RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 ZNF326Q5BKZ1 582 aaKnown RBP30.35■■■□□ 2.45
LSM6-207ENST00000515311 ZFYVE9O95405 1425 aa30.35■■■□□ 2.45
LSM6-207ENST00000515311 TIMELESSQ9UNS1 1208 aa30.34■■■□□ 2.45
LSM6-207ENST00000515311 RIMS2Q9UQ26 1411 aa30.33■■■□□ 2.45
LSM6-207ENST00000515311 MYOM2P54296 1465 aa30.3■■■□□ 2.44
LSM6-207ENST00000515311 L3MBTL2Q969R5 705 aa30.29■■■□□ 2.44
LSM6-207ENST00000515311 STAC3Q96MF2 364 aa30.29■■■□□ 2.44
LSM6-207ENST00000515311 POLR1AO95602 1720 aaPredicted RBP30.28■■■□□ 2.44
LSM6-207ENST00000515311 HDGFP51858 240 aaKnown RBP30.28■■■□□ 2.44
LSM6-207ENST00000515311 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.27■■■□□ 2.44
LSM6-207ENST00000515311 SCAF11Q99590 1463 aaKnown RBP30.25■■■□□ 2.43
LSM6-207ENST00000515311 DCAF11Q8TEB1 546 aa30.24■■■□□ 2.43
LSM6-207ENST00000515311 EID1Q9Y6B2 187 aa30.24■■■□□ 2.43
LSM6-207ENST00000515311 VGFO15240 615 aaPredicted RBP30.23■■■□□ 2.43
LSM6-207ENST00000515311 NRXN1Q9ULB1 1477 aa30.23■■■□□ 2.43
LSM6-207ENST00000515311 ANKLE2Q86XL3 938 aa30.21■■■□□ 2.43
LSM6-207ENST00000515311 LTKP29376 864 aa30.2■■■□□ 2.43
LSM6-207ENST00000515311 HSPA2P54652 639 aa30.2■■■□□ 2.43
LSM6-207ENST00000515311 TXNDC2Q86VQ3 553 aa30.2■■■□□ 2.43
LSM6-207ENST00000515311 PPP1R15AO75807 674 aaPredicted RBP30.18■■■□□ 2.42
LSM6-207ENST00000515311 MED14O60244 1454 aa30.17■■■□□ 2.42
LSM6-207ENST00000515311 PLEKHG1Q9ULL1 1385 aa30.16■■■□□ 2.42
LSM6-207ENST00000515311 SETBP1Q9Y6X0 1596 aa30.16■■■□□ 2.42
LSM6-207ENST00000515311 STRCQ7RTU9 1775 aa30.16■■■□□ 2.42
LSM6-207ENST00000515311 PIK3C2GO75747 1445 aa30.16■■■□□ 2.42
LSM6-207ENST00000515311 KDM2AQ9Y2K7 1162 aa30.16■■■□□ 2.42
LSM6-207ENST00000515311 PRAG1Q86YV5 1406 aa30.15■■■□□ 2.42
LSM6-207ENST00000515311 NUTM2DQ5VT03 806 aaPredicted RBP30.15■■■□□ 2.42
LSM6-207ENST00000515311 ADGRF5Q8IZF2 1346 aa30.15■■■□□ 2.42
LSM6-207ENST00000515311 LAMC1P11047 1609 aa30.13■■■□□ 2.41
LSM6-207ENST00000515311 NRXN3Q9Y4C0 1643 aa30.13■■■□□ 2.41
LSM6-207ENST00000515311 IQGAP1P46940 1657 aa30.13■■■□□ 2.41
LSM6-207ENST00000515311 KIAA1210Q9ULL0 1709 aa30.1■■■□□ 2.41
LSM6-207ENST00000515311 NPHP4O75161 1426 aaPredicted RBP30.1■■■□□ 2.41
LSM6-207ENST00000515311 NCKAP5LQ9HCH0 1330 aa30.09■■■□□ 2.41
LSM6-207ENST00000515311 DIP2AQ14689 1571 aa30.08■■■□□ 2.41
LSM6-207ENST00000515311 ZEB1P37275 1124 aaPredicted RBP30.08■■■□□ 2.41
LSM6-207ENST00000515311 SETD1AO15047 1707 aaKnown RBP30.07■■■□□ 2.4
LSM6-207ENST00000515311 TRPM1Q7Z4N2 1603 aa30.06■■■□□ 2.4
LSM6-207ENST00000515311 ALKQ9UM73 1620 aa30.06■■■□□ 2.4
LSM6-207ENST00000515311 ADAMTS13Q76LX8 1427 aa30.04■■■□□ 2.4
LSM6-207ENST00000515311 NBPF8Q3BBV2 869 aa30.01■■■□□ 2.39
LSM6-207ENST00000515311 C14orf93Q9H972 538 aaKnown RBP30.01■■■□□ 2.39
LSM6-207ENST00000515311 RALGAPBQ86X10 1494 aa30■■■□□ 2.39
LSM6-207ENST00000515311 BCANQ96GW7 911 aa30■■■□□ 2.39
LSM6-207ENST00000515311 TBX22Q9Y458 520 aa29.97■■■□□ 2.39
LSM6-207ENST00000515311 CFAP70Q5T0N1 1121 aa29.96■■■□□ 2.39
LSM6-207ENST00000515311 SENP3Q9H4L4 574 aaPredicted RBP29.95■■■□□ 2.39
LSM6-207ENST00000515311 DMRT2Q9Y5R5 561 aa29.95■■■□□ 2.39
LSM6-207ENST00000515311 ADGRB1O14514 1584 aa29.94■■■□□ 2.38
LSM6-207ENST00000515311 SLC26A8Q96RN1 970 aa29.94■■■□□ 2.38
LSM6-207ENST00000515311 ASXL1Q8IXJ9 1541 aa29.94■■■□□ 2.38
LSM6-207ENST00000515311 PIK3R4Q99570 1358 aa29.92■■■□□ 2.38
LSM6-207ENST00000515311 GPRASP1Q5JY77 1395 aa29.9■■■□□ 2.38
LSM6-207ENST00000515311 ROCK2O75116 1388 aaKnown RBP29.9■■■□□ 2.38
LSM6-207ENST00000515311 METP08581 1390 aa29.9■■■□□ 2.38
LSM6-207ENST00000515311 CHD2O14647 1828 aaKnown RBP29.88■■■□□ 2.37
LSM6-207ENST00000515311 NBPF1Q3BBV0 1214 aa29.87■■■□□ 2.37
LSM6-207ENST00000515311 KNDC1Q76NI1 1749 aa29.85■■■□□ 2.37
LSM6-207ENST00000515311 XRN1Q8IZH2 1706 aaKnown RBP29.85■■■□□ 2.37
LSM6-207ENST00000515311 NWD1Q149M9 1564 aa29.84■■■□□ 2.37
LSM6-207ENST00000515311 YTHDC2Q9H6S0 1430 aaKnown RBP29.83■■■□□ 2.37
LSM6-207ENST00000515311 TMEM132EQ6IEE7 984 aa29.83■■■□□ 2.37
LSM6-207ENST00000515311 LRPPRCP42704 1394 aaKnown RBP29.82■■■□□ 2.36
LSM6-207ENST00000515311 PTPRUQ92729 1446 aa29.8■■■□□ 2.36
LSM6-207ENST00000515311 TECPR2O15040 1411 aa29.79■■■□□ 2.36
LSM6-207ENST00000515311 ABCC11Q96J66 1382 aa29.78■■■□□ 2.36
LSM6-207ENST00000515311 CPS1P31327 1500 aa29.78■■■□□ 2.36
LSM6-207ENST00000515311 CARD11Q9BXL7 1154 aa29.78■■■□□ 2.36
LSM6-207ENST00000515311 DLC1Q96QB1 1528 aa29.77■■■□□ 2.36
LSM6-207ENST00000515311 ARHGEF28Q8N1W1 1705 aaKnown RBP29.76■■■□□ 2.36
LSM6-207ENST00000515311 STRCP1A6NGW2 1772 aa29.75■■■□□ 2.35
LSM6-207ENST00000515311 KCNA6P17658 529 aa29.75■■■□□ 2.35
LSM6-207ENST00000515311 NKTRP30414 1462 aaKnown RBP29.74■■■□□ 2.35
LSM6-207ENST00000515311 PTCH1Q13635 1447 aa29.74■■■□□ 2.35
LSM6-207ENST00000515311 AMOTL2Q9Y2J4 779 aa29.74■■■□□ 2.35
LSM6-207ENST00000515311 STK26Q9P289 416 aa29.72■■■□□ 2.35
LSM6-207ENST00000515311 EIF3AQ14152 1382 aaKnown RBP29.7■■■□□ 2.35
LSM6-207ENST00000515311 SIRT1Q96EB6 747 aa29.7■■■□□ 2.35
LSM6-207ENST00000515311 FAM135BQ49AJ0 1406 aa29.7■■■□□ 2.34
LSM6-207ENST00000515311 TRAK1Q9UPV9 953 aa29.69■■■□□ 2.34
LSM6-207ENST00000515311 USP47Q96K76 1375 aa29.68■■■□□ 2.34
LSM6-207ENST00000515311 ROBO2Q9HCK4 1378 aa29.67■■■□□ 2.34
LSM6-207ENST00000515311 ZNF335Q9H4Z2 1342 aaPredicted RBP29.67■■■□□ 2.34
LSM6-207ENST00000515311 QRICH2Q9H0J4 1663 aa29.63■■■□□ 2.33
LSM6-207ENST00000515311 LTBP4Q8N2S1 1624 aa29.61■■■□□ 2.33
LSM6-207ENST00000515311 EIF4G2P78344 907 aaKnown RBP eCLIP29.61■■■□□ 2.33
LSM6-207ENST00000515311 PRAM1Q96QH2 718 aa29.6■■■□□ 2.33
LSM6-207ENST00000515311 CENPJQ9HC77 1338 aaPredicted RBP29.59■■■□□ 2.33
LSM6-207ENST00000515311 PLEKHH1Q9ULM0 1364 aa29.57■■■□□ 2.32
LSM6-207ENST00000515311 POGKQ9P215 609 aa29.57■■■□□ 2.32
LSM6-207ENST00000515311 LRRC7Q96NW7 1537 aa29.56■■■□□ 2.32
LSM6-207ENST00000515311 NCOA3Q9Y6Q9 1424 aa29.56■■■□□ 2.32
LSM6-207ENST00000515311 SBNO2Q9Y2G9 1366 aa29.56■■■□□ 2.32
LSM6-207ENST00000515311 WAPLQ7Z5K2 1190 aa29.56■■■□□ 2.32
LSM6-207ENST00000515311 PROSER2Q86WR7 435 aaPredicted RBP29.56■■■□□ 2.32
LSM6-207ENST00000515311 XIRP1Q702N8 1843 aaKnown RBP29.56■■■□□ 2.32
LSM6-207ENST00000515311 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.55■■■□□ 2.32
LSM6-207ENST00000515311 NALCNQ8IZF0 1738 aa29.54■■■□□ 2.32
LSM6-207ENST00000515311 ST20-MTHFSA0A0A6YYL1 179 aa29.54■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms