RNA–Protein interactions for RNA: ENST00000519553.1

PTPN12-213, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

TSL 3

Gene PTPN12, Length 395 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-213ENST00000519553 FAM217BQ9NTX9 383 aaPredicted RBP13.64□□□□□ -0.23
PTPN12-213ENST00000519553 DAXXQ9UER7 740 aaPredicted RBP13.64□□□□□ -0.23
PTPN12-213ENST00000519553 MS4A1P11836 297 aa13.63□□□□□ -0.23
PTPN12-213ENST00000519553 ZFRQ96KR1 1074 aaKnown RBP13.63□□□□□ -0.23
PTPN12-213ENST00000519553 SWT1Q5T5J6 900 aaKnown RBP13.62□□□□□ -0.23
PTPN12-213ENST00000519553 SAMD7Q7Z3H4 446 aa13.59□□□□□ -0.23
PTPN12-213ENST00000519553 SSTR3P32745 418 aaPredicted RBP13.58□□□□□ -0.24
PTPN12-213ENST00000519553 FAM117AQ9C073 453 aa13.58□□□□□ -0.24
PTPN12-213ENST00000519553 PCDH10Q9P2E7 1040 aa13.56□□□□□ -0.24
PTPN12-213ENST00000519553 PLEKHG3A1L390 1219 aa13.54□□□□□ -0.24
PTPN12-213ENST00000519553 CD46P15529 392 aa13.54□□□□□ -0.24
PTPN12-213ENST00000519553 STAC3Q96MF2 364 aa13.54□□□□□ -0.24
PTPN12-213ENST00000519553 DDX11L8A8MPP1 907 aa13.53□□□□□ -0.24
PTPN12-213ENST00000519553 SULF1Q8IWU6 871 aa13.53□□□□□ -0.24
PTPN12-213ENST00000519553 SLC10A3P09131 477 aa13.52□□□□□ -0.25
PTPN12-213ENST00000519553 HDGFP51858 240 aaKnown RBP13.51□□□□□ -0.25
PTPN12-213ENST00000519553 ANKK1Q8NFD2 765 aa13.51□□□□□ -0.25
PTPN12-213ENST00000519553 DDRGK1Q96HY6 314 aa13.51□□□□□ -0.25
PTPN12-213ENST00000519553 LRCH3Q96II8 777 aa13.51□□□□□ -0.25
PTPN12-213ENST00000519553 GOLGA8CPA6NN73 597 aa13.5□□□□□ -0.25
PTPN12-213ENST00000519553 SLF2Q8IX21 1173 aa13.5□□□□□ -0.25
PTPN12-213ENST00000519553 IL27Q8NEV9 243 aa13.5□□□□□ -0.25
PTPN12-213ENST00000519553 WNT2BQ93097 391 aa13.5□□□□□ -0.25
PTPN12-213ENST00000519553 BEGAINQ9BUH8 593 aa13.5□□□□□ -0.25
PTPN12-213ENST00000519553 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.5□□□□□ -0.25
PTPN12-213ENST00000519553 SOWAHBA6NEL2 793 aa13.49□□□□□ -0.25
PTPN12-213ENST00000519553 BCAMP50895 628 aa13.48□□□□□ -0.25
PTPN12-213ENST00000519553 RNF40O75150 1001 aa13.47□□□□□ -0.25
PTPN12-213ENST00000519553 TMEM132AQ24JP5 1023 aa13.47□□□□□ -0.25
PTPN12-213ENST00000519553 RDH13Q8NBN7 331 aa13.47□□□□□ -0.25
PTPN12-213ENST00000519553 SLC4A3P48751 1232 aa13.44□□□□□ -0.26
PTPN12-213ENST00000519553 THSD4Q6ZMP0 1018 aa13.44□□□□□ -0.26
PTPN12-213ENST00000519553 KCTD12Q96CX2 325 aaKnown RBP13.43□□□□□ -0.26
PTPN12-213ENST00000519553 CFHP08603 1231 aa13.42□□□□□ -0.26
PTPN12-213ENST00000519553 GCGRP47871 477 aa13.42□□□□□ -0.26
PTPN12-213ENST00000519553 HPS5Q9UPZ3 1129 aa13.42□□□□□ -0.26
PTPN12-213ENST00000519553 RSPH4AQ5TD94 716 aa13.41□□□□□ -0.26
PTPN12-213ENST00000519553 SPNS2Q8IVW8 549 aa13.41□□□□□ -0.26
PTPN12-213ENST00000519553 MYT1LQ9UL68 1186 aa13.41□□□□□ -0.26
PTPN12-213ENST00000519553 SPIRE2Q8WWL2 714 aa13.4□□□□□ -0.26
PTPN12-213ENST00000519553 TSR3Q9UJK0 312 aaKnown RBP13.4□□□□□ -0.26
PTPN12-213ENST00000519553 TBC1D2Q9BYX2 928 aa13.39□□□□□ -0.27
PTPN12-213ENST00000519553 MYSM1Q5VVJ2 828 aa13.37□□□□□ -0.27
PTPN12-213ENST00000519553 NECTIN2Q92692 538 aa13.37□□□□□ -0.27
PTPN12-213ENST00000519553 WBP1LQ9NX94 342 aa13.37□□□□□ -0.27
PTPN12-213ENST00000519553 KDM4AO75164 1064 aa13.36□□□□□ -0.27
PTPN12-213ENST00000519553 PPP4CP60510 307 aa13.36□□□□□ -0.27
PTPN12-213ENST00000519553 SH3D19Q5HYK7 790 aa13.36□□□□□ -0.27
PTPN12-213ENST00000519553 GOPCQ9HD26 462 aa13.35□□□□□ -0.27
PTPN12-213ENST00000519553 APLP1P51693 650 aa13.34□□□□□ -0.27
PTPN12-213ENST00000519553 NUTM1Q86Y26 1132 aa13.34□□□□□ -0.27
PTPN12-213ENST00000519553 FUT2Q10981 343 aa13.33□□□□□ -0.28
PTPN12-213ENST00000519553 DIXDC1Q155Q3 683 aa13.33□□□□□ -0.28
PTPN12-213ENST00000519553 KMT5BQ4FZB7 885 aa13.33□□□□□ -0.28
PTPN12-213ENST00000519553 RSPH6AQ9H0K4 717 aa13.33□□□□□ -0.28
PTPN12-213ENST00000519553 HOXA2O43364 376 aa13.32□□□□□ -0.28
PTPN12-213ENST00000519553 ACTN4O43707 911 aaKnown RBP13.32□□□□□ -0.28
PTPN12-213ENST00000519553 USP46P62068 366 aa13.32□□□□□ -0.28
PTPN12-213ENST00000519553 MOXD2PA6NHM9 499 aa13.31□□□□□ -0.28
PTPN12-213ENST00000519553 SKIV2LQ15477 1246 aaKnown RBP13.3□□□□□ -0.28
PTPN12-213ENST00000519553 HLA-CQ95604 372 aa13.3□□□□□ -0.28
PTPN12-213ENST00000519553 RNF166Q96A37 237 aaPredicted RBP13.3□□□□□ -0.28
PTPN12-213ENST00000519553 PRR14Q9BWN1 585 aa13.29□□□□□ -0.28
PTPN12-213ENST00000519553 LIMD1Q9UGP4 676 aa13.29□□□□□ -0.28
PTPN12-213ENST00000519553 NDUFV2P19404 249 aa13.28□□□□□ -0.28
PTPN12-213ENST00000519553 PTPN5P54829 565 aa13.28□□□□□ -0.28
PTPN12-213ENST00000519553 RSBN1LQ6PCB5 846 aaPredicted RBP13.28□□□□□ -0.28
PTPN12-213ENST00000519553 POLR3EQ9NVU0 708 aa13.28□□□□□ -0.28
PTPN12-213ENST00000519553 SPTLC1O15269 473 aa13.27□□□□□ -0.29
PTPN12-213ENST00000519553 CLK2P49760 499 aaKnown RBP13.27□□□□□ -0.29
PTPN12-213ENST00000519553 ATP6V1AP38606 617 aa13.26□□□□□ -0.29
PTPN12-213ENST00000519553 GUCA2AQ02747 115 aa13.26□□□□□ -0.29
PTPN12-213ENST00000519553 RIC3Q7Z5B4 369 aa13.26□□□□□ -0.29
PTPN12-213ENST00000519553 GJA5P36382 358 aa13.25□□□□□ -0.29
PTPN12-213ENST00000519553 MORN1Q5T089 497 aa13.25□□□□□ -0.29
PTPN12-213ENST00000519553 NYAP1Q6ZVC0 841 aa13.25□□□□□ -0.29
PTPN12-213ENST00000519553 PROCA1Q8NCQ7 364 aaPredicted RBP13.25□□□□□ -0.29
PTPN12-213ENST00000519553 MMRN1Q13201 1228 aa13.24□□□□□ -0.29
PTPN12-213ENST00000519553 PUS10Q3MIT2 529 aaKnown RBP13.24□□□□□ -0.29
PTPN12-213ENST00000519553 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.24□□□□□ -0.29
PTPN12-213ENST00000519553 PCDHGC3Q9UN70 934 aa13.24□□□□□ -0.29
PTPN12-213ENST00000519553 TUSC1Q2TAM9 212 aa13.23□□□□□ -0.29
PTPN12-213ENST00000519553 GRIPAP1Q4V328 841 aa13.22□□□□□ -0.29
PTPN12-213ENST00000519553 PCMTD1Q96MG8 357 aaPredicted RBP13.22□□□□□ -0.29
PTPN12-213ENST00000519553 PCDHB3Q9Y5E6 796 aa13.22□□□□□ -0.29
PTPN12-213ENST00000519553 FDX1P10109 184 aa13.21□□□□□ -0.29
PTPN12-213ENST00000519553 PCDHB15Q9Y5E8 787 aa13.21□□□□□ -0.29
PTPN12-213ENST00000519553 FBXO31Q5XUX0 539 aaPredicted RBP13.2□□□□□ -0.3
PTPN12-213ENST00000519553 BLOC1S3Q6QNY0 202 aa13.2□□□□□ -0.3
PTPN12-213ENST00000519553 SLC27A5Q9Y2P5 690 aa13.19□□□□□ -0.3
PTPN12-213ENST00000519553 HCSTQ9UBK5 93 aa13.18□□□□□ -0.3
PTPN12-213ENST00000519553 QPCTQ16769 361 aa13.17□□□□□ -0.3
PTPN12-213ENST00000519553 CSPP1Q1MSJ5 1256 aa13.16□□□□□ -0.3
PTPN12-213ENST00000519553 LILRB3O75022 631 aa13.15□□□□□ -0.3
PTPN12-213ENST00000519553 COPS2P61201 443 aa13.15□□□□□ -0.3
PTPN12-213ENST00000519553 PRPF38BQ5VTL8 546 aaKnown RBP13.14□□□□□ -0.31
PTPN12-213ENST00000519553 SCUBE3Q8IX30 993 aa13.14□□□□□ -0.31
PTPN12-213ENST00000519553 CABLES1Q8TDN4 633 aa13.14□□□□□ -0.31
PTPN12-213ENST00000519553 MTRQ99707 1265 aa13.14□□□□□ -0.31
PTPN12-213ENST00000519553 HRCP23327 699 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms