RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, human

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDCBP-208	ENST00000520228	LAPTM4B	Q86VI4	370 aa		14.09	□□□□□ -0.15
SDCBP-208	ENST00000520228	NBPF3	Q9H094	633 aa		14.09	□□□□□ -0.15
SDCBP-208	ENST00000520228	FAM117A	Q9C073	453 aa		14.08	□□□□□ -0.16
SDCBP-208	ENST00000520228	SSTR3	P32745	418 aa	Predicted RBP	14.07	□□□□□ -0.16
SDCBP-208	ENST00000520228	ANKRD13D	Q6ZTN6	518 aa		14.07	□□□□□ -0.16
SDCBP-208	ENST00000520228	PLEKHG3	A1L390	1219 aa		14.04	□□□□□ -0.16
SDCBP-208	ENST00000520228	CDAN1	Q8IWY9	1227 aa		14.03	□□□□□ -0.16
SDCBP-208	ENST00000520228	IL27	Q8NEV9	243 aa		14.03	□□□□□ -0.16
SDCBP-208	ENST00000520228	DDRGK1	Q96HY6	314 aa		14.03	□□□□□ -0.16
SDCBP-208	ENST00000520228	MRPL50	Q8N5N7	158 aa	Known RBP	14.02	□□□□□ -0.17
SDCBP-208	ENST00000520228	SWT1	Q5T5J6	900 aa	Known RBP	14.01	□□□□□ -0.17
SDCBP-208	ENST00000520228	ZFR	Q96KR1	1074 aa	Known RBP	14.01	□□□□□ -0.17
SDCBP-208	ENST00000520228	ABCC9	O60706	1549 aa		13.99	□□□□□ -0.17
SDCBP-208	ENST00000520228	CD46	P15529	392 aa		13.98	□□□□□ -0.17
SDCBP-208	ENST00000520228	SAMD7	Q7Z3H4	446 aa		13.98	□□□□□ -0.17
SDCBP-208	ENST00000520228	SULF1	Q8IWU6	871 aa		13.97	□□□□□ -0.17
SDCBP-208	ENST00000520228	BEGAIN	Q9BUH8	593 aa		13.97	□□□□□ -0.17
SDCBP-208	ENST00000520228	DDX11L8	A8MPP1	907 aa		13.95	□□□□□ -0.18
SDCBP-208	ENST00000520228	SLC10A3	P09131	477 aa		13.94	□□□□□ -0.18
SDCBP-208	ENST00000520228	HDGF	P51858	240 aa	Known RBP	13.93	□□□□□ -0.18
SDCBP-208	ENST00000520228	SLF2	Q8IX21	1173 aa		13.91	□□□□□ -0.18
SDCBP-208	ENST00000520228	STAC3	Q96MF2	364 aa		13.91	□□□□□ -0.18
SDCBP-208	ENST00000520228	GOPC	Q9HD26	462 aa		13.89	□□□□□ -0.19
SDCBP-208	ENST00000520228	RDH13	Q8NBN7	331 aa		13.88	□□□□□ -0.19
SDCBP-208	ENST00000520228	LRCH3	Q96II8	777 aa		13.88	□□□□□ -0.19
SDCBP-208	ENST00000520228	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.88	□□□□□ -0.19
SDCBP-208	ENST00000520228	SOWAHB	A6NEL2	793 aa		13.87	□□□□□ -0.19
SDCBP-208	ENST00000520228	GCGR	P47871	477 aa		13.87	□□□□□ -0.19
SDCBP-208	ENST00000520228	ANKK1	Q8NFD2	765 aa		13.87	□□□□□ -0.19
SDCBP-208	ENST00000520228	GOLGA8CP	A6NN73	597 aa		13.86	□□□□□ -0.19
SDCBP-208	ENST00000520228	RSPH4A	Q5TD94	716 aa		13.86	□□□□□ -0.19
SDCBP-208	ENST00000520228	SLC4A3	P48751	1232 aa		13.85	□□□□□ -0.19
SDCBP-208	ENST00000520228	SH3D19	Q5HYK7	790 aa		13.85	□□□□□ -0.19
SDCBP-208	ENST00000520228	SPIRE2	Q8WWL2	714 aa		13.85	□□□□□ -0.19
SDCBP-208	ENST00000520228	TBC1D2	Q9BYX2	928 aa		13.85	□□□□□ -0.19
SDCBP-208	ENST00000520228	WNT2B	Q93097	391 aa		13.84	□□□□□ -0.19
SDCBP-208	ENST00000520228	RSPH6A	Q9H0K4	717 aa		13.84	□□□□□ -0.19
SDCBP-208	ENST00000520228	PCDH10	Q9P2E7	1040 aa		13.84	□□□□□ -0.19
SDCBP-208	ENST00000520228	DIXDC1	Q155Q3	683 aa		13.83	□□□□□ -0.2
SDCBP-208	ENST00000520228	MYSM1	Q5VVJ2	828 aa		13.83	□□□□□ -0.2
SDCBP-208	ENST00000520228	BCAM	P50895	628 aa		13.82	□□□□□ -0.2
SDCBP-208	ENST00000520228	SKIV2L	Q15477	1246 aa	Known RBP	13.81	□□□□□ -0.2
SDCBP-208	ENST00000520228	RNF40	O75150	1001 aa		13.8	□□□□□ -0.2
SDCBP-208	ENST00000520228	KDM4A	O75164	1064 aa		13.8	□□□□□ -0.2
SDCBP-208	ENST00000520228	CFH	P08603	1231 aa		13.79	□□□□□ -0.2
SDCBP-208	ENST00000520228	NECTIN2	Q92692	538 aa		13.79	□□□□□ -0.2
SDCBP-208	ENST00000520228	THSD4	Q6ZMP0	1018 aa		13.78	□□□□□ -0.2
SDCBP-208	ENST00000520228	NUTM1	Q86Y26	1132 aa		13.78	□□□□□ -0.2
SDCBP-208	ENST00000520228	TSR3	Q9UJK0	312 aa	Known RBP	13.78	□□□□□ -0.2
SDCBP-208	ENST00000520228	HPS5	Q9UPZ3	1129 aa		13.78	□□□□□ -0.2
SDCBP-208	ENST00000520228	USP46	P62068	366 aa		13.76	□□□□□ -0.21
SDCBP-208	ENST00000520228	GJA5	P36382	358 aa		13.75	□□□□□ -0.21
SDCBP-208	ENST00000520228	PPP4C	P60510	307 aa		13.75	□□□□□ -0.21
SDCBP-208	ENST00000520228	KCTD12	Q96CX2	325 aa	Known RBP	13.75	□□□□□ -0.21
SDCBP-208	ENST00000520228	MOXD2P	A6NHM9	499 aa		13.74	□□□□□ -0.21
SDCBP-208	ENST00000520228	SPTLC1	O15269	473 aa		13.74	□□□□□ -0.21
SDCBP-208	ENST00000520228	HOXA2	O43364	376 aa		13.74	□□□□□ -0.21
SDCBP-208	ENST00000520228	POLR3E	Q9NVU0	708 aa		13.74	□□□□□ -0.21
SDCBP-208	ENST00000520228	ACTN4	O43707	911 aa	Known RBP	13.73	□□□□□ -0.21
SDCBP-208	ENST00000520228	CLK2	P49760	499 aa	Known RBP	13.73	□□□□□ -0.21
SDCBP-208	ENST00000520228	FUT2	Q10981	343 aa		13.73	□□□□□ -0.21
SDCBP-208	ENST00000520228	TUSC1	Q2TAM9	212 aa		13.73	□□□□□ -0.21
SDCBP-208	ENST00000520228	KMT5B	Q4FZB7	885 aa		13.73	□□□□□ -0.21
SDCBP-208	ENST00000520228	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.73	□□□□□ -0.21
SDCBP-208	ENST00000520228	RIC3	Q7Z5B4	369 aa		13.73	□□□□□ -0.21
SDCBP-208	ENST00000520228	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.73	□□□□□ -0.21
SDCBP-208	ENST00000520228	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
SDCBP-208	ENST00000520228	LIMD1	Q9UGP4	676 aa		13.73	□□□□□ -0.21
SDCBP-208	ENST00000520228	GTF3C3	Q9Y5Q9	886 aa		13.73	□□□□□ -0.21
SDCBP-208	ENST00000520228	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.72	□□□□□ -0.21
SDCBP-208	ENST00000520228	WBP1L	Q9NX94	342 aa		13.72	□□□□□ -0.21
SDCBP-208	ENST00000520228	NDUFV2	P19404	249 aa		13.71	□□□□□ -0.21
SDCBP-208	ENST00000520228	APLP1	P51693	650 aa		13.71	□□□□□ -0.21
SDCBP-208	ENST00000520228	MYT1L	Q9UL68	1186 aa		13.71	□□□□□ -0.21
SDCBP-208	ENST00000520228	PRR14	Q9BWN1	585 aa		13.7	□□□□□ -0.22
SDCBP-208	ENST00000520228	ATP6V1A	P38606	617 aa		13.69	□□□□□ -0.22
SDCBP-208	ENST00000520228	SPNS2	Q8IVW8	549 aa		13.69	□□□□□ -0.22
SDCBP-208	ENST00000520228	HLA-C	Q95604	372 aa		13.69	□□□□□ -0.22
SDCBP-208	ENST00000520228	GUCA2A	Q02747	115 aa		13.66	□□□□□ -0.22
SDCBP-208	ENST00000520228	PCDHGC3	Q9UN70	934 aa		13.66	□□□□□ -0.22
SDCBP-208	ENST00000520228	PCDHB15	Q9Y5E8	787 aa		13.66	□□□□□ -0.22
SDCBP-208	ENST00000520228	FDX1	P10109	184 aa		13.65	□□□□□ -0.22
SDCBP-208	ENST00000520228	GRIPAP1	Q4V328	841 aa		13.65	□□□□□ -0.22
SDCBP-208	ENST00000520228	MORN1	Q5T089	497 aa		13.65	□□□□□ -0.22
SDCBP-208	ENST00000520228	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.65	□□□□□ -0.22
SDCBP-208	ENST00000520228	NYAP1	Q6ZVC0	841 aa		13.64	□□□□□ -0.23
SDCBP-208	ENST00000520228	LILRB3	O75022	631 aa		13.62	□□□□□ -0.23
SDCBP-208	ENST00000520228	PUS10	Q3MIT2	529 aa	Known RBP	13.62	□□□□□ -0.23
SDCBP-208	ENST00000520228	PPP2R2D	Q66LE6	453 aa		13.62	□□□□□ -0.23
SDCBP-208	ENST00000520228	PRPF38B	Q5VTL8	546 aa	Known RBP	13.61	□□□□□ -0.23
SDCBP-208	ENST00000520228	PTPN5	P54829	565 aa		13.6	□□□□□ -0.23
SDCBP-208	ENST00000520228	QPCT	Q16769	361 aa		13.6	□□□□□ -0.23
SDCBP-208	ENST00000520228	SLC27A5	Q9Y2P5	690 aa		13.59	□□□□□ -0.23
SDCBP-208	ENST00000520228	PCDHB3	Q9Y5E6	796 aa		13.59	□□□□□ -0.23
SDCBP-208	ENST00000520228	CSPP1	Q1MSJ5	1256 aa		13.58	□□□□□ -0.24
SDCBP-208	ENST00000520228	RNF166	Q96A37	237 aa	Predicted RBP	13.58	□□□□□ -0.24
SDCBP-208	ENST00000520228	HRC	P23327	699 aa		13.57	□□□□□ -0.24
SDCBP-208	ENST00000520228	BLOC1S3	Q6QNY0	202 aa		13.56	□□□□□ -0.24
SDCBP-208	ENST00000520228	CABLES1	Q8TDN4	633 aa		13.56	□□□□□ -0.24
SDCBP-208	ENST00000520228	ZBTB3	Q9H5J0	574 aa		13.56	□□□□□ -0.24

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