RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 ZNF326Q5BKZ1 582 aaKnown RBP17.2■□□□□ 0.34
VCAN-212ENST00000515397 MYO5BQ9ULV0 1848 aa17.19■□□□□ 0.34
VCAN-212ENST00000515397 HDGFP51858 240 aaKnown RBP17.18■□□□□ 0.34
VCAN-212ENST00000515397 ZFYVE9O95405 1425 aa17.18■□□□□ 0.34
VCAN-212ENST00000515397 TMEM131LA2VDJ0 1609 aa17.18■□□□□ 0.34
VCAN-212ENST00000515397 DISP3Q9P2K9 1392 aa17.17■□□□□ 0.34
VCAN-212ENST00000515397 STRCP1A6NGW2 1772 aa17.17■□□□□ 0.34
VCAN-212ENST00000515397 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.16■□□□□ 0.34
VCAN-212ENST00000515397 MPHOSPH9Q99550 1183 aa17.16■□□□□ 0.34
VCAN-212ENST00000515397 CPS1P31327 1500 aa17.16■□□□□ 0.34
VCAN-212ENST00000515397 KCNA6P17658 529 aa17.15■□□□□ 0.34
VCAN-212ENST00000515397 IQSEC2Q5JU85 1478 aa17.15■□□□□ 0.34
VCAN-212ENST00000515397 LRRC7Q96NW7 1537 aa17.15■□□□□ 0.34
VCAN-212ENST00000515397 ILDR2Q71H61 639 aa17.14■□□□□ 0.33
VCAN-212ENST00000515397 PROSER2Q86WR7 435 aaPredicted RBP17.14■□□□□ 0.33
VCAN-212ENST00000515397 PLEKHG1Q9ULL1 1385 aa17.14■□□□□ 0.33
VCAN-212ENST00000515397 KDM5AP29375 1690 aaKnown RBP17.13■□□□□ 0.33
VCAN-212ENST00000515397 TOM1O60784 492 aa17.13■□□□□ 0.33
VCAN-212ENST00000515397 SETD5Q9C0A6 1442 aa17.13■□□□□ 0.33
VCAN-212ENST00000515397 SPHKAPQ2M3C7 1700 aa17.1■□□□□ 0.33
VCAN-212ENST00000515397 TBX22Q9Y458 520 aa17.1■□□□□ 0.33
VCAN-212ENST00000515397 TMEM94Q12767 1356 aa17.09■□□□□ 0.33
VCAN-212ENST00000515397 RAB3GAP2Q9H2M9 1393 aa17.09■□□□□ 0.33
VCAN-212ENST00000515397 CLTCL1P53675 1640 aa17.09■□□□□ 0.33
VCAN-212ENST00000515397 HSPA1LP34931 641 aa17.08■□□□□ 0.32
VCAN-212ENST00000515397 RGL3Q3MIN7 710 aa17.08■□□□□ 0.32
VCAN-212ENST00000515397 ADAMTS13Q76LX8 1427 aa17.07■□□□□ 0.32
VCAN-212ENST00000515397 TRPM2O94759 1503 aa17.06■□□□□ 0.32
VCAN-212ENST00000515397 AMOTL2Q9Y2J4 779 aa17.05■□□□□ 0.32
VCAN-212ENST00000515397 ALKQ9UM73 1620 aa17.03■□□□□ 0.32
VCAN-212ENST00000515397 SOCS7O14512 581 aa17.03■□□□□ 0.32
VCAN-212ENST00000515397 C14orf37Q86TY3 774 aa17.02■□□□□ 0.32
VCAN-212ENST00000515397 PTPRUQ92729 1446 aa17.02■□□□□ 0.31
VCAN-212ENST00000515397 METP08581 1390 aa17.01■□□□□ 0.31
VCAN-212ENST00000515397 XIRP1Q702N8 1843 aaKnown RBP17■□□□□ 0.31
VCAN-212ENST00000515397 CCDC144AA2RUR9 1427 aa16.99■□□□□ 0.31
VCAN-212ENST00000515397 VGFO15240 615 aaPredicted RBP16.99■□□□□ 0.31
VCAN-212ENST00000515397 NEXMIFQ5QGS0 1516 aa16.99■□□□□ 0.31
VCAN-212ENST00000515397 KIF1BO60333 1816 aa16.98■□□□□ 0.31
VCAN-212ENST00000515397 ADGRF5Q8IZF2 1346 aa16.97■□□□□ 0.31
VCAN-212ENST00000515397 RPGRIP1LQ68CZ1 1315 aa16.96■□□□□ 0.31
VCAN-212ENST00000515397 CHD2O14647 1828 aaKnown RBP16.96■□□□□ 0.31
VCAN-212ENST00000515397 NRXN3Q9Y4C0 1643 aa16.96■□□□□ 0.3
VCAN-212ENST00000515397 NWD1Q149M9 1564 aa16.95■□□□□ 0.3
VCAN-212ENST00000515397 NKTRP30414 1462 aaKnown RBP16.95■□□□□ 0.3
VCAN-212ENST00000515397 MSH6P52701 1360 aa16.95■□□□□ 0.3
VCAN-212ENST00000515397 SLAIN2Q9P270 581 aa16.95■□□□□ 0.3
VCAN-212ENST00000515397 PIK3R4Q99570 1358 aa16.94■□□□□ 0.3
VCAN-212ENST00000515397 SPATA31E1Q6ZUB1 1445 aa16.93■□□□□ 0.3
VCAN-212ENST00000515397 SETBP1Q9Y6X0 1596 aa16.93■□□□□ 0.3
VCAN-212ENST00000515397 C19orf44Q9H6X5 657 aa16.92■□□□□ 0.3
VCAN-212ENST00000515397 ACIN1Q9UKV3 1341 aaKnown RBP16.92■□□□□ 0.3
VCAN-212ENST00000515397 DIP2AQ14689 1571 aa16.91■□□□□ 0.3
VCAN-212ENST00000515397 HRCP23327 699 aa16.91■□□□□ 0.3
VCAN-212ENST00000515397 TMEM132EQ6IEE7 984 aa16.91■□□□□ 0.3
VCAN-212ENST00000515397 STK26Q9P289 416 aa16.91■□□□□ 0.3
VCAN-212ENST00000515397 ANKRD30BQ9BXX2 1392 aa16.9■□□□□ 0.3
VCAN-212ENST00000515397 ATF3P18847 181 aa16.9■□□□□ 0.3
VCAN-212ENST00000515397 KDM2AQ9Y2K7 1162 aa16.89■□□□□ 0.29
VCAN-212ENST00000515397 FAM135BQ49AJ0 1406 aa16.88■□□□□ 0.29
VCAN-212ENST00000515397 CADPS2Q86UW7 1296 aa16.87■□□□□ 0.29
VCAN-212ENST00000515397 ROBO2Q9HCK4 1378 aa16.86■□□□□ 0.29
VCAN-212ENST00000515397 PPLO60437 1756 aa16.85■□□□□ 0.29
VCAN-212ENST00000515397 CFAP70Q5T0N1 1121 aa16.85■□□□□ 0.29
VCAN-212ENST00000515397 WAPLQ7Z5K2 1190 aa16.85■□□□□ 0.29
VCAN-212ENST00000515397 NCOA3Q9Y6Q9 1424 aa16.85■□□□□ 0.29
VCAN-212ENST00000515397 XRN1Q8IZH2 1706 aaKnown RBP16.83■□□□□ 0.28
VCAN-212ENST00000515397 DCAF11Q8TEB1 546 aa16.83■□□□□ 0.28
VCAN-212ENST00000515397 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.82■□□□□ 0.28
VCAN-212ENST00000515397 ROBO1Q9Y6N7 1651 aa16.82■□□□□ 0.28
VCAN-212ENST00000515397 DDX17Q92841 729 aaKnown RBP16.82■□□□□ 0.28
VCAN-212ENST00000515397 BRINP3Q76B58 766 aa16.81■□□□□ 0.28
VCAN-212ENST00000515397 C14orf93Q9H972 538 aaKnown RBP16.8■□□□□ 0.28
VCAN-212ENST00000515397 SETD1AO15047 1707 aaKnown RBP16.79■□□□□ 0.28
VCAN-212ENST00000515397 NUTM2FA1L443 756 aa16.79■□□□□ 0.28
VCAN-212ENST00000515397 PIK3C2GO75747 1445 aa16.79■□□□□ 0.28
VCAN-212ENST00000515397 PLEKHH1Q9ULM0 1364 aa16.77■□□□□ 0.28
VCAN-212ENST00000515397 SAFB2Q14151 953 aaKnown RBP eCLIP16.77■□□□□ 0.28
VCAN-212ENST00000515397 ORAI2Q96SN7 254 aa16.77■□□□□ 0.28
VCAN-212ENST00000515397 ADGRL3Q9HAR2 1447 aa16.77■□□□□ 0.27
VCAN-212ENST00000515397 SIN3AQ96ST3 1273 aa16.76■□□□□ 0.27
VCAN-212ENST00000515397 MST1RQ04912 1400 aa16.76■□□□□ 0.27
VCAN-212ENST00000515397 IFT172Q9UG01 1749 aa16.76■□□□□ 0.27
VCAN-212ENST00000515397 LRPPRCP42704 1394 aaKnown RBP16.76■□□□□ 0.27
VCAN-212ENST00000515397 DHX57Q6P158 1386 aaKnown RBP16.76■□□□□ 0.27
VCAN-212ENST00000515397 ASXL1Q8IXJ9 1541 aa16.75■□□□□ 0.27
VCAN-212ENST00000515397 PHF23Q9BUL5 403 aaPredicted RBP16.75■□□□□ 0.27
VCAN-212ENST00000515397 PTCH1Q13635 1447 aa16.75■□□□□ 0.27
VCAN-212ENST00000515397 MED1Q15648 1581 aaPredicted RBP16.74■□□□□ 0.27
VCAN-212ENST00000515397 ABCC11Q96J66 1382 aa16.74■□□□□ 0.27
VCAN-212ENST00000515397 YTHDC2Q9H6S0 1430 aaKnown RBP16.73■□□□□ 0.27
VCAN-212ENST00000515397 NEUROD1Q13562 356 aa16.73■□□□□ 0.27
VCAN-212ENST00000515397 TRAK1Q9UPV9 953 aa16.73■□□□□ 0.27
VCAN-212ENST00000515397 DCCP43146 1447 aa16.72■□□□□ 0.27
VCAN-212ENST00000515397 NRXN1Q9ULB1 1477 aa16.72■□□□□ 0.27
VCAN-212ENST00000515397 PHLPP1O60346 1717 aa16.71■□□□□ 0.27
VCAN-212ENST00000515397 NALCNQ8IZF0 1738 aa16.71■□□□□ 0.27
VCAN-212ENST00000515397 TRIM26Q12899 539 aaPredicted RBP16.71■□□□□ 0.27
VCAN-212ENST00000515397 PRAM1Q96QH2 718 aa16.71■□□□□ 0.27
VCAN-212ENST00000515397 MYOM2P54296 1465 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms