□ -0.32
CPNE3-206ENST00000523469 SAMD7Q7Z3H4 446 aa13.07□□□□□ -0.32
CPNE3-206ENST00000523469 FAM217BQ9NTX9 383 aaPredicted RBP13.07□□□□□ -0.32
CPNE3-206ENST00000523469 SLC4A3P48751 1232 aa13.06□□□□□ -0.32
CPNE3-206ENST00000523469 SULF1Q8IWU6 871 aa13.06□□□□□ -0.32
CPNE3-206ENST00000523469 ANKK1Q8NFD2 765 aa13.06□□□□□ -0.32
CPNE3-206ENST00000523469 SSTR3P32745 418 aaPredicted RBP13.04□□□□□ -0.32
CPNE3-206ENST00000523469 SLF2Q8IX21 1173 aa13.04□□□□□ -0.32
CPNE3-206ENST00000523469 LRCH3Q96II8 777 aa13.04□□□□□ -0.32
CPNE3-206ENST00000523469 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.03□□□□□ -0.32
CPNE3-206ENST00000523469 DDX11L8A8MPP1 907 aa13.02□□□□□ -0.33
CPNE3-206ENST00000523469 MS4A1P11836 297 aa13.02□□□□□ -0.33
CPNE3-206ENST00000523469 WNT2BQ93097 391 aa13.02□□□□□ -0.33
CPNE3-206ENST00000523469 RSPH4AQ5TD94 716 aa13.01□□□□□ -0.33
CPNE3-206ENST00000523469 SOWAHBA6NEL2 793 aa13□□□□□ -0.33
CPNE3-206ENST00000523469 RNF40O75150 1001 aa12.98□□□□□ -0.33
CPNE3-206ENST00000523469 CD46P15529 392 aa12.98□□□□□ -0.33
CPNE3-206ENST00000523469 RDH13Q8NBN7 331 aa12.98□□□□□ -0.33
CPNE3-206ENST00000523469 NECTIN2Q92692 538 aa12.98□□□□□ -0.33
CPNE3-206ENST00000523469 DDRGK1Q96HY6 314 aa12.98□□□□□ -0.33
CPNE3-206ENST00000523469 FAM117AQ9C073 453 aa12.97□□□□□ -0.33
CPNE3-206ENST00000523469 MYT1LQ9UL68 1186 aa12.97□□□□□ -0.33
CPNE3-206ENST00000523469 KCTD12Q96CX2 325 aaKnown RBP12.96□□□□□ -0.33
CPNE3-206ENST00000523469 BEGAINQ9BUH8 593 aa12.96□□□□□ -0.33
CPNE3-206ENST00000523469 SLC10A3P09131 477 aa12.95□□□□□ -0.34
CPNE3-206ENST00000523469 BCAMP50895 628 aa12.95□□□□□ -0.34
CPNE3-206ENST00000523469 SPNS2Q8IVW8 549 aa12.95□□□□□ -0.34
CPNE3-206ENST00000523469 THSD4Q6ZMP0 1018 aa12.94□□□□□ -0.34
CPNE3-206ENST00000523469 IL27Q8NEV9 243 aa12.93□□□□□ -0.34
CPNE3-206ENST00000523469 TSR3Q9UJK0 312 aaKnown RBP12.93□□□□□ -0.34
CPNE3-206ENST00000523469 HPS5Q9UPZ3 1129 aa12.93□□□□□ -0.34
CPNE3-206ENST00000523469 PPP4CP60510 307 aa12.92□□□□□ -0.34
CPNE3-206ENST00000523469 GCGRP47871 477 aa12.91□□□□□ -0.34
CPNE3-206ENST00000523469 PLEKHG3A1L390 1219 aa12.9□□□□□ -0.34
CPNE3-206ENST00000523469 CFHP08603 1231 aa12.89□□□□□ -0.35
CPNE3-206ENST00000523469 PLSCR2Q9NRY7 297 aa12.89□□□□□ -0.35
CPNE3-206ENST00000523469 DIXDC1Q155Q3 683 aa12.88□□□□□ -0.35
CPNE3-206ENST00000523469 KMT5BQ4FZB7 885 aa12.88□□□□□ -0.35
CPNE3-206ENST00000523469 TMEM132AQ24JP5 1023 aa12.87□□□□□ -0.35
CPNE3-206ENST00000523469 NUTM1Q86Y26 1132 aa12.87□□□□□ -0.35
CPNE3-206ENST00000523469 PRR14Q9BWN1 585 aa12.87□□□□□ -0.35
CPNE3-206ENST00000523469 RNF166Q96A37 237 aaPredicted RBP12.86□□□□□ -0.35
CPNE3-206ENST00000523469 WBP1LQ9NX94 342 aa12.86□□□□□ -0.35
CPNE3-206ENST00000523469 KDM4AO75164 1064 aa12.85□□□□□ -0.35
CPNE3-206ENST00000523469 RSPH6AQ9H0K4 717 aa12.85□□□□□ -0.35
CPNE3-206ENST00000523469 USP46P62068 366 aa12.84□□□□□ -0.35
CPNE3-206ENST00000523469 NYAP1Q6ZVC0 841 aa12.84□□□□□ -0.35
CPNE3-206ENST00000523469 SPIRE2Q8WWL2 714 aa12.84□□□□□ -0.35
CPNE3-206ENST00000523469 TBC1D2Q9BYX2 928 aa12.84□□□□□ -0.35
CPNE3-206ENST00000523469 PTPN5P54829 565 aa12.83□□□□□ -0.36
CPNE3-206ENST00000523469 ACTN4O43707 911 aaKnown RBP12.82□□□□□ -0.36
CPNE3-206ENST00000523469 GOPCQ9HD26 462 aa12.81□□□□□ -0.36
CPNE3-206ENST00000523469 APLP1P51693 650 aa12.8□□□□□ -0.36
CPNE3-206ENST00000523469 FUT2Q10981 343 aa12.8□□□□□ -0.36
CPNE3-206ENST00000523469 GRIPAP1Q4V328 841 aa12.8□□□□□ -0.36
CPNE3-206ENST00000523469 SH3D19Q5HYK7 790 aa12.8□□□□□ -0.36
CPNE3-206ENST00000523469 MYSM1Q5VVJ2 828 aa12.79□□□□□ -0.36
CPNE3-206ENST00000523469 ATP6V1AP38606 617 aa12.78□□□□□ -0.36
CPNE3-206ENST00000523469 MMRN1Q13201 1228 aa12.78□□□□□ -0.36
CPNE3-206ENST00000523469 HCSTQ9UBK5 93 aa12.78□□□□□ -0.36
CPNE3-206ENST00000523469 HOXA2O43364 376 aa12.77□□□□□ -0.37
CPNE3-206ENST00000523469 SKIV2LQ15477 1246 aaKnown RBP12.77□□□□□ -0.37
CPNE3-206ENST00000523469 MOXD2PA6NHM9 499 aa12.75□□□□□ -0.37
CPNE3-206ENST00000523469 GJA5P36382 358 aa12.75□□□□□ -0.37
CPNE3-206ENST00000523469 PCDHB3Q9Y5E6 796 aa12.75□□□□□ -0.37
CPNE3-206ENST00000523469 RIC3Q7Z5B4 369 aa12.74□□□□□ -0.37
CPNE3-206ENST00000523469 SPTLC1O15269 473 aa12.73□□□□□ -0.37
CPNE3-206ENST00000523469 CLK2P49760 499 aaKnown RBP12.73□□□□□ -0.37
CPNE3-206ENST00000523469 RSBN1LQ6PCB5 846 aaPredicted RBP12.73□□□□□ -0.37
CPNE3-206ENST00000523469 PCMTD1Q96MG8 357 aaPredicted RBP12.73□□□□□ -0.37
CPNE3-206ENST00000523469 POLR3EQ9NVU0 708 aa12.73□□□□□ -0.37
CPNE3-206ENST00000523469 NDUFV2P19404 249 aa12.72□□□□□ -0.37
CPNE3-206ENST00000523469 MORN1Q5T089 497 aa12.72□□□□□ -0.37
CPNE3-206ENST00000523469 FDX1P10109 184 aa12.71□□□□□ -0.37
CPNE3-206ENST00000523469 PUS10Q3MIT2 529 aaKnown RBP12.71□□□□□ -0.37
CPNE3-206ENST00000523469 TUSC1Q2TAM9 212 aa12.7□□□□□ -0.38
CPNE3-206ENST00000523469 HLA-CQ95604 372 aa12.69□□□□□ -0.38
CPNE3-206ENST00000523469 LIMD1Q9UGP4 676 aa12.69□□□□□ -0.38
CPNE3-206ENST00000523469 NR1I2O75469 434 aa12.68□□□□□ -0.38
CPNE3-206ENST00000523469 GUCA2AQ02747 115 aa12.67□□□□□ -0.38
CPNE3-206ENST00000523469 BLOC1S3Q6QNY0 202 aa12.67□□□□□ -0.38
CPNE3-206ENST00000523469 PROCA1Q8NCQ7 364 aaPredicted RBP12.67□□□□□ -0.38
CPNE3-206ENST00000523469 ATP1B4Q9UN42 357 aaPredicted RBP12.67□□□□□ -0.38
CPNE3-206ENST00000523469 SLC27A5Q9Y2P5 690 aa12.67□□□□□ -0.38
CPNE3-206ENST00000523469 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.66□□□□□ -0.38
CPNE3-206ENST00000523469 PCDHGC3Q9UN70 934 aa12.66□□□□□ -0.38
CPNE3-206ENST00000523469 COPS2P61201 443 aa12.65□□□□□ -0.38
CPNE3-206ENST00000523469 Q3C1V9 767 aa12.65□□□□□ -0.38
CPNE3-206ENST00000523469 SCUBE3Q8IX30 993 aa12.65□□□□□ -0.38
CPNE3-206ENST00000523469 PCDHB15Q9Y5E8 787 aa12.65□□□□□ -0.38
CPNE3-206ENST00000523469 PRPF38BQ5VTL8 546 aaKnown RBP12.64□□□□□ -0.39
CPNE3-206ENST00000523469 MTRQ99707 1265 aa12.64□□□□□ -0.39
CPNE3-206ENST00000523469 CSPP1Q1MSJ5 1256 aa12.63□□□□□ -0.39
CPNE3-206ENST00000523469 TJAP1Q5JTD0 557 aa12.63□□□□□ -0.39
CPNE3-206ENST00000523469 IL21Q9HBE4 155 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms