RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, humanhuman

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-223ENST00000515459 BCANQ96GW7 911 aa24.55■■□□□ 1.52
LMNA-223ENST00000515459 RPRD2Q5VT52 1461 aaKnown RBP24.55■■□□□ 1.52
LMNA-223ENST00000515459 MYO5BQ9ULV0 1848 aa24.51■■□□□ 1.51
LMNA-223ENST00000515459 MSH6P52701 1360 aa24.51■■□□□ 1.51
LMNA-223ENST00000515459 ANKRD50Q9ULJ7 1429 aa24.5■■□□□ 1.51
LMNA-223ENST00000515459 GCC2Q8IWJ2 1684 aa24.5■■□□□ 1.51
LMNA-223ENST00000515459 CHD2O14647 1828 aaKnown RBP24.49■■□□□ 1.51
LMNA-223ENST00000515459 ZFYVE9O95405 1425 aa24.48■■□□□ 1.51
LMNA-223ENST00000515459 FAM50AQ14320 339 aaKnown RBP24.48■■□□□ 1.51
LMNA-223ENST00000515459 PLEKHG1Q9ULL1 1385 aa24.47■■□□□ 1.51
LMNA-223ENST00000515459 HDGFP51858 240 aaKnown RBP24.47■■□□□ 1.51
LMNA-223ENST00000515459 PHLPP1O60346 1717 aa24.47■■□□□ 1.51
LMNA-223ENST00000515459 PPP1R15AO75807 674 aaPredicted RBP24.46■■□□□ 1.51
LMNA-223ENST00000515459 POTEAQ6S8J7 498 aa24.46■■□□□ 1.51
LMNA-223ENST00000515459 SLAIN2Q9P270 581 aa24.46■■□□□ 1.51
LMNA-223ENST00000515459 TMEM131LA2VDJ0 1609 aa24.46■■□□□ 1.51
LMNA-223ENST00000515459 RIMS2Q9UQ26 1411 aa24.44■■□□□ 1.5
LMNA-223ENST00000515459 UNC13BO14795 1591 aa24.41■■□□□ 1.5
LMNA-223ENST00000515459 TBX22Q9Y458 520 aa24.4■■□□□ 1.5
LMNA-223ENST00000515459 JCADQ9P266 1359 aa24.4■■□□□ 1.5
LMNA-223ENST00000515459 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.39■■□□□ 1.495e-9■□□□□ 8
LMNA-223ENST00000515459 NCOA3Q9Y6Q9 1424 aa24.38■■□□□ 1.49
LMNA-223ENST00000515459 E9PCH4 1651 aa24.37■■□□□ 1.49
LMNA-223ENST00000515459 CHGAP10645 457 aaKnown RBP24.37■■□□□ 1.49
LMNA-223ENST00000515459 COL16A1Q07092 1604 aaPredicted RBP24.35■■□□□ 1.49
LMNA-223ENST00000515459 DIP2AQ14689 1571 aa24.34■■□□□ 1.49
LMNA-223ENST00000515459 C14orf37Q86TY3 774 aa24.34■■□□□ 1.49
LMNA-223ENST00000515459 ADAMTS13Q76LX8 1427 aa24.33■■□□□ 1.49
LMNA-223ENST00000515459 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.32■■□□□ 1.48
LMNA-223ENST00000515459 IQGAP3Q86VI3 1631 aa24.32■■□□□ 1.48
LMNA-223ENST00000515459 PIK3R4Q99570 1358 aa24.31■■□□□ 1.48
LMNA-223ENST00000515459 NUTM2DQ5VT03 806 aaPredicted RBP24.31■■□□□ 1.48
LMNA-223ENST00000515459 SETD1AO15047 1707 aaKnown RBP24.3■■□□□ 1.48
LMNA-223ENST00000515459 CADPS2Q86UW7 1296 aa24.3■■□□□ 1.48
LMNA-223ENST00000515459 C19orf44Q9H6X5 657 aa24.29■■□□□ 1.48
LMNA-223ENST00000515459 ROCK1Q13464 1354 aa24.29■■□□□ 1.48
LMNA-223ENST00000515459 SPATA31A6Q5VVP1 1343 aa24.28■■□□□ 1.48
LMNA-223ENST00000515459 TRPM2O94759 1503 aa24.27■■□□□ 1.48
LMNA-223ENST00000515459 ATF3P18847 181 aa24.27■■□□□ 1.48
LMNA-223ENST00000515459 AHDC1Q5TGY3 1603 aaPredicted RBP24.27■■□□□ 1.48
LMNA-223ENST00000515459 LRP6O75581 1613 aa24.25■■□□□ 1.47
LMNA-223ENST00000515459 SHPRHQ149N8 1683 aa24.25■■□□□ 1.47
LMNA-223ENST00000515459 MEX3CQ5U5Q3 659 aaKnown RBP24.23■■□□□ 1.47
LMNA-223ENST00000515459 AMOTL2Q9Y2J4 779 aa24.23■■□□□ 1.47
LMNA-223ENST00000515459 NUP155O75694 1391 aa24.23■■□□□ 1.47
LMNA-223ENST00000515459 ZNF772Q68DY9 489 aaPredicted RBP24.21■■□□□ 1.47
LMNA-223ENST00000515459 PTPRUQ92729 1446 aa24.2■■□□□ 1.46
LMNA-223ENST00000515459 DCCP43146 1447 aa24.18■■□□□ 1.46
LMNA-223ENST00000515459 BRINP3Q76B58 766 aa24.17■■□□□ 1.46
LMNA-223ENST00000515459 XRN1Q8IZH2 1706 aaKnown RBP24.17■■□□□ 1.46
LMNA-223ENST00000515459 NRXN3Q9Y4C0 1643 aa24.17■■□□□ 1.46
LMNA-223ENST00000515459 SPHKAPQ2M3C7 1700 aa24.16■■□□□ 1.46
LMNA-223ENST00000515459 SETBP1Q9Y6X0 1596 aa24.16■■□□□ 1.46
LMNA-223ENST00000515459 ITGAEP38570 1179 aa24.14■■□□□ 1.45
LMNA-223ENST00000515459 ASXL1Q8IXJ9 1541 aa24.12■■□□□ 1.45
LMNA-223ENST00000515459 TRIM52Q96A61 297 aa24.12■■□□□ 1.45
LMNA-223ENST00000515459 NHSL1Q5SYE7 1610 aa24.1■■□□□ 1.45
LMNA-223ENST00000515459 NUTM2BA6NNL0 878 aaPredicted RBP24.1■■□□□ 1.45
LMNA-223ENST00000515459 NUTM2EB1AL46 878 aaPredicted RBP24.1■■□□□ 1.45
LMNA-223ENST00000515459 ZNF326Q5BKZ1 582 aaKnown RBP24.1■■□□□ 1.45
LMNA-223ENST00000515459 NUTM2AQ8IVF1 878 aaPredicted RBP24.1■■□□□ 1.45
LMNA-223ENST00000515459 MST1RQ04912 1400 aa24.1■■□□□ 1.45
LMNA-223ENST00000515459 UPF1Q92900 1129 aaKnown RBP eCLIP24.09■■□□□ 1.45
LMNA-223ENST00000515459 SETD5Q9C0A6 1442 aa24.09■■□□□ 1.45
LMNA-223ENST00000515459 RXRBP28702 533 aa24.08■■□□□ 1.45
LMNA-223ENST00000515459 METP08581 1390 aa24.07■■□□□ 1.44
LMNA-223ENST00000515459 LRRC59Q96AG4 307 aaKnown RBP24.05■■□□□ 1.44
LMNA-223ENST00000515459 CDK12Q9NYV4 1490 aaPredicted RBP24.05■■□□□ 1.44
LMNA-223ENST00000515459 ADGRL3Q9HAR2 1447 aa24.04■■□□□ 1.44
LMNA-223ENST00000515459 NALCNQ8IZF0 1738 aa24.03■■□□□ 1.44
LMNA-223ENST00000515459 NEXMIFQ5QGS0 1516 aa24.03■■□□□ 1.44
LMNA-223ENST00000515459 AFF2P51816 1311 aa24.03■■□□□ 1.44
LMNA-223ENST00000515459 CLTCL1P53675 1640 aa24.02■■□□□ 1.44
LMNA-223ENST00000515459 KIF1BO60333 1816 aa24.01■■□□□ 1.43
LMNA-223ENST00000515459 PPARGC1BQ86YN6 1023 aaKnown RBP23.97■■□□□ 1.43
LMNA-223ENST00000515459 PNPLA6Q8IY17 1366 aa23.97■■□□□ 1.43
LMNA-223ENST00000515459 DDX17Q92841 729 aaKnown RBP23.97■■□□□ 1.43
LMNA-223ENST00000515459 C8orf37Q96NL8 207 aa23.96■■□□□ 1.43
LMNA-223ENST00000515459 QTRT2Q9H974 415 aaKnown RBP23.93■■□□□ 1.42
LMNA-223ENST00000515459 C1orf167Q5SNV9 1468 aa23.93■■□□□ 1.42
LMNA-223ENST00000515459 LAMC1P11047 1609 aa23.92■■□□□ 1.42
LMNA-223ENST00000515459 RBM6P78332 1123 aaKnown RBP23.92■■□□□ 1.42
LMNA-223ENST00000515459 PTCH1Q13635 1447 aa23.92■■□□□ 1.42
LMNA-223ENST00000515459 VGFO15240 615 aaPredicted RBP23.9■■□□□ 1.42
LMNA-223ENST00000515459 RGS12O14924 1447 aa23.9■■□□□ 1.42
LMNA-223ENST00000515459 NAIPQ13075 1403 aa23.88■■□□□ 1.41
LMNA-223ENST00000515459 NGLY1Q96IV0 654 aa23.88■■□□□ 1.41
LMNA-223ENST00000515459 ADAMTS2O95450 1211 aa23.87■■□□□ 1.41
LMNA-223ENST00000515459 ROBO2Q9HCK4 1378 aa23.87■■□□□ 1.41
LMNA-223ENST00000515459 SOS2Q07890 1332 aaPredicted RBP23.85■■□□□ 1.41
LMNA-223ENST00000515459 RRBP1Q9P2E9 1410 aaKnown RBP23.85■■□□□ 1.41
LMNA-223ENST00000515459 ORAI2Q96SN7 254 aa23.85■■□□□ 1.41
LMNA-223ENST00000515459 PRAG1Q86YV5 1406 aa23.84■■□□□ 1.41
LMNA-223ENST00000515459 RPGRIP1LQ68CZ1 1315 aa23.84■■□□□ 1.41
LMNA-223ENST00000515459 PPLO60437 1756 aa23.83■■□□□ 1.4
LMNA-223ENST00000515459 HFM1A2PYH4 1435 aa23.82■■□□□ 1.4
LMNA-223ENST00000515459 USP21Q9UK80 565 aa23.8■■□□□ 1.4
LMNA-223ENST00000515459 COL22A1Q8NFW1 1626 aaPredicted RBP23.79■■□□□ 1.4
LMNA-223ENST00000515459 SLC4A1APQ9BWU0 796 aaKnown RBP23.77■■□□□ 1.4
LMNA-223ENST00000515459 TRPC5Q9UL62 973 aaPredicted RBP23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms