RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 SULF1Q8IWU6 871 aa12.42□□□□□ -0.42
CPNE3-201ENST00000517354 KRTAP3-3Q9BYR6 98 aa12.42□□□□□ -0.42
CPNE3-201ENST00000517354 KRTAP3-2Q9BYR7 98 aa12.42□□□□□ -0.42
CPNE3-201ENST00000517354 TMEM134Q9H6X4 195 aa12.42□□□□□ -0.42
CPNE3-201ENST00000517354 ZFRQ96KR1 1074 aaKnown RBP12.41□□□□□ -0.42
CPNE3-201ENST00000517354 DDX11L8A8MPP1 907 aa12.4□□□□□ -0.42
CPNE3-201ENST00000517354 HRO43593 1189 aa12.4□□□□□ -0.42
CPNE3-201ENST00000517354 SWT1Q5T5J6 900 aaKnown RBP12.4□□□□□ -0.42
CPNE3-201ENST00000517354 IL27Q8NEV9 243 aa12.4□□□□□ -0.42
CPNE3-201ENST00000517354 REPIN1Q9BWE0 567 aaKnown RBP12.4□□□□□ -0.42
CPNE3-201ENST00000517354 RNF40O75150 1001 aa12.39□□□□□ -0.43
CPNE3-201ENST00000517354 SAMD7Q7Z3H4 446 aa12.38□□□□□ -0.43
CPNE3-201ENST00000517354 SLF2Q8IX21 1173 aa12.38□□□□□ -0.43
CPNE3-201ENST00000517354 RDH13Q8NBN7 331 aa12.38□□□□□ -0.43
CPNE3-201ENST00000517354 ANKK1Q8NFD2 765 aa12.38□□□□□ -0.43
CPNE3-201ENST00000517354 TMUB1Q9BVT8 246 aa12.38□□□□□ -0.43
CPNE3-201ENST00000517354 FAM217BQ9NTX9 383 aaPredicted RBP12.38□□□□□ -0.43
CPNE3-201ENST00000517354 DDRGK1Q96HY6 314 aa12.37□□□□□ -0.43
CPNE3-201ENST00000517354 LRCH3Q96II8 777 aa12.37□□□□□ -0.43
CPNE3-201ENST00000517354 PCDH10Q9P2E7 1040 aa12.37□□□□□ -0.43
CPNE3-201ENST00000517354 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.36□□□□□ -0.43
CPNE3-201ENST00000517354 WNT2BQ93097 391 aa12.35□□□□□ -0.43
CPNE3-201ENST00000517354 FAM117AQ9C073 453 aa12.35□□□□□ -0.43
CPNE3-201ENST00000517354 BEGAINQ9BUH8 593 aa12.34□□□□□ -0.43
CPNE3-201ENST00000517354 MS4A1P11836 297 aa12.33□□□□□ -0.44
CPNE3-201ENST00000517354 TMEM132AQ24JP5 1023 aa12.32□□□□□ -0.44
CPNE3-201ENST00000517354 NECTIN2Q92692 538 aa12.32□□□□□ -0.44
CPNE3-201ENST00000517354 ATP1B4Q9UN42 357 aaPredicted RBP12.32□□□□□ -0.44
CPNE3-201ENST00000517354 NUTM1Q86Y26 1132 aa12.31□□□□□ -0.44
CPNE3-201ENST00000517354 PPP4CP60510 307 aa12.3□□□□□ -0.44
CPNE3-201ENST00000517354 RSPH6AQ9H0K4 717 aa12.29□□□□□ -0.44
CPNE3-201ENST00000517354 CD46P15529 392 aa12.28□□□□□ -0.44
CPNE3-201ENST00000517354 DIXDC1Q155Q3 683 aa12.28□□□□□ -0.44
CPNE3-201ENST00000517354 KCTD12Q96CX2 325 aaKnown RBP12.28□□□□□ -0.44
CPNE3-201ENST00000517354 SOWAHBA6NEL2 793 aa12.27□□□□□ -0.45
CPNE3-201ENST00000517354 HPS5Q9UPZ3 1129 aa12.26□□□□□ -0.45
CPNE3-201ENST00000517354 BCAMP50895 628 aa12.25□□□□□ -0.45
CPNE3-201ENST00000517354 KMT5BQ4FZB7 885 aa12.25□□□□□ -0.45
CPNE3-201ENST00000517354 TSR3Q9UJK0 312 aaKnown RBP12.25□□□□□ -0.45
CPNE3-201ENST00000517354 SLC10A3P09131 477 aa12.24□□□□□ -0.45
CPNE3-201ENST00000517354 MYT1LQ9UL68 1186 aa12.24□□□□□ -0.45
CPNE3-201ENST00000517354 GCGRP47871 477 aa12.23□□□□□ -0.45
CPNE3-201ENST00000517354 PLEKHG3A1L390 1219 aa12.22□□□□□ -0.45
CPNE3-201ENST00000517354 CFHP08603 1231 aa12.22□□□□□ -0.45
CPNE3-201ENST00000517354 PRR14Q9BWN1 585 aa12.22□□□□□ -0.45
CPNE3-201ENST00000517354 TBC1D2Q9BYX2 928 aa12.22□□□□□ -0.45
CPNE3-201ENST00000517354 KDM4AO75164 1064 aa12.21□□□□□ -0.45
CPNE3-201ENST00000517354 GRIPAP1Q4V328 841 aa12.21□□□□□ -0.45
CPNE3-201ENST00000517354 THSD4Q6ZMP0 1018 aa12.2□□□□□ -0.46
CPNE3-201ENST00000517354 PTPN5P54829 565 aa12.19□□□□□ -0.46
CPNE3-201ENST00000517354 USP46P62068 366 aa12.19□□□□□ -0.46
CPNE3-201ENST00000517354 SPIRE2Q8WWL2 714 aa12.19□□□□□ -0.46
CPNE3-201ENST00000517354 PCMTD1Q96MG8 357 aaPredicted RBP12.19□□□□□ -0.46
CPNE3-201ENST00000517354 POLR3EQ9NVU0 708 aa12.18□□□□□ -0.46
CPNE3-201ENST00000517354 SKIV2LQ15477 1246 aaKnown RBP12.16□□□□□ -0.46
CPNE3-201ENST00000517354 SPNS2Q8IVW8 549 aa12.16□□□□□ -0.46
CPNE3-201ENST00000517354 WBP1LQ9NX94 342 aa12.16□□□□□ -0.46
CPNE3-201ENST00000517354 SH3D19Q5HYK7 790 aa12.15□□□□□ -0.46
CPNE3-201ENST00000517354 ATP6V1AP38606 617 aa12.14□□□□□ -0.47
CPNE3-201ENST00000517354 RIC3Q7Z5B4 369 aa12.14□□□□□ -0.47
CPNE3-201ENST00000517354 GOPCQ9HD26 462 aa12.14□□□□□ -0.47
CPNE3-201ENST00000517354 ACTN4O43707 911 aaKnown RBP12.13□□□□□ -0.47
CPNE3-201ENST00000517354 FUT2Q10981 343 aa12.13□□□□□ -0.47
CPNE3-201ENST00000517354 MYSM1Q5VVJ2 828 aa12.13□□□□□ -0.47
CPNE3-201ENST00000517354 NYAP1Q6ZVC0 841 aa12.12□□□□□ -0.47
CPNE3-201ENST00000517354 RNF166Q96A37 237 aaPredicted RBP12.12□□□□□ -0.47
CPNE3-201ENST00000517354 MOXD2PA6NHM9 499 aa12.11□□□□□ -0.47
CPNE3-201ENST00000517354 NDUFV2P19404 249 aa12.11□□□□□ -0.47
CPNE3-201ENST00000517354 CLK2P49760 499 aaKnown RBP12.1□□□□□ -0.47
CPNE3-201ENST00000517354 APLP1P51693 650 aa12.1□□□□□ -0.47
CPNE3-201ENST00000517354 PCDHB3Q9Y5E6 796 aa12.1□□□□□ -0.47
CPNE3-201ENST00000517354 HOXA2O43364 376 aa12.09□□□□□ -0.47
CPNE3-201ENST00000517354 FDX1P10109 184 aa12.09□□□□□ -0.47
CPNE3-201ENST00000517354 SPTLC1O15269 473 aa12.08□□□□□ -0.48
CPNE3-201ENST00000517354 CSPP1Q1MSJ5 1256 aa12.08□□□□□ -0.48
CPNE3-201ENST00000517354 PUS10Q3MIT2 529 aaKnown RBP12.08□□□□□ -0.48
CPNE3-201ENST00000517354 HCSTQ9UBK5 93 aa12.08□□□□□ -0.48
CPNE3-201ENST00000517354 RSBN1LQ6PCB5 846 aaPredicted RBP12.07□□□□□ -0.48
CPNE3-201ENST00000517354 PROCA1Q8NCQ7 364 aaPredicted RBP12.07□□□□□ -0.48
CPNE3-201ENST00000517354 NUTM2BA6NNL0 878 aaPredicted RBP12.06□□□□□ -0.48
CPNE3-201ENST00000517354 NUTM2EB1AL46 878 aaPredicted RBP12.06□□□□□ -0.48
CPNE3-201ENST00000517354 NR1I2O75469 434 aa12.06□□□□□ -0.48
CPNE3-201ENST00000517354 GJA5P36382 358 aa12.06□□□□□ -0.48
CPNE3-201ENST00000517354 NUTM2DQ5VT03 806 aaPredicted RBP12.06□□□□□ -0.48
CPNE3-201ENST00000517354 NUTM2AQ8IVF1 878 aaPredicted RBP12.06□□□□□ -0.48
CPNE3-201ENST00000517354 Q3C1V9 767 aa12.04□□□□□ -0.48
CPNE3-201ENST00000517354 LIMD1Q9UGP4 676 aa12.04□□□□□ -0.48
CPNE3-201ENST00000517354 GTF3C3Q9Y5Q9 886 aa12.04□□□□□ -0.48
CPNE3-201ENST00000517354 C6orf229H3BNL8 230 aa12.03□□□□□ -0.48
CPNE3-201ENST00000517354 MORN1Q5T089 497 aa12.03□□□□□ -0.48
CPNE3-201ENST00000517354 COPS2P61201 443 aa12.02□□□□□ -0.49
CPNE3-201ENST00000517354 GUCA2AQ02747 115 aa12.02□□□□□ -0.49
CPNE3-201ENST00000517354 PCDHB15Q9Y5E8 787 aa12.02□□□□□ -0.49
CPNE3-201ENST00000517354 TUSC1Q2TAM9 212 aa12.01□□□□□ -0.49
CPNE3-201ENST00000517354 HLA-CQ95604 372 aa12.01□□□□□ -0.49
CPNE3-201ENST00000517354 SLC27A5Q9Y2P5 690 aa12.01□□□□□ -0.49
CPNE3-201ENST00000517354 BLOC1S3Q6QNY0 202 aa12□□□□□ -0.49
CPNE3-201ENST00000517354 SCUBE3Q8IX30 993 aa12□□□□□ -0.49
CPNE3-201ENST00000517354 ZBTB3Q9H5J0 574 aa12□□□□□ -0.49
CPNE3-201ENST00000517354 MMRN1Q13201 1228 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms